%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  JSDNE
%global packver   4.3.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          4.3.2
Release:          1%{?dist}%{?buildtag}
Summary:          Estimating the Age using Auricular Surface by DNE

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-molaR 
BuildRequires:    R-CRAN-nnet 
BuildRequires:    R-CRAN-Rvcg 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-molaR 
Requires:         R-CRAN-nnet 
Requires:         R-CRAN-Rvcg 

%description
The age is estimated by calculating the Dirichlet Normal Energy (DNE) on
the whole auricular surface and the apex of the auricular surface. It
involves three estimation methods: principal component discriminant
analysis (PCQDA), principal component regression analysis (PCR), and
principal component logistic regression analysis (PCLR) methods. The
package is created with the data from the Louis Lopes Collection in
Lisbon, the 21st Century Identified Human Remains Collection in Coimbra,
and the CAL Milano Cemetery Skeletal Collection in Milan.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}