%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  CausalQueries
%global packver   1.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Make, Update, and Query Binary Causal Models

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4.0
Requires:         R-core >= 3.4.0
BuildRequires:    R-stats >= 4.1.1
BuildRequires:    R-CRAN-ggplot2 >= 3.3.5
BuildRequires:    R-CRAN-rstan >= 2.26.0
BuildRequires:    R-CRAN-StanHeaders >= 2.26.0
BuildRequires:    R-CRAN-rstantools >= 2.0.0
BuildRequires:    R-CRAN-BH >= 1.66.0
BuildRequires:    R-CRAN-knitr >= 1.45
BuildRequires:    R-CRAN-stringr >= 1.4.0
BuildRequires:    R-CRAN-lifecycle >= 1.0.1
BuildRequires:    R-CRAN-latex2exp >= 0.9.4
BuildRequires:    R-CRAN-RcppEigen >= 0.3.3.3.0
BuildRequires:    R-CRAN-dagitty >= 0.3.1
BuildRequires:    R-CRAN-ggdag >= 0.2.4
BuildRequires:    R-CRAN-rlang >= 0.2.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.0
BuildRequires:    R-CRAN-dirmult >= 0.1.3.4
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-RcppArmadillo 
BuildRequires:    R-CRAN-rstantools
Requires:         R-stats >= 4.1.1
Requires:         R-CRAN-ggplot2 >= 3.3.5
Requires:         R-CRAN-rstan >= 2.26.0
Requires:         R-CRAN-rstantools >= 2.0.0
Requires:         R-CRAN-knitr >= 1.45
Requires:         R-CRAN-stringr >= 1.4.0
Requires:         R-CRAN-lifecycle >= 1.0.1
Requires:         R-CRAN-latex2exp >= 0.9.4
Requires:         R-CRAN-dagitty >= 0.3.1
Requires:         R-CRAN-ggdag >= 0.2.4
Requires:         R-CRAN-rlang >= 0.2.0
Requires:         R-CRAN-Rcpp >= 0.12.0
Requires:         R-CRAN-dirmult >= 0.1.3.4
Requires:         R-CRAN-dplyr 
Requires:         R-methods 
Requires:         R-CRAN-rstantools

%description
Users can declare binary causal models, update beliefs about causal types
given data and calculate arbitrary estimands.  Model definition makes use
of 'dagitty' functionality. Updating is implemented in 'stan'. The
approach used in 'CausalQueries' is a generalization of the 'biqq' models
described in "Mixing Methods: A Bayesian Approach" (Humphreys and Jacobs,
2015, <DOI:10.1017/S0003055415000453>). The conceptual extension makes use
of work on probabilistic causal models described in Pearl's Causality
(Pearl, 2009, <DOI:10.1017/CBO9780511803161>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}