Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14a' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7308087-fedora-38-x86_64 --chroot fedora-38-x86_64 Version: 0.72 PID: 6357 Logging PID: 6358 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 7308087, 'buildroot_pkgs': [], 'chroot': 'fedora-38-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '89d664b87d5c331f0897b939655f45a3724e46b5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-spAbundance', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-spAbundance', 'package_version': '0.1.3-1.copr7308087', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-38-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '7308087-fedora-38-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-spAbundance /var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-spAbundance', '/var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance'... Running: git checkout 89d664b87d5c331f0897b939655f45a3724e46b5 -- cmd: ['git', 'checkout', '89d664b87d5c331f0897b939655f45a3724e46b5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance rc: 0 stdout: stderr: Note: switching to '89d664b87d5c331f0897b939655f45a3724e46b5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 89d664b automatic import of R-CRAN-spAbundance Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading spAbundance_0.1.3.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o spAbundance_0.1.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-spAbundance/spAbundance_0.1.3.tar.gz/md5/e9aa77c87610d2fc68eab885022e2d27/spAbundance_0.1.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 604k 100 604k 0 0 7567k 0 --:--:-- --:--:-- --:--:-- 7647k INFO: Reading stdout from command: md5sum spAbundance_0.1.3.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance/R-CRAN-spAbundance.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713089197.581341 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance/R-CRAN-spAbundance.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713089197.581341 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance/R-CRAN-spAbundance.spec) Config(fedora-38-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1713089197.581341/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 47 MB/s | 42 MB 00:00 fedora 15 MB/s | 83 MB 00:05 updates 4.4 MB/s | 41 MB 00:09 Last metadata expiration check: 0:00:10 ago on Sun Apr 14 10:07:17 2024. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc38 updates 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.1-12.fc38 updates 1.1 M cpio x86_64 2.13-14.fc38 fedora 276 k diffutils x86_64 3.10-1.fc38 updates 398 k fedora-release-common noarch 38-36 updates 22 k findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M glibc-minimal-langpack x86_64 2.37-18.fc38 updates 41 k grep x86_64 3.8-3.fc38 fedora 293 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.2-2.fc38 fedora 181 k patch x86_64 2.7.6-19.fc38 fedora 126 k redhat-rpm-config noarch 257-1.fc38 updates 76 k rpm-build x86_64 4.18.2-1.fc38 updates 76 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-6.fc38 fedora 1.3 M tar x86_64 2:1.34-8.fc38 fedora 889 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.38.1-4.fc38 fedora 2.3 M which x86_64 2.21-39.fc38 fedora 42 k xz x86_64 5.4.1-1.fc38 fedora 419 k Installing dependencies: alternatives x86_64 1.26-1.fc38 updates 39 k ansible-srpm-macros noarch 1-12.fc38 updates 21 k audit-libs x86_64 3.1.2-8.fc38 updates 117 k authselect x86_64 1.4.3-1.fc38 updates 149 k authselect-libs x86_64 1.4.3-1.fc38 updates 249 k basesystem noarch 11-15.fc38 fedora 7.0 k binutils x86_64 2.39-16.fc38 updates 5.4 M binutils-gold x86_64 2.39-16.fc38 updates 795 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-1.0.fc38 updates 837 k coreutils-common x86_64 9.1-12.fc38 updates 2.0 M cracklib x86_64 2.9.11-1.fc38 updates 93 k crypto-policies noarch 20230301-1.gita12f7b2.fc38 fedora 93 k curl x86_64 8.0.1-7.fc38 updates 348 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k debugedit x86_64 5.0-9.fc38 updates 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-7.fc38 fedora 22 k elfutils x86_64 0.191-1.fc38 updates 557 k elfutils-debuginfod-client x86_64 0.191-1.fc38 updates 37 k elfutils-default-yama-scope noarch 0.191-1.fc38 updates 12 k elfutils-libelf x86_64 0.191-1.fc38 updates 208 k elfutils-libs x86_64 0.191-1.fc38 updates 263 k fedora-gpg-keys noarch 38-1 fedora 126 k fedora-release noarch 38-36 updates 12 k fedora-release-identity-basic noarch 38-36 updates 13 k fedora-repos noarch 38-1 fedora 9.1 k file x86_64 5.44-3.fc38 fedora 49 k file-libs x86_64 5.44-3.fc38 fedora 730 k filesystem x86_64 3.18-3.fc38 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k forge-srpm-macros noarch 0.2.0-3.fc38 updates 19 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 14.1-3.fc38 updates 4.3 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37-18.fc38 updates 2.1 M glibc-common x86_64 2.37-18.fc38 updates 320 k glibc-gconv-extra x86_64 2.37-18.fc38 updates 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc38 updates 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-19.fc38 updates 10 k keyutils-libs x86_64 1.6.3-1.fc38 updates 31 k krb5-libs x86_64 1.21-3.fc38 updates 764 k libacl x86_64 2.3.1-7.fc38 updates 23 k libarchive x86_64 3.6.1-4.fc38 fedora 400 k libattr x86_64 2.5.1-6.fc38 fedora 18 k libblkid x86_64 2.38.1-4.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-8.fc38 updates 68 k libcap-ng x86_64 0.8.3-8.fc38 updates 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcurl x86_64 8.0.1-7.fc38 updates 315 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.5.2-1.fc38 updates 30 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.38.1-4.fc38 fedora 161 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.2.1-7.fc38 updates 115 k libgomp x86_64 13.2.1-7.fc38 updates 324 k libidn2 x86_64 2.3.7-1.fc38 updates 119 k libmount x86_64 2.38.1-4.fc38 fedora 135 k libnghttp2 x86_64 1.52.0-2.fc38 updates 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.8.0-6.fc38 fedora 35 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc38 fedora 87 k libsemanage x86_64 3.5-2.fc38 fedora 120 k libsepol x86_64 3.5-1.fc38 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.38.1-4.fc38 fedora 64 k libssh x86_64 0.10.6-2.fc38 updates 212 k libssh-config noarch 0.10.6-2.fc38 updates 9.0 k libstdc++ x86_64 13.2.1-7.fc38 updates 870 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.4-1.rc3.fc38 updates 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-8.fc38 fedora 26 k libuuid x86_64 2.38.1-4.fc38 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.36-1.fc38 updates 119 k libxml2 x86_64 2.10.4-1.fc38 updates 701 k libzstd x86_64 1.5.5-1.fc38 updates 308 k lua-libs x86_64 5.4.4-9.fc38 fedora 133 k lua-srpm-macros noarch 1-13.fc38 updates 8.7 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-7.20230520.fc38.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc38.1 updates 336 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.6-1.fc38 updates 254 k openssl-libs x86_64 1:3.0.9-2.fc38 updates 2.1 M p11-kit x86_64 0.25.3-1.fc38 updates 521 k p11-kit-trust x86_64 0.25.3-1.fc38 updates 142 k package-notes-srpm-macros noarch 0.5-8.fc38 updates 11 k pam x86_64 1.5.2-16.fc38 fedora 560 k pam-libs x86_64 1.5.2-16.fc38 fedora 58 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.8.0-6.fc38 fedora 41 k pkgconf-m4 noarch 1.8.0-6.fc38 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-6.fc38 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20240107-1.fc38 updates 58 k pyproject-srpm-macros noarch 1.12.0-1.fc38 updates 14 k python-srpm-macros noarch 3.11-10.fc38 fedora 26 k qt5-srpm-macros noarch 5.15.12-1.fc38 updates 8.3 k qt6-srpm-macros noarch 6.6.0-1.fc38 updates 8.6 k readline x86_64 8.2-4.fc38 updates 212 k rpm x86_64 4.18.2-1.fc38 updates 567 k rpm-build-libs x86_64 4.18.2-1.fc38 updates 93 k rpm-libs x86_64 4.18.2-1.fc38 updates 310 k rpm-sequoia x86_64 1.6.0-1.fc38 updates 872 k rpmautospec-rpm-macros noarch 0.6.3-1.fc38 updates 10 k rust-srpm-macros noarch 26.2-1.fc38 updates 13 k setup noarch 2.14.3-2.fc38 fedora 152 k sqlite-libs x86_64 3.40.1-2.fc38 fedora 666 k systemd-libs x86_64 253.17-1.fc38 updates 649 k tzdata noarch 2024a-1.fc38 updates 715 k util-linux-core x86_64 2.38.1-4.fc38 fedora 473 k xxhash-libs x86_64 0.8.2-1.fc38 updates 37 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zip x86_64 3.0-37.fc38 updates 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc38 updates 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 54 M Installed size: 187 M Downloading Packages: (1/154): basesystem-11-15.fc38.noarch.rpm 86 kB/s | 7.0 kB 00:00 (2/154): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 314 kB/s | 41 kB 00:00 (3/154): bzip2-1.0.8-13.fc38.x86_64.rpm 364 kB/s | 52 kB 00:00 (4/154): crypto-policies-20230301-1.gita12f7b2. 1.6 MB/s | 93 kB 00:00 (5/154): cpio-2.13-14.fc38.x86_64.rpm 2.4 MB/s | 276 kB 00:00 (6/154): ed-1.19-2.fc38.x86_64.rpm 2.8 MB/s | 78 kB 00:00 (7/154): dwz-0.15-2.fc38.x86_64.rpm 2.9 MB/s | 135 kB 00:00 (8/154): efi-srpm-macros-5-7.fc38.noarch.rpm 955 kB/s | 22 kB 00:00 (9/154): cyrus-sasl-lib-2.1.28-9.fc38.x86_64.rp 6.9 MB/s | 794 kB 00:00 (10/154): fedora-gpg-keys-38-1.noarch.rpm 4.1 MB/s | 126 kB 00:00 (11/154): fedora-repos-38-1.noarch.rpm 397 kB/s | 9.1 kB 00:00 (12/154): file-5.44-3.fc38.x86_64.rpm 2.0 MB/s | 49 kB 00:00 (13/154): findutils-4.9.0-3.fc38.x86_64.rpm 15 MB/s | 492 kB 00:00 (14/154): file-libs-5.44-3.fc38.x86_64.rpm 11 MB/s | 730 kB 00:00 (15/154): fonts-srpm-macros-2.0.5-11.fc38.noarc 1.1 MB/s | 26 kB 00:00 (16/154): filesystem-3.18-3.fc38.x86_64.rpm 14 MB/s | 1.1 MB 00:00 (17/154): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 328 kB/s | 7.8 kB 00:00 (18/154): gdbm-libs-1.23-3.fc38.x86_64.rpm 2.3 MB/s | 56 kB 00:00 (19/154): gawk-5.1.1-5.fc38.x86_64.rpm 23 MB/s | 1.0 MB 00:00 (20/154): ghc-srpm-macros-1.6.1-1.fc38.noarch.r 324 kB/s | 8.0 kB 00:00 (21/154): gmp-6.2.1-4.fc38.x86_64.rpm 11 MB/s | 313 kB 00:00 (22/154): gnat-srpm-macros-6-2.fc38.noarch.rpm 368 kB/s | 8.8 kB 00:00 (23/154): grep-3.8-3.fc38.x86_64.rpm 9.6 MB/s | 293 kB 00:00 (24/154): gzip-1.12-3.fc38.x86_64.rpm 6.2 MB/s | 166 kB 00:00 (25/154): info-7.0.2-2.fc38.x86_64.rpm 6.7 MB/s | 181 kB 00:00 (26/154): jansson-2.13.1-6.fc38.x86_64.rpm 1.7 MB/s | 44 kB 00:00 (27/154): libarchive-3.6.1-4.fc38.x86_64.rpm 11 MB/s | 400 kB 00:00 (28/154): libattr-2.5.1-6.fc38.x86_64.rpm 634 kB/s | 18 kB 00:00 (29/154): libblkid-2.38.1-4.fc38.x86_64.rpm 3.7 MB/s | 106 kB 00:00 (30/154): libcom_err-1.46.5-4.fc38.x86_64.rpm 970 kB/s | 26 kB 00:00 (31/154): libbrotli-1.0.9-11.fc38.x86_64.rpm 10 MB/s | 317 kB 00:00 (32/154): libdb-5.3.28-55.fc38.x86_64.rpm 15 MB/s | 758 kB 00:00 (33/154): libffi-3.4.4-2.fc38.x86_64.rpm 1.4 MB/s | 38 kB 00:00 (34/154): libmount-2.38.1-4.fc38.x86_64.rpm 4.0 MB/s | 135 kB 00:00 (35/154): libevent-2.1.12-8.fc38.x86_64.rpm 2.8 MB/s | 257 kB 00:00 (36/154): libnsl2-2.0.0-5.fc38.x86_64.rpm 994 kB/s | 30 kB 00:00 (37/154): libpkgconf-1.8.0-6.fc38.x86_64.rpm 1.2 MB/s | 35 kB 00:00 (38/154): libfdisk-2.38.1-4.fc38.x86_64.rpm 1.1 MB/s | 161 kB 00:00 (39/154): libpsl-0.21.2-2.fc38.x86_64.rpm 2.5 MB/s | 65 kB 00:00 (40/154): libpwquality-1.4.5-3.fc38.x86_64.rpm 4.7 MB/s | 119 kB 00:00 (41/154): libsemanage-3.5-2.fc38.x86_64.rpm 4.6 MB/s | 120 kB 00:00 (42/154): libselinux-3.5-1.fc38.x86_64.rpm 3.1 MB/s | 87 kB 00:00 (43/154): libsepol-3.5-1.fc38.x86_64.rpm 11 MB/s | 324 kB 00:00 (44/154): libsigsegv-2.14-4.fc38.x86_64.rpm 806 kB/s | 27 kB 00:00 (45/154): libtasn1-4.19.0-2.fc38.x86_64.rpm 834 kB/s | 74 kB 00:00 (46/154): libunistring-1.1-3.fc38.x86_64.rpm 8.4 MB/s | 545 kB 00:00 (47/154): libutempter-1.2.1-8.fc38.x86_64.rpm 1.1 MB/s | 26 kB 00:00 (48/154): libunistring1.0-1.0-1.fc38.x86_64.rpm 15 MB/s | 539 kB 00:00 (49/154): libuuid-2.38.1-4.fc38.x86_64.rpm 1.2 MB/s | 28 kB 00:00 (50/154): libverto-0.3.2-5.fc38.x86_64.rpm 791 kB/s | 21 kB 00:00 (51/154): lua-libs-5.4.4-9.fc38.x86_64.rpm 5.2 MB/s | 133 kB 00:00 (52/154): lz4-libs-1.9.4-2.fc38.x86_64.rpm 2.6 MB/s | 67 kB 00:00 (53/154): mpfr-4.1.1-3.fc38.x86_64.rpm 18 MB/s | 600 kB 00:00 (54/154): ocaml-srpm-macros-7-3.fc38.noarch.rpm 569 kB/s | 13 kB 00:00 (55/154): openblas-srpm-macros-2-13.fc38.noarch 283 kB/s | 7.5 kB 00:00 (56/154): pam-1.5.2-16.fc38.x86_64.rpm 15 MB/s | 560 kB 00:00 (57/154): pam-libs-1.5.2-16.fc38.x86_64.rpm 1.7 MB/s | 58 kB 00:00 (58/154): libsmartcols-2.38.1-4.fc38.x86_64.rpm 234 kB/s | 64 kB 00:00 (59/154): pcre2-10.42-1.fc38.1.x86_64.rpm 8.8 MB/s | 234 kB 00:00 (60/154): perl-srpm-macros-1-48.fc38.noarch.rpm 329 kB/s | 8.4 kB 00:00 (61/154): patch-2.7.6-19.fc38.x86_64.rpm 1.5 MB/s | 126 kB 00:00 (62/154): pkgconf-1.8.0-6.fc38.x86_64.rpm 1.7 MB/s | 41 kB 00:00 (63/154): pkgconf-m4-1.8.0-6.fc38.noarch.rpm 590 kB/s | 14 kB 00:00 (64/154): pkgconf-pkg-config-1.8.0-6.fc38.x86_6 373 kB/s | 9.6 kB 00:00 (65/154): popt-1.19-2.fc38.x86_64.rpm 2.6 MB/s | 67 kB 00:00 (66/154): pcre2-syntax-10.42-1.fc38.1.noarch.rp 1.5 MB/s | 144 kB 00:00 (67/154): python-srpm-macros-3.11-10.fc38.noarc 1.0 MB/s | 26 kB 00:00 (68/154): sed-4.8-12.fc38.x86_64.rpm 10 MB/s | 306 kB 00:00 (69/154): shadow-utils-4.13-6.fc38.x86_64.rpm 27 MB/s | 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elfutils-libs-0.191-1.fc38.x86_64.rpm 8.2 MB/s | 263 kB 00:00 (100/154): fedora-release-38-36.noarch.rpm 861 kB/s | 12 kB 00:00 (101/154): fedora-release-common-38-36.noarch.r 1.5 MB/s | 22 kB 00:00 (102/154): fedora-release-identity-basic-38-36. 913 kB/s | 13 kB 00:00 (103/154): forge-srpm-macros-0.2.0-3.fc38.noarc 1.3 MB/s | 19 kB 00:00 (104/154): glibc-common-2.37-18.fc38.x86_64.rpm 8.9 MB/s | 320 kB 00:00 (105/154): glibc-2.37-18.fc38.x86_64.rpm 12 MB/s | 2.1 MB 00:00 (106/154): glibc-gconv-extra-2.37-18.fc38.x86_6 11 MB/s | 1.6 MB 00:00 (107/154): glibc-minimal-langpack-2.37-18.fc38. 2.7 MB/s | 41 kB 00:00 (108/154): go-srpm-macros-3.5.0-1.fc38.noarch.r 1.9 MB/s | 27 kB 00:00 (109/154): kernel-srpm-macros-1.0-19.fc38.noarc 730 kB/s | 10 kB 00:00 (110/154): keyutils-libs-1.6.3-1.fc38.x86_64.rp 2.1 MB/s | 31 kB 00:00 (111/154): libacl-2.3.1-7.fc38.x86_64.rpm 1.6 MB/s | 23 kB 00:00 (112/154): libcap-2.48-8.fc38.x86_64.rpm 4.5 MB/s | 68 kB 00:00 (113/154): 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| 870 kB 00:00 (128/154): lua-srpm-macros-1-13.fc38.noarch.rpm 561 kB/s | 8.7 kB 00:00 (129/154): ncurses-base-6.4-7.20230520.fc38.1.n 5.4 MB/s | 88 kB 00:00 (130/154): libxml2-2.10.4-1.fc38.x86_64.rpm 10 MB/s | 701 kB 00:00 (131/154): openldap-2.6.6-1.fc38.x86_64.rpm 7.7 MB/s | 254 kB 00:00 (132/154): ncurses-libs-6.4-7.20230520.fc38.1.x 8.3 MB/s | 336 kB 00:00 (133/154): p11-kit-trust-0.25.3-1.fc38.x86_64.r 7.9 MB/s | 142 kB 00:00 (134/154): package-notes-srpm-macros-0.5-8.fc38 746 kB/s | 11 kB 00:00 (135/154): publicsuffix-list-dafsa-20240107-1.f 3.0 MB/s | 58 kB 00:00 (136/154): pyproject-srpm-macros-1.12.0-1.fc38. 953 kB/s | 14 kB 00:00 (137/154): p11-kit-0.25.3-1.fc38.x86_64.rpm 6.6 MB/s | 521 kB 00:00 (138/154): qt5-srpm-macros-5.15.12-1.fc38.noarc 584 kB/s | 8.3 kB 00:00 (139/154): qt6-srpm-macros-6.6.0-1.fc38.noarch. 598 kB/s | 8.6 kB 00:00 (140/154): readline-8.2-4.fc38.x86_64.rpm 11 MB/s | 212 kB 00:00 (141/154): redhat-rpm-config-257-1.fc38.noarch. 4.9 MB/s | 76 kB 00:00 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fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-3.fc38.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-7.fc38.x86_64 1/154 Running scriptlet: libgcc-13.2.1-7.fc38.x86_64 1/154 Installing : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 2/154 Running scriptlet: crypto-policies-20230301-1.gita12f7b2.fc38.noarc 2/154 Installing : tzdata-2024a-1.fc38.noarch 3/154 Installing : fedora-release-identity-basic-38-36.noarch 4/154 Installing : rust-srpm-macros-26.2-1.fc38.noarch 5/154 Installing : qt6-srpm-macros-6.6.0-1.fc38.noarch 6/154 Installing : qt5-srpm-macros-5.15.12-1.fc38.noarch 7/154 Installing : publicsuffix-list-dafsa-20240107-1.fc38.noarch 8/154 Installing : package-notes-srpm-macros-0.5-8.fc38.noarch 9/154 Installing : ncurses-base-6.4-7.20230520.fc38.1.noarch 10/154 Installing : libssh-config-0.10.6-2.fc38.noarch 11/154 Installing : kernel-srpm-macros-1.0-19.fc38.noarch 12/154 Installing : coreutils-common-9.1-12.fc38.x86_64 13/154 Installing : 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Installing : libunistring1.0-1.0-1.fc38.x86_64 118/154 Installing : libpsl-0.21.2-2.fc38.x86_64 119/154 Installing : libverto-0.3.2-5.fc38.x86_64 120/154 Installing : diffutils-3.10-1.fc38.x86_64 121/154 Installing : keyutils-libs-1.6.3-1.fc38.x86_64 122/154 Installing : krb5-libs-1.21-3.fc38.x86_64 123/154 Installing : libtirpc-1.3.4-1.rc3.fc38.x86_64 124/154 Installing : libnsl2-2.0.0-5.fc38.x86_64 125/154 Installing : pam-1.5.2-16.fc38.x86_64 126/154 Installing : libssh-0.10.6-2.fc38.x86_64 127/154 Installing : libgomp-13.2.1-7.fc38.x86_64 128/154 Installing : libnghttp2-1.52.0-2.fc38.x86_64 129/154 Installing : libcurl-8.0.1-7.fc38.x86_64 130/154 Installing : elfutils-libs-0.191-1.fc38.x86_64 131/154 Installing : elfutils-debuginfod-client-0.191-1.fc38.x86_64 132/154 Installing : binutils-gold-2.39-16.fc38.x86_64 133/154 Installing : binutils-2.39-16.fc38.x86_64 134/154 Running scriptlet: binutils-2.39-16.fc38.x86_64 134/154 Installing : elfutils-0.191-1.fc38.x86_64 135/154 Installing : rpm-build-libs-4.18.2-1.fc38.x86_64 136/154 Installing : curl-8.0.1-7.fc38.x86_64 137/154 Running scriptlet: rpm-4.18.2-1.fc38.x86_64 138/154 Installing : rpm-4.18.2-1.fc38.x86_64 138/154 Installing : efi-srpm-macros-5-7.fc38.noarch 139/154 Installing : lua-srpm-macros-1-13.fc38.noarch 140/154 Installing : rpmautospec-rpm-macros-0.6.3-1.fc38.noarch 141/154 Installing : xxhash-libs-0.8.2-1.fc38.x86_64 142/154 Installing : gdb-minimal-14.1-3.fc38.x86_64 143/154 Installing : debugedit-5.0-9.fc38.x86_64 144/154 Installing : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 145/154 Installing : python-srpm-macros-3.11-10.fc38.noarch 146/154 Installing : forge-srpm-macros-0.2.0-3.fc38.noarch 147/154 Installing : go-srpm-macros-3.5.0-1.fc38.noarch 148/154 Installing : redhat-rpm-config-257-1.fc38.noarch 149/154 Installing : rpm-build-4.18.2-1.fc38.x86_64 150/154 Installing : pyproject-srpm-macros-1.12.0-1.fc38.noarch 151/154 Installing : util-linux-2.38.1-4.fc38.x86_64 152/154 Installing : which-2.21-39.fc38.x86_64 153/154 Installing : info-7.0.2-2.fc38.x86_64 154/154 Running scriptlet: filesystem-3.18-3.fc38.x86_64 154/154 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noar 154/154 Running scriptlet: authselect-libs-1.4.3-1.fc38.x86_64 154/154 Running scriptlet: rpm-4.18.2-1.fc38.x86_64 154/154 Running scriptlet: info-7.0.2-2.fc38.x86_64 154/154 Verifying : basesystem-11-15.fc38.noarch 1/154 Verifying : bzip2-1.0.8-13.fc38.x86_64 2/154 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 3/154 Verifying : cpio-2.13-14.fc38.x86_64 4/154 Verifying : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 5/154 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 6/154 Verifying : dwz-0.15-2.fc38.x86_64 7/154 Verifying : ed-1.19-2.fc38.x86_64 8/154 Verifying : efi-srpm-macros-5-7.fc38.noarch 9/154 Verifying : fedora-gpg-keys-38-1.noarch 10/154 Verifying : fedora-repos-38-1.noarch 11/154 Verifying : file-5.44-3.fc38.x86_64 12/154 Verifying : file-libs-5.44-3.fc38.x86_64 13/154 Verifying : filesystem-3.18-3.fc38.x86_64 14/154 Verifying : findutils-1:4.9.0-3.fc38.x86_64 15/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 16/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 17/154 Verifying : gawk-5.1.1-5.fc38.x86_64 18/154 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 19/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 20/154 Verifying : gmp-1:6.2.1-4.fc38.x86_64 21/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 22/154 Verifying : grep-3.8-3.fc38.x86_64 23/154 Verifying : gzip-1.12-3.fc38.x86_64 24/154 Verifying : info-7.0.2-2.fc38.x86_64 25/154 Verifying : jansson-2.13.1-6.fc38.x86_64 26/154 Verifying : libarchive-3.6.1-4.fc38.x86_64 27/154 Verifying : libattr-2.5.1-6.fc38.x86_64 28/154 Verifying : libblkid-2.38.1-4.fc38.x86_64 29/154 Verifying : libbrotli-1.0.9-11.fc38.x86_64 30/154 Verifying : libcom_err-1.46.5-4.fc38.x86_64 31/154 Verifying : libdb-5.3.28-55.fc38.x86_64 32/154 Verifying : libevent-2.1.12-8.fc38.x86_64 33/154 Verifying : libfdisk-2.38.1-4.fc38.x86_64 34/154 Verifying : libffi-3.4.4-2.fc38.x86_64 35/154 Verifying : libmount-2.38.1-4.fc38.x86_64 36/154 Verifying : libnsl2-2.0.0-5.fc38.x86_64 37/154 Verifying : libpkgconf-1.8.0-6.fc38.x86_64 38/154 Verifying : libpsl-0.21.2-2.fc38.x86_64 39/154 Verifying : libpwquality-1.4.5-3.fc38.x86_64 40/154 Verifying : libselinux-3.5-1.fc38.x86_64 41/154 Verifying : libsemanage-3.5-2.fc38.x86_64 42/154 Verifying : libsepol-3.5-1.fc38.x86_64 43/154 Verifying : libsigsegv-2.14-4.fc38.x86_64 44/154 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 45/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 46/154 Verifying : libunistring-1.1-3.fc38.x86_64 47/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 48/154 Verifying : libutempter-1.2.1-8.fc38.x86_64 49/154 Verifying : libuuid-2.38.1-4.fc38.x86_64 50/154 Verifying : libverto-0.3.2-5.fc38.x86_64 51/154 Verifying : lua-libs-5.4.4-9.fc38.x86_64 52/154 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 53/154 Verifying : mpfr-4.1.1-3.fc38.x86_64 54/154 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 55/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 56/154 Verifying : pam-1.5.2-16.fc38.x86_64 57/154 Verifying : pam-libs-1.5.2-16.fc38.x86_64 58/154 Verifying : patch-2.7.6-19.fc38.x86_64 59/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 60/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 61/154 Verifying : perl-srpm-macros-1-48.fc38.noarch 62/154 Verifying : pkgconf-1.8.0-6.fc38.x86_64 63/154 Verifying : pkgconf-m4-1.8.0-6.fc38.noarch 64/154 Verifying : pkgconf-pkg-config-1.8.0-6.fc38.x86_64 65/154 Verifying : popt-1.19-2.fc38.x86_64 66/154 Verifying : python-srpm-macros-3.11-10.fc38.noarch 67/154 Verifying : sed-4.8-12.fc38.x86_64 68/154 Verifying : setup-2.14.3-2.fc38.noarch 69/154 Verifying : shadow-utils-2:4.13-6.fc38.x86_64 70/154 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 71/154 Verifying : tar-2:1.34-8.fc38.x86_64 72/154 Verifying : unzip-6.0-60.fc38.x86_64 73/154 Verifying : util-linux-2.38.1-4.fc38.x86_64 74/154 Verifying : util-linux-core-2.38.1-4.fc38.x86_64 75/154 Verifying : which-2.21-39.fc38.x86_64 76/154 Verifying : xz-5.4.1-1.fc38.x86_64 77/154 Verifying : xz-libs-5.4.1-1.fc38.x86_64 78/154 Verifying : zlib-1.2.13-3.fc38.x86_64 79/154 Verifying : alternatives-1.26-1.fc38.x86_64 80/154 Verifying : ansible-srpm-macros-1-12.fc38.noarch 81/154 Verifying : audit-libs-3.1.2-8.fc38.x86_64 82/154 Verifying : authselect-1.4.3-1.fc38.x86_64 83/154 Verifying : authselect-libs-1.4.3-1.fc38.x86_64 84/154 Verifying : bash-5.2.26-1.fc38.x86_64 85/154 Verifying : binutils-2.39-16.fc38.x86_64 86/154 Verifying : binutils-gold-2.39-16.fc38.x86_64 87/154 Verifying : ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noar 88/154 Verifying : coreutils-9.1-12.fc38.x86_64 89/154 Verifying : coreutils-common-9.1-12.fc38.x86_64 90/154 Verifying : cracklib-2.9.11-1.fc38.x86_64 91/154 Verifying : curl-8.0.1-7.fc38.x86_64 92/154 Verifying : debugedit-5.0-9.fc38.x86_64 93/154 Verifying : diffutils-3.10-1.fc38.x86_64 94/154 Verifying : elfutils-0.191-1.fc38.x86_64 95/154 Verifying : elfutils-debuginfod-client-0.191-1.fc38.x86_64 96/154 Verifying : elfutils-default-yama-scope-0.191-1.fc38.noarch 97/154 Verifying : elfutils-libelf-0.191-1.fc38.x86_64 98/154 Verifying : elfutils-libs-0.191-1.fc38.x86_64 99/154 Verifying : fedora-release-38-36.noarch 100/154 Verifying : fedora-release-common-38-36.noarch 101/154 Verifying : fedora-release-identity-basic-38-36.noarch 102/154 Verifying : forge-srpm-macros-0.2.0-3.fc38.noarch 103/154 Verifying : gdb-minimal-14.1-3.fc38.x86_64 104/154 Verifying : glibc-2.37-18.fc38.x86_64 105/154 Verifying : glibc-common-2.37-18.fc38.x86_64 106/154 Verifying : glibc-gconv-extra-2.37-18.fc38.x86_64 107/154 Verifying : glibc-minimal-langpack-2.37-18.fc38.x86_64 108/154 Verifying : go-srpm-macros-3.5.0-1.fc38.noarch 109/154 Verifying : kernel-srpm-macros-1.0-19.fc38.noarch 110/154 Verifying : keyutils-libs-1.6.3-1.fc38.x86_64 111/154 Verifying : krb5-libs-1.21-3.fc38.x86_64 112/154 Verifying : libacl-2.3.1-7.fc38.x86_64 113/154 Verifying : libcap-2.48-8.fc38.x86_64 114/154 Verifying : libcap-ng-0.8.3-8.fc38.x86_64 115/154 Verifying : libcurl-8.0.1-7.fc38.x86_64 116/154 Verifying : libeconf-0.5.2-1.fc38.x86_64 117/154 Verifying : libgcc-13.2.1-7.fc38.x86_64 118/154 Verifying : libgomp-13.2.1-7.fc38.x86_64 119/154 Verifying : libidn2-2.3.7-1.fc38.x86_64 120/154 Verifying : libnghttp2-1.52.0-2.fc38.x86_64 121/154 Verifying : libssh-0.10.6-2.fc38.x86_64 122/154 Verifying : libssh-config-0.10.6-2.fc38.noarch 123/154 Verifying : libstdc++-13.2.1-7.fc38.x86_64 124/154 Verifying : libtirpc-1.3.4-1.rc3.fc38.x86_64 125/154 Verifying : libxcrypt-4.4.36-1.fc38.x86_64 126/154 Verifying : libxml2-2.10.4-1.fc38.x86_64 127/154 Verifying : libzstd-1.5.5-1.fc38.x86_64 128/154 Verifying : lua-srpm-macros-1-13.fc38.noarch 129/154 Verifying : ncurses-base-6.4-7.20230520.fc38.1.noarch 130/154 Verifying : ncurses-libs-6.4-7.20230520.fc38.1.x86_64 131/154 Verifying : openldap-2.6.6-1.fc38.x86_64 132/154 Verifying : openssl-libs-1:3.0.9-2.fc38.x86_64 133/154 Verifying : p11-kit-0.25.3-1.fc38.x86_64 134/154 Verifying : p11-kit-trust-0.25.3-1.fc38.x86_64 135/154 Verifying : package-notes-srpm-macros-0.5-8.fc38.noarch 136/154 Verifying : publicsuffix-list-dafsa-20240107-1.fc38.noarch 137/154 Verifying : pyproject-srpm-macros-1.12.0-1.fc38.noarch 138/154 Verifying : qt5-srpm-macros-5.15.12-1.fc38.noarch 139/154 Verifying : qt6-srpm-macros-6.6.0-1.fc38.noarch 140/154 Verifying : readline-8.2-4.fc38.x86_64 141/154 Verifying : redhat-rpm-config-257-1.fc38.noarch 142/154 Verifying : rpm-4.18.2-1.fc38.x86_64 143/154 Verifying : rpm-build-4.18.2-1.fc38.x86_64 144/154 Verifying : rpm-build-libs-4.18.2-1.fc38.x86_64 145/154 Verifying : rpm-libs-4.18.2-1.fc38.x86_64 146/154 Verifying : rpm-sequoia-1.6.0-1.fc38.x86_64 147/154 Verifying : rpmautospec-rpm-macros-0.6.3-1.fc38.noarch 148/154 Verifying : rust-srpm-macros-26.2-1.fc38.noarch 149/154 Verifying : systemd-libs-253.17-1.fc38.x86_64 150/154 Verifying : tzdata-2024a-1.fc38.noarch 151/154 Verifying : xxhash-libs-0.8.2-1.fc38.x86_64 152/154 Verifying : zip-3.0-37.fc38.x86_64 153/154 Verifying : zstd-1.5.5-1.fc38.x86_64 154/154 Installed products updated. Installed: alternatives-1.26-1.fc38.x86_64 ansible-srpm-macros-1-12.fc38.noarch audit-libs-3.1.2-8.fc38.x86_64 authselect-1.4.3-1.fc38.x86_64 authselect-libs-1.4.3-1.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.26-1.fc38.x86_64 binutils-2.39-16.fc38.x86_64 binutils-gold-2.39-16.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.11-1.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-7.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-9.fc38.x86_64 diffutils-3.10-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.191-1.fc38.x86_64 elfutils-debuginfod-client-0.191-1.fc38.x86_64 elfutils-default-yama-scope-0.191-1.fc38.noarch elfutils-libelf-0.191-1.fc38.x86_64 elfutils-libs-0.191-1.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-5.44-3.fc38.x86_64 file-libs-5.44-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch forge-srpm-macros-0.2.0-3.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-14.1-3.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-18.fc38.x86_64 glibc-common-2.37-18.fc38.x86_64 glibc-gconv-extra-2.37-18.fc38.x86_64 glibc-minimal-langpack-2.37-18.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.5.0-1.fc38.noarch grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch keyutils-libs-1.6.3-1.fc38.x86_64 krb5-libs-1.21-3.fc38.x86_64 libacl-2.3.1-7.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-8.fc38.x86_64 libcap-ng-0.8.3-8.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-7.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.5.2-1.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.2.1-7.fc38.x86_64 libgomp-13.2.1-7.fc38.x86_64 libidn2-2.3.7-1.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-2.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.6-2.fc38.x86_64 libssh-config-0.10.6-2.fc38.noarch libstdc++-13.2.1-7.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.4-1.rc3.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-13.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-7.20230520.fc38.1.noarch ncurses-libs-6.4-7.20230520.fc38.1.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.6-1.fc38.x86_64 openssl-libs-1:3.0.9-2.fc38.x86_64 p11-kit-0.25.3-1.fc38.x86_64 p11-kit-trust-0.25.3-1.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20240107-1.fc38.noarch pyproject-srpm-macros-1.12.0-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.12-1.fc38.noarch qt6-srpm-macros-6.6.0-1.fc38.noarch readline-8.2-4.fc38.x86_64 redhat-rpm-config-257-1.fc38.noarch rpm-4.18.2-1.fc38.x86_64 rpm-build-4.18.2-1.fc38.x86_64 rpm-build-libs-4.18.2-1.fc38.x86_64 rpm-libs-4.18.2-1.fc38.x86_64 rpm-sequoia-1.6.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc38.noarch rust-srpm-macros-26.2-1.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.17-1.fc38.x86_64 tar-2:1.34-8.fc38.x86_64 tzdata-2024a-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.2-1.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-37.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc38.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc38.x86_64 ansible-srpm-macros-1-12.fc38.noarch audit-libs-3.1.2-8.fc38.x86_64 authselect-1.4.3-1.fc38.x86_64 authselect-libs-1.4.3-1.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.26-1.fc38.x86_64 binutils-2.39-16.fc38.x86_64 binutils-gold-2.39-16.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.11-1.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-7.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-9.fc38.x86_64 diffutils-3.10-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.191-1.fc38.x86_64 elfutils-debuginfod-client-0.191-1.fc38.x86_64 elfutils-default-yama-scope-0.191-1.fc38.noarch elfutils-libelf-0.191-1.fc38.x86_64 elfutils-libs-0.191-1.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-5.44-3.fc38.x86_64 file-libs-5.44-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-4.9.0-3.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch forge-srpm-macros-0.2.0-3.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-14.1-3.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-18.fc38.x86_64 glibc-common-2.37-18.fc38.x86_64 glibc-gconv-extra-2.37-18.fc38.x86_64 glibc-minimal-langpack-2.37-18.fc38.x86_64 gmp-6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.5.0-1.fc38.noarch gpg-pubkey-eb10b464-6202d9c6 grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch keyutils-libs-1.6.3-1.fc38.x86_64 krb5-libs-1.21-3.fc38.x86_64 libacl-2.3.1-7.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-8.fc38.x86_64 libcap-ng-0.8.3-8.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-7.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.5.2-1.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.2.1-7.fc38.x86_64 libgomp-13.2.1-7.fc38.x86_64 libidn2-2.3.7-1.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-2.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.6-2.fc38.x86_64 libssh-config-0.10.6-2.fc38.noarch libstdc++-13.2.1-7.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.4-1.rc3.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-13.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-7.20230520.fc38.1.noarch ncurses-libs-6.4-7.20230520.fc38.1.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.6-1.fc38.x86_64 openssl-libs-3.0.9-2.fc38.x86_64 p11-kit-0.25.3-1.fc38.x86_64 p11-kit-trust-0.25.3-1.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20240107-1.fc38.noarch pyproject-srpm-macros-1.12.0-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.12-1.fc38.noarch qt6-srpm-macros-6.6.0-1.fc38.noarch readline-8.2-4.fc38.x86_64 redhat-rpm-config-257-1.fc38.noarch rpm-4.18.2-1.fc38.x86_64 rpm-build-4.18.2-1.fc38.x86_64 rpm-build-libs-4.18.2-1.fc38.x86_64 rpm-libs-4.18.2-1.fc38.x86_64 rpm-sequoia-1.6.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc38.noarch rust-srpm-macros-26.2-1.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.17-1.fc38.x86_64 tar-1.34-8.fc38.x86_64 tzdata-2024a-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.2-1.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-37.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-38-x86_64-1713089197.581341/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1713089197.581341/root/var/log/dnf.log /var/lib/mock/fedora-38-x86_64-1713089197.581341/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1713089197.581341/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-8xotfdqo/R-CRAN-spAbundance/R-CRAN-spAbundance.spec) Config(child) 1 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm) Config(fedora-38-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1713089197.581341/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm Start: build setup for R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. 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Copr repository 32 kB/s | 1.5 kB 00:00 Copr repository 40 MB/s | 42 MB 00:01 fedora 70 kB/s | 24 kB 00:00 updates 153 kB/s | 21 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-RANN x86_64 2.6.1-3.fc38.copr5812281 copr_base 53 k R-CRAN-abind noarch 1.4.5-3.fc38.copr5812119 copr_base 78 k R-CRAN-coda noarch 0.19.4.1-1.fc38.copr6978195 copr_base 361 k R-CRAN-doParallel noarch 1.0.17-1.fc38.copr5817836 copr_base 195 k R-CRAN-foreach noarch 1.5.2-1.fc38.copr5815655 copr_base 142 k R-CRAN-lme4 x86_64 1.1.35.2-1.fc38.copr7307303 copr_base 4.1 M R-core x86_64 4.3.3-1.fc38 updates 64 M R-devel x86_64 4.3.3-1.fc38 updates 10 k Installing dependencies: R-CRAN-MASS x86_64 7.3.60.0.1-1.fc38.copr6895092 copr_base 1.2 M R-CRAN-Matrix x86_64 1.6.5-1.fc38.copr6886765 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.12-1.fc38.copr6877523 copr_base 2.0 M R-CRAN-boot noarch 1.3.30-1.fc38.copr7307080 copr_base 700 k R-CRAN-codetools noarch 0.2.20-1.fc38.copr7307081 copr_base 103 k R-CRAN-iterators noarch 1.0.14-1.fc38.copr5812211 copr_base 348 k R-CRAN-lattice x86_64 0.22.6-1.fc38.copr7307082 copr_base 1.4 M R-CRAN-minqa x86_64 1.2.6-1.fc38.copr6395773 copr_base 125 k R-CRAN-nlme x86_64 3.1.164-1.fc38.copr6700968 copr_base 2.4 M R-CRAN-nloptr x86_64 2.0.3-1.fc38.copr5831161 copr_base 700 k R-core-devel x86_64 4.3.3-1.fc38 updates 94 k R-java x86_64 4.3.3-1.fc38 updates 11 k R-java-devel x86_64 4.3.3-1.fc38 updates 10 k R-littler x86_64 0.3.19-1.fc38 updates 76 k R-rpm-macros noarch 1.2.1-6.fc38 fedora 11 k alsa-lib x86_64 1.2.11-2.fc38 updates 520 k annobin-docs noarch 12.40-1.fc38 updates 87 k annobin-plugin-gcc x86_64 12.40-1.fc38 updates 955 k avahi-libs x86_64 0.8-22.fc38 updates 66 k brotli x86_64 1.0.9-11.fc38 fedora 316 k brotli-devel x86_64 1.0.9-11.fc38 fedora 31 k bzip2-devel x86_64 1.0.8-13.fc38 fedora 214 k cairo x86_64 1.17.8-4.fc38 updates 704 k cmake-filesystem x86_64 3.27.7-1.fc38 updates 19 k copy-jdk-configs noarch 4.1-2.fc38 fedora 28 k cpp x86_64 13.2.1-7.fc38 updates 11 M crypto-policies-scripts noarch 20230301-1.gita12f7b2.fc38 fedora 116 k cups-libs x86_64 1:2.4.7-11.fc38 updates 268 k dbus-libs x86_64 1:1.14.10-1.fc38 updates 156 k desktop-file-utils x86_64 0.26-8.fc38 fedora 71 k emacs-filesystem noarch 1:29.3-1.fc38 updates 7.2 k expat x86_64 2.6.0-1.fc38 updates 112 k flexiblas x86_64 3.4.2-1.fc38 updates 25 k flexiblas-devel x86_64 3.4.2-1.fc38 updates 121 k flexiblas-netlib x86_64 3.4.2-1.fc38 updates 3.1 M flexiblas-netlib64 x86_64 3.4.2-1.fc38 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.2-1.fc38 updates 17 k flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc38 updates 17 k fontconfig x86_64 2.14.2-2.fc38 updates 295 k fontconfig-devel x86_64 2.14.2-2.fc38 updates 163 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.0-2.fc38 fedora 414 k freetype-devel x86_64 2.13.0-2.fc38 fedora 945 k fribidi x86_64 1.0.12-3.fc38 fedora 89 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc x86_64 13.2.1-7.fc38 updates 34 M gcc-c++ x86_64 13.2.1-7.fc38 updates 13 M gcc-gfortran x86_64 13.2.1-7.fc38 updates 12 M gcc-plugin-annobin x86_64 13.2.1-7.fc38 updates 52 k gettext x86_64 0.21.1-2.fc38 fedora 1.0 M gettext-envsubst x86_64 0.21.1-2.fc38 fedora 36 k gettext-libs x86_64 0.21.1-2.fc38 fedora 320 k gettext-runtime x86_64 0.21.1-2.fc38 fedora 117 k glib2 x86_64 2.76.6-1.fc38 updates 2.8 M glib2-devel x86_64 2.76.6-1.fc38 updates 586 k glibc-devel x86_64 2.37-18.fc38 updates 54 k glibc-headers-x86 noarch 2.37-18.fc38 updates 536 k gnutls x86_64 3.8.4-1.fc38 updates 1.1 M google-noto-fonts-common noarch 20230201-2.fc38 updates 16 k google-noto-sans-vf-fonts noarch 20230201-2.fc38 updates 579 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k graphite2-devel x86_64 1.3.14-11.fc38 fedora 20 k guile22 x86_64 2.2.7-7.fc38 fedora 6.5 M harfbuzz x86_64 7.1.0-1.fc38 fedora 889 k harfbuzz-devel x86_64 7.1.0-1.fc38 fedora 445 k harfbuzz-icu x86_64 7.1.0-1.fc38 fedora 16 k java-17-openjdk x86_64 1:17.0.9.0.9-3.fc38 updates 407 k java-17-openjdk-devel x86_64 1:17.0.9.0.9-3.fc38 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.9.0.9-3.fc38 updates 44 M javapackages-filesystem noarch 6.1.0-7.fc38 fedora 13 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k kernel-headers x86_64 6.8.3-100.fc38 updates 1.6 M langpacks-core-font-en noarch 3.0-32.fc38 updates 9.6 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libRmath x86_64 4.3.3-1.fc38 updates 122 k libRmath-devel x86_64 4.3.3-1.fc38 updates 16 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libX11 x86_64 1.8.7-1.fc38 updates 650 k libX11-common noarch 1.8.7-1.fc38 updates 176 k libX11-devel x86_64 1.8.7-1.fc38 updates 1.0 M libX11-xcb x86_64 1.8.7-1.fc38 updates 12 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXcomposite x86_64 0.4.5-9.fc38 fedora 23 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXft x86_64 2.3.8-2.fc38 updates 72 k libXft-devel x86_64 2.3.8-2.fc38 updates 50 k libXi x86_64 1.8.1-1.fc38 updates 40 k libXmu x86_64 1.1.4-2.fc38 fedora 77 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXrender-devel x86_64 0.9.11-2.fc38 fedora 19 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libXtst x86_64 1.2.4-2.fc38 fedora 20 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid-devel x86_64 2.38.1-4.fc38 fedora 16 k libdatrie x86_64 0.2.13-5.fc38 fedora 32 k libffi-devel x86_64 3.4.4-2.fc38 fedora 29 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.2.1-7.fc38 updates 910 k libicu x86_64 72.1-2.fc38 fedora 10 M libicu-devel x86_64 72.1-2.fc38 fedora 918 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k liblerc x86_64 4.0.0-3.fc38 fedora 202 k libmount-devel x86_64 2.38.1-4.fc38 fedora 18 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libpng-devel x86_64 2:1.6.37-14.fc38 fedora 291 k libquadmath x86_64 13.2.1-7.fc38 updates 200 k libquadmath-devel x86_64 13.2.1-7.fc38 updates 41 k libselinux-devel x86_64 3.5-1.fc38 fedora 151 k libsepol-devel x86_64 3.5-1.fc38 fedora 49 k libstdc++-devel x86_64 13.2.1-7.fc38 updates 2.6 M libthai x86_64 0.1.29-4.fc38 fedora 213 k libtiff x86_64 4.4.0-8.fc38 updates 201 k libtirpc-devel x86_64 1.3.4-1.rc3.fc38 updates 124 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libwebp x86_64 1.3.2-2.fc38 updates 284 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-1.fc38 updates 30 k libxml2-devel x86_64 2.10.4-1.fc38 updates 531 k lksctp-tools x86_64 1.0.19-3.fc38 fedora 92 k lua x86_64 5.4.4-9.fc38 fedora 190 k lua-posix x86_64 35.1-5.fc38 fedora 138 k make x86_64 1:4.4.1-1.fc38 updates 588 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k nettle x86_64 3.8-3.fc38 fedora 412 k nspr x86_64 4.35.0-17.fc38 updates 137 k nss x86_64 3.99.0-1.fc38 updates 703 k nss-softokn x86_64 3.99.0-1.fc38 updates 419 k nss-softokn-freebl x86_64 3.99.0-1.fc38 updates 381 k nss-sysinit x86_64 3.99.0-1.fc38 updates 18 k nss-util x86_64 3.99.0-1.fc38 updates 87 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openblas-openmp64 x86_64 0.3.21-4.fc38 fedora 4.9 M pango x86_64 1.50.14-1.fc38 fedora 342 k pcre2-devel x86_64 10.42-1.fc38.1 fedora 506 k pcre2-utf16 x86_64 10.42-1.fc38.1 fedora 214 k pcre2-utf32 x86_64 10.42-1.fc38.1 fedora 201 k pixman x86_64 0.42.2-1.fc38 fedora 285 k python-pip-wheel noarch 22.3.1-3.fc38 updates 1.4 M python-setuptools-wheel noarch 65.5.1-2.fc38 fedora 715 k python3 x86_64 3.11.8-2.fc38 updates 28 k python3-libs x86_64 3.11.8-2.fc38 updates 9.6 M sysprof-capture-devel x86_64 3.48.0-1.fc38 fedora 58 k tcl x86_64 1:8.6.12-4.fc38 fedora 1.1 M tcl-devel x86_64 1:8.6.12-4.fc38 fedora 169 k tk x86_64 1:8.6.12-4.fc38 fedora 1.6 M tk-devel x86_64 1:8.6.12-4.fc38 fedora 538 k tre x86_64 0.8.0-39.20140228gitc2f5d13.fc38 fedora 43 k tre-common noarch 0.8.0-39.20140228gitc2f5d13.fc38 fedora 31 k tre-devel x86_64 0.8.0-39.20140228gitc2f5d13.fc38 fedora 12 k ttmkfdir x86_64 3.0.9-67.fc38 fedora 54 k tzdata-java noarch 2024a-1.fc38 updates 207 k xdg-utils noarch 1.1.3-15.fc38 updates 77 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-35.fc38 fedora 505 k xorg-x11-proto-devel noarch 2022.2-3.fc38 fedora 299 k xz-devel x86_64 5.4.1-1.fc38 fedora 65 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Transaction Summary ======================================================================================== Install 170 Packages Total download size: 283 M Installed size: 878 M Downloading Packages: (1/170): R-CRAN-RANN-2.6.1-3.fc38.copr5812281.x 1.0 MB/s | 53 kB 00:00 (2/170): R-CRAN-MASS-7.3.60.0.1-1.fc38.copr6895 9.2 MB/s | 1.2 MB 00:00 (3/170): R-CRAN-Matrix-1.6.5-1.fc38.copr6886765 30 MB/s | 4.1 MB 00:00 (4/170): R-CRAN-Rcpp-1.0.12-1.fc38.copr6877523. 21 MB/s | 2.0 MB 00:00 (5/170): R-CRAN-abind-1.4.5-3.fc38.copr5812119. 6.9 MB/s | 78 kB 00:00 (6/170): R-CRAN-boot-1.3.30-1.fc38.copr7307080. 41 MB/s | 700 kB 00:00 (7/170): R-CRAN-coda-0.19.4.1-1.fc38.copr697819 27 MB/s | 361 kB 00:00 (8/170): R-CRAN-codetools-0.2.20-1.fc38.copr730 7.8 MB/s | 103 kB 00:00 (9/170): R-CRAN-doParallel-1.0.17-1.fc38.copr58 18 MB/s | 195 kB 00:00 (10/170): R-CRAN-iterators-1.0.14-1.fc38.copr58 27 MB/s | 348 kB 00:00 (11/170): R-CRAN-foreach-1.5.2-1.fc38.copr58156 9.7 MB/s | 142 kB 00:00 (12/170): R-CRAN-lattice-0.22.6-1.fc38.copr7307 54 MB/s | 1.4 MB 00:00 (13/170): R-CRAN-minqa-1.2.6-1.fc38.copr6395773 2.8 MB/s | 125 kB 00:00 (14/170): R-CRAN-lme4-1.1.35.2-1.fc38.copr73073 61 MB/s | 4.1 MB 00:00 (15/170): R-CRAN-nlme-3.1.164-1.fc38.copr670096 31 MB/s | 2.4 MB 00:00 (16/170): R-CRAN-nloptr-2.0.3-1.fc38.copr583116 14 MB/s | 700 kB 00:00 (17/170): R-rpm-macros-1.2.1-6.fc38.noarch.rpm 200 kB/s | 11 kB 00:00 (18/170): brotli-devel-1.0.9-11.fc38.x86_64.rpm 473 kB/s | 31 kB 00:00 (19/170): copy-jdk-configs-4.1-2.fc38.noarch.rp 1.1 MB/s | 28 kB 00:00 (20/170): bzip2-devel-1.0.8-13.fc38.x86_64.rpm 1.7 MB/s | 214 kB 00:00 (21/170): crypto-policies-scripts-20230301-1.gi 1.8 MB/s | 116 kB 00:00 (22/170): fonts-filesystem-2.0.5-11.fc38.noarch 304 kB/s | 8.1 kB 00:00 (23/170): desktop-file-utils-0.26-8.fc38.x86_64 2.2 MB/s | 71 kB 00:00 (24/170): brotli-1.0.9-11.fc38.x86_64.rpm 1.6 MB/s | 316 kB 00:00 (25/170): fribidi-1.0.12-3.fc38.x86_64.rpm 2.3 MB/s | 89 kB 00:00 (26/170): gc-8.2.2-3.fc38.x86_64.rpm 3.4 MB/s | 110 kB 00:00 (27/170): freetype-2.13.0-2.fc38.x86_64.rpm 2.5 MB/s | 414 kB 00:00 (28/170): gettext-envsubst-0.21.1-2.fc38.x86_64 946 kB/s | 36 kB 00:00 (29/170): freetype-devel-2.13.0-2.fc38.x86_64.r 4.6 MB/s | 945 kB 00:00 (30/170): gettext-libs-0.21.1-2.fc38.x86_64.rpm 5.3 MB/s | 320 kB 00:00 (31/170): gettext-runtime-0.21.1-2.fc38.x86_64. 1.4 MB/s | 117 kB 00:00 (32/170): graphite2-1.3.14-11.fc38.x86_64.rpm 2.8 MB/s | 95 kB 00:00 (33/170): graphite2-devel-1.3.14-11.fc38.x86_64 580 kB/s | 20 kB 00:00 (34/170): gettext-0.21.1-2.fc38.x86_64.rpm 3.8 MB/s | 1.0 MB 00:00 (35/170): harfbuzz-devel-7.1.0-1.fc38.x86_64.rp 3.3 MB/s | 445 kB 00:00 (36/170): harfbuzz-icu-7.1.0-1.fc38.x86_64.rpm 325 kB/s | 16 kB 00:00 (37/170): javapackages-filesystem-6.1.0-7.fc38. 245 kB/s | 13 kB 00:00 (38/170): jbigkit-libs-2.1-25.fc38.x86_64.rpm 994 kB/s | 53 kB 00:00 (39/170): harfbuzz-7.1.0-1.fc38.x86_64.rpm 2.3 MB/s | 889 kB 00:00 (40/170): libICE-1.0.10-10.fc38.x86_64.rpm 1.2 MB/s | 71 kB 00:00 (41/170): libSM-1.2.3-12.fc38.x86_64.rpm 746 kB/s | 41 kB 00:00 (42/170): libXau-1.0.11-2.fc38.x86_64.rpm 569 kB/s | 32 kB 00:00 (43/170): libXau-devel-1.0.11-2.fc38.x86_64.rpm 251 kB/s | 14 kB 00:00 (44/170): libXcomposite-0.4.5-9.fc38.x86_64.rpm 419 kB/s | 23 kB 00:00 (45/170): libXext-1.3.5-2.fc38.x86_64.rpm 706 kB/s | 39 kB 00:00 (46/170): libXmu-1.1.4-2.fc38.x86_64.rpm 1.4 MB/s | 77 kB 00:00 (47/170): libXrender-0.9.11-2.fc38.x86_64.rpm 472 kB/s | 27 kB 00:00 (48/170): libXrender-devel-0.9.11-2.fc38.x86_64 328 kB/s | 19 kB 00:00 (49/170): libXtst-1.2.4-2.fc38.x86_64.rpm 348 kB/s | 20 kB 00:00 (50/170): libXt-1.2.1-4.fc38.x86_64.rpm 1.5 MB/s | 179 kB 00:00 (51/170): libb2-0.98.1-8.fc38.x86_64.rpm 459 kB/s | 25 kB 00:00 (52/170): libblkid-devel-2.38.1-4.fc38.x86_64.r 373 kB/s | 16 kB 00:00 (53/170): libdatrie-0.2.13-5.fc38.x86_64.rpm 701 kB/s | 32 kB 00:00 (54/170): libffi-devel-3.4.4-2.fc38.x86_64.rpm 445 kB/s | 29 kB 00:00 (55/170): libfontenc-1.1.6-2.fc38.x86_64.rpm 502 kB/s | 32 kB 00:00 (56/170): libicu-devel-72.1-2.fc38.x86_64.rpm 3.8 MB/s | 918 kB 00:00 (57/170): libjpeg-turbo-2.1.4-2.fc38.x86_64.rpm 4.4 MB/s | 183 kB 00:00 (58/170): liblerc-4.0.0-3.fc38.x86_64.rpm 5.0 MB/s | 202 kB 00:00 (59/170): libmount-devel-2.38.1-4.fc38.x86_64.r 491 kB/s | 18 kB 00:00 (60/170): libmpc-1.3.1-2.fc38.x86_64.rpm 1.7 MB/s | 70 kB 00:00 (61/170): guile22-2.2.7-7.fc38.x86_64.rpm 5.2 MB/s | 6.5 MB 00:01 (62/170): libpng-1.6.37-14.fc38.x86_64.rpm 3.4 MB/s | 120 kB 00:00 (63/170): libselinux-devel-3.5-1.fc38.x86_64.rp 3.6 MB/s | 151 kB 00:00 (64/170): libpng-devel-1.6.37-14.fc38.x86_64.rp 3.7 MB/s | 291 kB 00:00 (65/170): libsepol-devel-3.5-1.fc38.x86_64.rpm 1.3 MB/s | 49 kB 00:00 (66/170): libthai-0.1.29-4.fc38.x86_64.rpm 5.5 MB/s | 213 kB 00:00 (67/170): libtool-ltdl-2.4.7-6.fc38.x86_64.rpm 1.0 MB/s | 37 kB 00:00 (68/170): libxcb-1.13.1-11.fc38.x86_64.rpm 6.6 MB/s | 231 kB 00:00 (69/170): lksctp-tools-1.0.19-3.fc38.x86_64.rpm 2.7 MB/s | 92 kB 00:00 (70/170): lua-5.4.4-9.fc38.x86_64.rpm 5.4 MB/s | 190 kB 00:00 (71/170): lua-posix-35.1-5.fc38.x86_64.rpm 3.7 MB/s | 138 kB 00:00 (72/170): mkfontscale-1.2.2-3.fc38.x86_64.rpm 760 kB/s | 32 kB 00:00 (73/170): mpdecimal-2.5.1-6.fc38.x86_64.rpm 2.0 MB/s | 89 kB 00:00 (74/170): libxcb-devel-1.13.1-11.fc38.x86_64.rp 5.2 MB/s | 1.4 MB 00:00 (75/170): nettle-3.8-3.fc38.x86_64.rpm 4.2 MB/s | 412 kB 00:00 (76/170): openblas-0.3.21-4.fc38.x86_64.rpm 731 kB/s | 35 kB 00:00 (77/170): libicu-72.1-2.fc38.x86_64.rpm 6.7 MB/s | 10 MB 00:01 (78/170): pango-1.50.14-1.fc38.x86_64.rpm 7.3 MB/s | 342 kB 00:00 (79/170): openblas-openmp64-0.3.21-4.fc38.x86_6 6.6 MB/s | 4.9 MB 00:00 (80/170): pcre2-utf16-10.42-1.fc38.1.x86_64.rpm 4.7 MB/s | 214 kB 00:00 (81/170): pcre2-devel-10.42-1.fc38.1.x86_64.rpm 5.7 MB/s | 506 kB 00:00 (82/170): pcre2-utf32-10.42-1.fc38.1.x86_64.rpm 5.1 MB/s | 201 kB 00:00 (83/170): pixman-0.42.2-1.fc38.x86_64.rpm 6.3 MB/s | 285 kB 00:00 (84/170): openblas-openmp-0.3.21-4.fc38.x86_64. 5.8 MB/s | 5.1 MB 00:00 (85/170): sysprof-capture-devel-3.48.0-1.fc38.x 1.4 MB/s | 58 kB 00:00 (86/170): python-setuptools-wheel-65.5.1-2.fc38 8.1 MB/s | 715 kB 00:00 (87/170): tcl-devel-8.6.12-4.fc38.x86_64.rpm 1.7 MB/s | 169 kB 00:00 (88/170): tcl-8.6.12-4.fc38.x86_64.rpm 6.6 MB/s | 1.1 MB 00:00 (89/170): tk-8.6.12-4.fc38.x86_64.rpm 9.4 MB/s | 1.6 MB 00:00 (90/170): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-2.fc38.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86_64 1/1 Preparing : 1/1 Installing : zlib-devel-1.2.13-3.fc38.x86_64 1/170 Installing : nspr-4.35.0-17.fc38.x86_64 2/170 Installing : libgfortran-13.2.1-7.fc38.x86_64 3/170 Installing : nss-util-3.99.0-1.fc38.x86_64 4/170 Installing : libquadmath-13.2.1-7.fc38.x86_64 5/170 Installing : xorg-x11-proto-devel-2022.2-3.fc38.noarch 6/170 Installing : libpng-2:1.6.37-14.fc38.x86_64 7/170 Installing : libmpc-1.3.1-2.fc38.x86_64 8/170 Installing : tcl-1:8.6.12-4.fc38.x86_64 9/170 Installing : libicu-72.1-2.fc38.x86_64 10/170 Installing : libicu-devel-72.1-2.fc38.x86_64 11/170 Installing : tcl-devel-1:8.6.12-4.fc38.x86_64 12/170 Installing : libRmath-4.3.3-1.fc38.x86_64 13/170 Installing : xz-devel-5.4.1-1.fc38.x86_64 14/170 Installing : openblas-0.3.21-4.fc38.x86_64 15/170 Installing : libjpeg-turbo-2.1.4-2.fc38.x86_64 16/170 Installing : 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libicu-72.1-2.fc38.x86_64 57/170 Verifying : libicu-devel-72.1-2.fc38.x86_64 58/170 Verifying : libjpeg-turbo-2.1.4-2.fc38.x86_64 59/170 Verifying : liblerc-4.0.0-3.fc38.x86_64 60/170 Verifying : libmount-devel-2.38.1-4.fc38.x86_64 61/170 Verifying : libmpc-1.3.1-2.fc38.x86_64 62/170 Verifying : libpng-2:1.6.37-14.fc38.x86_64 63/170 Verifying : libpng-devel-2:1.6.37-14.fc38.x86_64 64/170 Verifying : libselinux-devel-3.5-1.fc38.x86_64 65/170 Verifying : libsepol-devel-3.5-1.fc38.x86_64 66/170 Verifying : libthai-0.1.29-4.fc38.x86_64 67/170 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 68/170 Verifying : libxcb-1.13.1-11.fc38.x86_64 69/170 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 70/170 Verifying : lksctp-tools-1.0.19-3.fc38.x86_64 71/170 Verifying : lua-5.4.4-9.fc38.x86_64 72/170 Verifying : lua-posix-35.1-5.fc38.x86_64 73/170 Verifying : mkfontscale-1.2.2-3.fc38.x86_64 74/170 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 75/170 Verifying : nettle-3.8-3.fc38.x86_64 76/170 Verifying : 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xml-common-0.6.3-60.fc38.noarch 95/170 Verifying : xorg-x11-fonts-Type1-7.5-35.fc38.noarch 96/170 Verifying : xorg-x11-proto-devel-2022.2-3.fc38.noarch 97/170 Verifying : xz-devel-5.4.1-1.fc38.x86_64 98/170 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 99/170 Verifying : R-core-4.3.3-1.fc38.x86_64 100/170 Verifying : R-core-devel-4.3.3-1.fc38.x86_64 101/170 Verifying : R-devel-4.3.3-1.fc38.x86_64 102/170 Verifying : R-java-4.3.3-1.fc38.x86_64 103/170 Verifying : R-java-devel-4.3.3-1.fc38.x86_64 104/170 Verifying : R-littler-0.3.19-1.fc38.x86_64 105/170 Verifying : alsa-lib-1.2.11-2.fc38.x86_64 106/170 Verifying : annobin-docs-12.40-1.fc38.noarch 107/170 Verifying : annobin-plugin-gcc-12.40-1.fc38.x86_64 108/170 Verifying : avahi-libs-0.8-22.fc38.x86_64 109/170 Verifying : cairo-1.17.8-4.fc38.x86_64 110/170 Verifying : cmake-filesystem-3.27.7-1.fc38.x86_64 111/170 Verifying : cpp-13.2.1-7.fc38.x86_64 112/170 Verifying : cups-libs-1:2.4.7-11.fc38.x86_64 113/170 Verifying : dbus-libs-1:1.14.10-1.fc38.x86_64 114/170 Verifying : emacs-filesystem-1:29.3-1.fc38.noarch 115/170 Verifying : expat-2.6.0-1.fc38.x86_64 116/170 Verifying : flexiblas-3.4.2-1.fc38.x86_64 117/170 Verifying : flexiblas-devel-3.4.2-1.fc38.x86_64 118/170 Verifying : flexiblas-netlib-3.4.2-1.fc38.x86_64 119/170 Verifying : flexiblas-netlib64-3.4.2-1.fc38.x86_64 120/170 Verifying : flexiblas-openblas-openmp-3.4.2-1.fc38.x86_64 121/170 Verifying : flexiblas-openblas-openmp64-3.4.2-1.fc38.x86_64 122/170 Verifying : fontconfig-2.14.2-2.fc38.x86_64 123/170 Verifying : fontconfig-devel-2.14.2-2.fc38.x86_64 124/170 Verifying : gcc-13.2.1-7.fc38.x86_64 125/170 Verifying : gcc-c++-13.2.1-7.fc38.x86_64 126/170 Verifying : gcc-gfortran-13.2.1-7.fc38.x86_64 127/170 Verifying : gcc-plugin-annobin-13.2.1-7.fc38.x86_64 128/170 Verifying : glib2-2.76.6-1.fc38.x86_64 129/170 Verifying : glib2-devel-2.76.6-1.fc38.x86_64 130/170 Verifying : glibc-devel-2.37-18.fc38.x86_64 131/170 Verifying : 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149/170 Verifying : libgfortran-13.2.1-7.fc38.x86_64 150/170 Verifying : libquadmath-13.2.1-7.fc38.x86_64 151/170 Verifying : libquadmath-devel-13.2.1-7.fc38.x86_64 152/170 Verifying : libstdc++-devel-13.2.1-7.fc38.x86_64 153/170 Verifying : libtiff-4.4.0-8.fc38.x86_64 154/170 Verifying : libtirpc-devel-1.3.4-1.rc3.fc38.x86_64 155/170 Verifying : libwebp-1.3.2-2.fc38.x86_64 156/170 Verifying : libxcrypt-devel-4.4.36-1.fc38.x86_64 157/170 Verifying : libxml2-devel-2.10.4-1.fc38.x86_64 158/170 Verifying : make-1:4.4.1-1.fc38.x86_64 159/170 Verifying : nspr-4.35.0-17.fc38.x86_64 160/170 Verifying : nss-3.99.0-1.fc38.x86_64 161/170 Verifying : nss-softokn-3.99.0-1.fc38.x86_64 162/170 Verifying : nss-softokn-freebl-3.99.0-1.fc38.x86_64 163/170 Verifying : nss-sysinit-3.99.0-1.fc38.x86_64 164/170 Verifying : nss-util-3.99.0-1.fc38.x86_64 165/170 Verifying : python-pip-wheel-22.3.1-3.fc38.noarch 166/170 Verifying : python3-3.11.8-2.fc38.x86_64 167/170 Verifying : python3-libs-3.11.8-2.fc38.x86_64 168/170 Verifying : tzdata-java-2024a-1.fc38.noarch 169/170 Verifying : xdg-utils-1.1.3-15.fc38.noarch 170/170 Installed products updated. Installed: R-CRAN-MASS-7.3.60.0.1-1.fc38.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc38.copr6886765.x86_64 R-CRAN-RANN-2.6.1-3.fc38.copr5812281.x86_64 R-CRAN-Rcpp-1.0.12-1.fc38.copr6877523.x86_64 R-CRAN-abind-1.4.5-3.fc38.copr5812119.noarch R-CRAN-boot-1.3.30-1.fc38.copr7307080.noarch R-CRAN-coda-0.19.4.1-1.fc38.copr6978195.noarch R-CRAN-codetools-0.2.20-1.fc38.copr7307081.noarch R-CRAN-doParallel-1.0.17-1.fc38.copr5817836.noarch R-CRAN-foreach-1.5.2-1.fc38.copr5815655.noarch R-CRAN-iterators-1.0.14-1.fc38.copr5812211.noarch R-CRAN-lattice-0.22.6-1.fc38.copr7307082.x86_64 R-CRAN-lme4-1.1.35.2-1.fc38.copr7307303.x86_64 R-CRAN-minqa-1.2.6-1.fc38.copr6395773.x86_64 R-CRAN-nlme-3.1.164-1.fc38.copr6700968.x86_64 R-CRAN-nloptr-2.0.3-1.fc38.copr5831161.x86_64 R-core-4.3.3-1.fc38.x86_64 R-core-devel-4.3.3-1.fc38.x86_64 R-devel-4.3.3-1.fc38.x86_64 R-java-4.3.3-1.fc38.x86_64 R-java-devel-4.3.3-1.fc38.x86_64 R-littler-0.3.19-1.fc38.x86_64 R-rpm-macros-1.2.1-6.fc38.noarch alsa-lib-1.2.11-2.fc38.x86_64 annobin-docs-12.40-1.fc38.noarch annobin-plugin-gcc-12.40-1.fc38.x86_64 avahi-libs-0.8-22.fc38.x86_64 brotli-1.0.9-11.fc38.x86_64 brotli-devel-1.0.9-11.fc38.x86_64 bzip2-devel-1.0.8-13.fc38.x86_64 cairo-1.17.8-4.fc38.x86_64 cmake-filesystem-3.27.7-1.fc38.x86_64 copy-jdk-configs-4.1-2.fc38.noarch cpp-13.2.1-7.fc38.x86_64 crypto-policies-scripts-20230301-1.gita12f7b2.fc38.noarch cups-libs-1:2.4.7-11.fc38.x86_64 dbus-libs-1:1.14.10-1.fc38.x86_64 desktop-file-utils-0.26-8.fc38.x86_64 emacs-filesystem-1:29.3-1.fc38.noarch expat-2.6.0-1.fc38.x86_64 flexiblas-3.4.2-1.fc38.x86_64 flexiblas-devel-3.4.2-1.fc38.x86_64 flexiblas-netlib-3.4.2-1.fc38.x86_64 flexiblas-netlib64-3.4.2-1.fc38.x86_64 flexiblas-openblas-openmp-3.4.2-1.fc38.x86_64 flexiblas-openblas-openmp64-3.4.2-1.fc38.x86_64 fontconfig-2.14.2-2.fc38.x86_64 fontconfig-devel-2.14.2-2.fc38.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.0-2.fc38.x86_64 freetype-devel-2.13.0-2.fc38.x86_64 fribidi-1.0.12-3.fc38.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.2.1-7.fc38.x86_64 gcc-c++-13.2.1-7.fc38.x86_64 gcc-gfortran-13.2.1-7.fc38.x86_64 gcc-plugin-annobin-13.2.1-7.fc38.x86_64 gettext-0.21.1-2.fc38.x86_64 gettext-envsubst-0.21.1-2.fc38.x86_64 gettext-libs-0.21.1-2.fc38.x86_64 gettext-runtime-0.21.1-2.fc38.x86_64 glib2-2.76.6-1.fc38.x86_64 glib2-devel-2.76.6-1.fc38.x86_64 glibc-devel-2.37-18.fc38.x86_64 glibc-headers-x86-2.37-18.fc38.noarch gnutls-3.8.4-1.fc38.x86_64 google-noto-fonts-common-20230201-2.fc38.noarch google-noto-sans-vf-fonts-20230201-2.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 graphite2-devel-1.3.14-11.fc38.x86_64 guile22-2.2.7-7.fc38.x86_64 harfbuzz-7.1.0-1.fc38.x86_64 harfbuzz-devel-7.1.0-1.fc38.x86_64 harfbuzz-icu-7.1.0-1.fc38.x86_64 java-17-openjdk-1:17.0.9.0.9-3.fc38.x86_64 java-17-openjdk-devel-1:17.0.9.0.9-3.fc38.x86_64 java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86_64 javapackages-filesystem-6.1.0-7.fc38.noarch jbigkit-libs-2.1-25.fc38.x86_64 kernel-headers-6.8.3-100.fc38.x86_64 langpacks-core-font-en-3.0-32.fc38.noarch libICE-1.0.10-10.fc38.x86_64 libRmath-4.3.3-1.fc38.x86_64 libRmath-devel-4.3.3-1.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libX11-1.8.7-1.fc38.x86_64 libX11-common-1.8.7-1.fc38.noarch libX11-devel-1.8.7-1.fc38.x86_64 libX11-xcb-1.8.7-1.fc38.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXcomposite-0.4.5-9.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXft-2.3.8-2.fc38.x86_64 libXft-devel-2.3.8-2.fc38.x86_64 libXi-1.8.1-1.fc38.x86_64 libXmu-1.1.4-2.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXrender-devel-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libXtst-1.2.4-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-devel-2.38.1-4.fc38.x86_64 libdatrie-0.2.13-5.fc38.x86_64 libffi-devel-3.4.4-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.2.1-7.fc38.x86_64 libicu-72.1-2.fc38.x86_64 libicu-devel-72.1-2.fc38.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 liblerc-4.0.0-3.fc38.x86_64 libmount-devel-2.38.1-4.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libpng-devel-2:1.6.37-14.fc38.x86_64 libquadmath-13.2.1-7.fc38.x86_64 libquadmath-devel-13.2.1-7.fc38.x86_64 libselinux-devel-3.5-1.fc38.x86_64 libsepol-devel-3.5-1.fc38.x86_64 libstdc++-devel-13.2.1-7.fc38.x86_64 libthai-0.1.29-4.fc38.x86_64 libtiff-4.4.0-8.fc38.x86_64 libtirpc-devel-1.3.4-1.rc3.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libwebp-1.3.2-2.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.36-1.fc38.x86_64 libxml2-devel-2.10.4-1.fc38.x86_64 lksctp-tools-1.0.19-3.fc38.x86_64 lua-5.4.4-9.fc38.x86_64 lua-posix-35.1-5.fc38.x86_64 make-1:4.4.1-1.fc38.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 nettle-3.8-3.fc38.x86_64 nspr-4.35.0-17.fc38.x86_64 nss-3.99.0-1.fc38.x86_64 nss-softokn-3.99.0-1.fc38.x86_64 nss-softokn-freebl-3.99.0-1.fc38.x86_64 nss-sysinit-3.99.0-1.fc38.x86_64 nss-util-3.99.0-1.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openblas-openmp64-0.3.21-4.fc38.x86_64 pango-1.50.14-1.fc38.x86_64 pcre2-devel-10.42-1.fc38.1.x86_64 pcre2-utf16-10.42-1.fc38.1.x86_64 pcre2-utf32-10.42-1.fc38.1.x86_64 pixman-0.42.2-1.fc38.x86_64 python-pip-wheel-22.3.1-3.fc38.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.8-2.fc38.x86_64 python3-libs-3.11.8-2.fc38.x86_64 sysprof-capture-devel-3.48.0-1.fc38.x86_64 tcl-1:8.6.12-4.fc38.x86_64 tcl-devel-1:8.6.12-4.fc38.x86_64 tk-1:8.6.12-4.fc38.x86_64 tk-devel-1:8.6.12-4.fc38.x86_64 tre-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 tre-common-0.8.0-39.20140228gitc2f5d13.fc38.noarch tre-devel-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 ttmkfdir-3.0.9-67.fc38.x86_64 tzdata-java-2024a-1.fc38.noarch xdg-utils-1.1.3-15.fc38.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-Type1-7.5-35.fc38.noarch xorg-x11-proto-devel-2022.2-3.fc38.noarch xz-devel-5.4.1-1.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm Start: rpmbuild R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wj1kow + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf spAbundance + /usr/bin/mkdir -p spAbundance + cd spAbundance + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/spAbundance_0.1.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d spAbundance/src ']' + find spAbundance/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d spAbundance/src ']' + find spAbundance/src/Makevars -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Ut9hyf + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd spAbundance + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.PRJbQl + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd spAbundance + mkdir -p /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/usr/local/lib/R/library spAbundance * installing *source* package 'spAbundance' ... ** package 'spAbundance' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)' g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c DS.cpp -o DS.o DS.cpp: In function 'DS': DS.cpp:773:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 773 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ DS.cpp:203:10: note: 'sigmaSqPSamples_r' was declared here 203 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ DS.cpp:775:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 775 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ DS.cpp:204:10: note: 'alphaStarSamples_r' was declared here 204 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ DS.cpp:767:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 767 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ DS.cpp:212:10: note: 'sigmaSqMuSamples_r' was declared here 212 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ DS.cpp:769:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 769 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ DS.cpp:213:10: note: 'betaStarSamples_r' was declared here 213 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ DS.cpp:867:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 867 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ DS.cpp:235:12: note: 'tmp_0' was declared here 235 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c NMix.cpp -o NMix.o NMix.cpp: In function 'NMix': NMix.cpp:615:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 615 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ NMix.cpp:200:10: note: 'sigmaSqPSamples_r' was declared here 200 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ NMix.cpp:617:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 617 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ NMix.cpp:201:10: note: 'alphaStarSamples_r' was declared here 201 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ NMix.cpp:609:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 609 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ NMix.cpp:209:10: note: 'sigmaSqMuSamples_r' was declared here 209 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ NMix.cpp:611:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 611 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ NMix.cpp:210:10: note: 'betaStarSamples_r' was declared here 210 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ NMix.cpp:707:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 707 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ NMix.cpp:221:12: note: 'tmp_0' was declared here 221 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c abund.cpp -o abund.o abund.cpp: In function 'abund': abund.cpp:410:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 410 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ abund.cpp:168:10: note: 'sigmaSqMuSamples_r' was declared here 168 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ abund.cpp:412:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 412 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ abund.cpp:169:10: note: 'betaStarSamples_r' was declared here 169 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c abundGaussian.cpp -o abundGaussian.o abundGaussian.cpp: In function 'abundGaussian': abundGaussian.cpp:370:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 370 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ abundGaussian.cpp:163:10: note: 'sigmaSqMuSamples_r' was declared here 163 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ abundGaussian.cpp:372:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 372 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ abundGaussian.cpp:164:10: note: 'betaStarSamples_r' was declared here 164 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c checkAlphaDS.cpp -o checkAlphaDS.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c idist.cpp -o idist.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.cpp -o init.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lfMsAbund.cpp -o lfMsAbund.o lfMsAbund.cpp: In function 'lfMsAbund': lfMsAbund.cpp:720:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 720 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:219:10: note: 'sigmaSqMuSamples_r' was declared here 219 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:721:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 721 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:220:10: note: 'betaStarSamples_r' was declared here 220 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsAbund.cpp:806:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 806 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:228:10: note: 'kappaSamples_r' was declared here 228 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o lfMsAbundGaussian.cpp: In function 'lfMsAbundGaussian': lfMsAbundGaussian.cpp:679:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 679 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsAbundGaussian.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here 243 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsAbundGaussian.cpp:680:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 680 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsAbundGaussian.cpp:244:10: note: 'betaStarSamples_r' was declared here 244 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lfMsDS.cpp -o lfMsDS.o lfMsDS.cpp: In function 'lfMsDS': lfMsDS.cpp:1152:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1152 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:277:10: note: 'sigmaSqPSamples_r' was declared here 277 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsDS.cpp:1153:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1153 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:278:10: note: 'alphaStarSamples_r' was declared here 278 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsDS.cpp:1156:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1156 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:286:10: note: 'sigmaSqMuSamples_r' was declared here 286 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsDS.cpp:1157:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1157 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:287:10: note: 'betaStarSamples_r' was declared here 287 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsDS.cpp:1259:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1259 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:294:10: note: 'kappaSamples_r' was declared here 294 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ lfMsDS.cpp:1255:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1255 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ lfMsDS.cpp:185:12: note: 'tmp_0' was declared here 185 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lfMsNMix.cpp -o lfMsNMix.o lfMsNMix.cpp: In function 'lfMsNMix': lfMsNMix.cpp:1013:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1013 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:270:10: note: 'sigmaSqPSamples_r' was declared here 270 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1014:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1014 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:271:10: note: 'alphaStarSamples_r' was declared here 271 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1017:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1017 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:279:10: note: 'sigmaSqMuSamples_r' was declared here 279 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1018:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1018 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:280:10: note: 'betaStarSamples_r' was declared here 280 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1115:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1115 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:287:10: note: 'kappaSamples_r' was declared here 287 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ lfMsNMix.cpp:1111:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1111 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ lfMsNMix.cpp:178:12: note: 'tmp_0' was declared here 178 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mkSpCov.cpp -o mkSpCov.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c msAbund.cpp -o msAbund.o msAbund.cpp: In function 'msAbund': msAbund.cpp:526:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 526 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msAbund.cpp:199:10: note: 'sigmaSqMuSamples_r' was declared here 199 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msAbund.cpp:527:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 527 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msAbund.cpp:200:10: note: 'betaStarSamples_r' was declared here 200 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msAbund.cpp:610:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 610 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msAbund.cpp:208:10: note: 'kappaSamples_r' was declared here 208 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c msAbundGaussian.cpp -o msAbundGaussian.o msAbundGaussian.cpp: In function 'msAbundGaussian': msAbundGaussian.cpp:499:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 499 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msAbundGaussian.cpp:217:10: note: 'sigmaSqMuSamples_r' was declared here 217 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msAbundGaussian.cpp:500:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 500 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msAbundGaussian.cpp:218:10: note: 'betaStarSamples_r' was declared here 218 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c msDS.cpp -o msDS.o msDS.cpp: In function 'msDS': msDS.cpp:966:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 966 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msDS.cpp:258:10: note: 'sigmaSqPSamples_r' was declared here 258 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ msDS.cpp:967:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 967 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msDS.cpp:259:10: note: 'alphaStarSamples_r' was declared here 259 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msDS.cpp:970:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 970 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msDS.cpp:267:10: note: 'sigmaSqMuSamples_r' was declared here 267 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msDS.cpp:971:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 971 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msDS.cpp:268:10: note: 'betaStarSamples_r' was declared here 268 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msDS.cpp:1071:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1071 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msDS.cpp:275:10: note: 'kappaSamples_r' was declared here 275 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ msDS.cpp:1067:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1067 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ msDS.cpp:179:12: note: 'tmp_0' was declared here 179 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c msNMix.cpp -o msNMix.o msNMix.cpp: In function 'msNMix': msNMix.cpp:829:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 829 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msNMix.cpp:250:10: note: 'sigmaSqPSamples_r' was declared here 250 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ msNMix.cpp:830:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 830 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msNMix.cpp:251:10: note: 'alphaStarSamples_r' was declared here 251 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msNMix.cpp:833:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 833 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msNMix.cpp:259:10: note: 'sigmaSqMuSamples_r' was declared here 259 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msNMix.cpp:834:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 834 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msNMix.cpp:260:10: note: 'betaStarSamples_r' was declared here 260 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msNMix.cpp:929:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 929 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msNMix.cpp:267:10: note: 'kappaSamples_r' was declared here 267 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ msNMix.cpp:925:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 925 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ msNMix.cpp:171:12: note: 'tmp_0' was declared here 171 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nn.cpp -o nn.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpg.cpp -o rpg.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o sfMsAbundGaussianNNGP.cpp: In function 'sfMsAbundGaussianNNGP': sfMsAbundGaussianNNGP.cpp:942:53: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 942 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:300:10: note: 'yRepSamples_r' was declared here 300 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:941:51: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 941 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:301:10: note: 'muSamples_r' was declared here 301 | SEXP muSamples_r; | ^~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:943:53: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 943 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:302:10: note: 'likeSamples_r' was declared here 302 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:948:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 948 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:319:10: note: 'sigmaSqMuSamples_r' was declared here 319 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:949:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 949 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:320:10: note: 'betaStarSamples_r' was declared here 320 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o sfMsAbundNNGP.cpp: In function 'sfMsAbundNNGP': sfMsAbundNNGP.cpp:995:58: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 995 | F77_NAME(dcopy)(&nObsnSp, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObsnSp], &inc); | ~~~~^~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:268:10: note: 'yRepSamples_r' was declared here 268 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ sfMsAbundNNGP.cpp:996:56: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 996 | F77_NAME(dcopy)(&nObsnSp, mu, &inc, &REAL(muSamples_r)[sPost*nObsnSp], &inc); | ~~~~^~~~~~~~~~~~~ sfMsAbundNNGP.cpp:269:10: note: 'muSamples_r' was declared here 269 | SEXP muSamples_r; | ^~~~~~~~~~~ sfMsAbundNNGP.cpp:997:58: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 997 | F77_NAME(dcopy)(&nObsnSp, like, &inc, &REAL(likeSamples_r)[sPost*nObsnSp], &inc); | ~~~~^~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:270:10: note: 'likeSamples_r' was declared here 270 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfMsAbundNNGP.cpp:1004:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1004 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:287:10: note: 'sigmaSqMuSamples_r' was declared here 287 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:1005:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1005 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:288:10: note: 'betaStarSamples_r' was declared here 288 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:1097:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1097 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:296:10: note: 'kappaSamples_r' was declared here 296 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o sfMsDSNNGP.cpp: In function 'sfMsDSNNGP': sfMsDSNNGP.cpp:1428:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1428 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:341:10: note: 'sigmaSqPSamples_r' was declared here 341 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1429:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1429 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:342:10: note: 'alphaStarSamples_r' was declared here 342 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1432:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1432 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:350:10: note: 'sigmaSqMuSamples_r' was declared here 350 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1433:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1433 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:351:10: note: 'betaStarSamples_r' was declared here 351 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1542:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1542 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:358:10: note: 'kappaSamples_r' was declared here 358 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1538:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1538 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ sfMsDSNNGP.cpp:243:12: note: 'tmp_0' was declared here 243 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o sfMsNMixNNGP.cpp: In function 'sfMsNMixNNGP': sfMsNMixNNGP.cpp:1289:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1289 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:335:10: note: 'sigmaSqPSamples_r' was declared here 335 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1290:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1290 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:336:10: note: 'alphaStarSamples_r' was declared here 336 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1293:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1293 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:344:10: note: 'sigmaSqMuSamples_r' was declared here 344 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1294:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1294 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:345:10: note: 'betaStarSamples_r' was declared here 345 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1398:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1398 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:352:10: note: 'kappaSamples_r' was declared here 352 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1394:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1394 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ sfMsNMixNNGP.cpp:237:12: note: 'tmp_0' was declared here 237 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o spAbundGaussianNNGP.cpp: In function 'spAbundGaussianNNGP': spAbundGaussianNNGP.cpp:662:52: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 662 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:229:10: note: 'yRepSamples_r' was declared here 229 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:663:60: warning: 'yRepZeroSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 663 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:230:10: note: 'yRepZeroSamples_r' was declared here 230 | SEXP yRepZeroSamples_r; | ^~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:664:50: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 664 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc); | ~~~~^~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:231:10: note: 'muSamples_r' was declared here 231 | SEXP muSamples_r; | ^~~~~~~~~~~ spAbundGaussianNNGP.cpp:666:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 666 | &REAL(likeSamples_r)[sPost*J], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:232:10: note: 'likeSamples_r' was declared here 232 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:670:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 670 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:247:10: note: 'sigmaSqMuSamples_r' was declared here 247 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:672:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 672 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:248:10: note: 'betaStarSamples_r' was declared here 248 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spAbundNNGP.cpp -o spAbundNNGP.o spAbundNNGP.cpp: In function 'spAbundNNGP': spAbundNNGP.cpp:759:55: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 759 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundNNGP.cpp:222:10: note: 'yRepSamples_r' was declared here 222 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ spAbundNNGP.cpp:758:53: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 758 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~ spAbundNNGP.cpp:223:10: note: 'muSamples_r' was declared here 223 | SEXP muSamples_r; | ^~~~~~~~~~~ spAbundNNGP.cpp:761:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 761 | &REAL(likeSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundNNGP.cpp:224:10: note: 'likeSamples_r' was declared here 224 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ spAbundNNGP.cpp:860:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 860 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:236:10: note: 'kappaSamples_r' was declared here 236 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ spAbundNNGP.cpp:770:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 770 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:242:10: note: 'sigmaSqMuSamples_r' was declared here 242 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:772:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 772 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:243:10: note: 'betaStarSamples_r' was declared here 243 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spAbundNNGPPredict.cpp -o spAbundNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spDSNNGP.cpp -o spDSNNGP.o spDSNNGP.cpp: In function 'spDSNNGP': spDSNNGP.cpp:1234:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1234 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:260:10: note: 'kappaSamples_r' was declared here 260 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ spDSNNGP.cpp:1127:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1127 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:272:10: note: 'sigmaSqPSamples_r' was declared here 272 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1129:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1129 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:273:10: note: 'alphaStarSamples_r' was declared here 273 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1121:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1121 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:281:10: note: 'sigmaSqMuSamples_r' was declared here 281 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1123:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1123 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:282:10: note: 'betaStarSamples_r' was declared here 282 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1230:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1230 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ spDSNNGP.cpp:304:12: note: 'tmp_0' was declared here 304 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spNMixNNGP.cpp -o spNMixNNGP.o spNMixNNGP.cpp: In function 'spNMixNNGP': spNMixNNGP.cpp:1075:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1075 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:258:10: note: 'kappaSamples_r' was declared here 258 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ spNMixNNGP.cpp:975:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 975 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:270:10: note: 'sigmaSqPSamples_r' was declared here 270 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:977:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 977 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:271:10: note: 'alphaStarSamples_r' was declared here 271 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:969:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 969 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:279:10: note: 'sigmaSqMuSamples_r' was declared here 279 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:971:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 971 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:280:10: note: 'betaStarSamples_r' was declared here 280 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:1071:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1071 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ spNMixNNGP.cpp:291:12: note: 'tmp_0' was declared here 291 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcAbundNNGP.cpp -o svcAbundNNGP.o svcAbundNNGP.cpp: In function 'svcAbundNNGP': svcAbundNNGP.cpp:713:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 713 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here 243 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:715:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 715 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:244:10: note: 'betaStarSamples_r' was declared here 244 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:582:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcAbundNNGP.cpp:330:12: note: 'logDet' was declared here 330 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGP.cpp: In function 'svcMsAbundGaussianNNGP': svcMsAbundGaussianNNGP.cpp:1030:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1030 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcMsAbundGaussianNNGP.cpp:320:10: note: 'sigmaSqMuSamples_r' was declared here 320 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ svcMsAbundGaussianNNGP.cpp:1031:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1031 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsAbundGaussianNNGP.cpp:321:10: note: 'betaStarSamples_r' was declared here 321 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c util.cpp -o util.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c waicAbund.cpp -o waicAbund.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o spAbundance.so DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spAbundNNGPPredict.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/usr/local/lib/R/library/00LOCK-spAbundance/00new/spAbundance/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spAbundance' finding HTML links ... done DS html NMix html abund html bbsData.rda html bbsPredData.rda html dataNMixSim.rda html fitted.DS html fitted.NMix html fitted.abund html fitted.lfMsAbund html fitted.lfMsDS html fitted.lfMsNMix html fitted.msAbund html fitted.msDS html fitted.msNMix html fitted.sfMsAbund html fitted.sfMsDS html fitted.sfMsNMix html fitted.spAbund html fitted.spDS html fitted.spNMix html fitted.svcAbund html fitted.svcMsAbund html hbefCount2015.rda html lfMsAbund html lfMsDS html lfMsNMix html msAbund html msDS html msNMix html neonDWP.rda html neonPredData.rda html ppcAbund html predict.DS html predict.NMix html predict.abund html predict.lfMsAbund html predict.lfMsDS html predict.lfMsNMix html predict.msAbund html predict.msDS html predict.msNMix html predict.sfMsAbund html predict.sfMsDS html predict.sfMsNMix html predict.spAbund html predict.spDS html predict.spNMix html predict.svcAbund html predict.svcMsAbund html sfMsAbund html sfMsDS html sfMsNMix html simAbund html simDS html simMsAbund html simMsDS html simMsNMix html simNMix html spAbund html spDS html spNMix html summary.DS html summary.NMix html summary.abund html summary.lfMsAbund html summary.lfMsDS html summary.lfMsNMix html summary.msAbund html summary.msDS html summary.msNMix html summary.sfMsAbund html summary.sfMsDS html summary.sfMsNMix html summary.spAbund html summary.spDS html summary.spNMix html summary.svcAbund html summary.svcMsAbund html svcAbund html svcMsAbund html waicAbund html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spAbundance) + test -d spAbundance/src + cd spAbundance/src + rm -f DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spAbundNNGPPredict.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o spAbundance.so + rm -f /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.3-1.fc38.copr7308087 --unique-debug-suffix -0.1.3-1.fc38.copr7308087.x86_64 --unique-debug-src-base R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/spAbundance find-debuginfo: starting Extracting debug info from 1 files /usr/bin/gdb.minimal DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 2094 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/DS.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/NMix.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/abund.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/checkAlphaDS.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/checkMSAlphaDS.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/idist.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/lfMsDS.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/msDS.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/sfMsDSNNGP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/spAbundNNGP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/spDSNNGP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64/spAbundance/src/spNMixNNGP.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 Provides: R-CRAN-spAbundance = 0.1.3-1.fc38.copr7308087 R-CRAN-spAbundance(x86-64) = 0.1.3-1.fc38.copr7308087 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-spAbundance-debugsource-0.1.3-1.fc38.copr7308087.x86_64 Provides: R-CRAN-spAbundance-debugsource = 0.1.3-1.fc38.copr7308087 R-CRAN-spAbundance-debugsource(x86-64) = 0.1.3-1.fc38.copr7308087 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-spAbundance-debuginfo-0.1.3-1.fc38.copr7308087.x86_64 Provides: R-CRAN-spAbundance-debuginfo = 0.1.3-1.fc38.copr7308087 R-CRAN-spAbundance-debuginfo(x86-64) = 0.1.3-1.fc38.copr7308087 debuginfo(build-id) = fb1f3cb881d2a6954ddfc125c6efd1d104cc24f3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-spAbundance-debugsource(x86-64) = 0.1.3-1.fc38.copr7308087 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-spAbundance-debuginfo-0.1.3-1.fc38.copr7308087.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-spAbundance-debugsource-0.1.3-1.fc38.copr7308087.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Ib2hr7 + umask 022 + cd /builddir/build/BUILD + cd spAbundance + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.JbcR5I + umask 022 + cd /builddir/build/BUILD + rm -rf spAbundance spAbundance.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm Finish: build phase for R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1713089197.581341/root/var/log/dnf.log /var/lib/mock/fedora-38-x86_64-1713089197.581341/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1713089197.581341/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-spAbundance-0.1.3-1.fc38.copr7308087.src.rpm) Config(child) 1 minutes 53 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-spAbundance-debugsource", "epoch": null, "version": "0.1.3", "release": "1.fc38.copr7308087", "arch": "x86_64" }, { "name": "R-CRAN-spAbundance", "epoch": null, "version": "0.1.3", "release": "1.fc38.copr7308087", "arch": "x86_64" }, { "name": "R-CRAN-spAbundance-debuginfo", "epoch": null, "version": "0.1.3", "release": "1.fc38.copr7308087", "arch": "x86_64" }, { "name": "R-CRAN-spAbundance", "epoch": null, "version": "0.1.3", "release": "1.fc38.copr7308087", "arch": "src" } ] } RPMResults finished