Warning: Permanently added '3.80.173.137' (ED25519) to the list of known hosts. Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-0x9lsl6b/R-CRAN-secsse/R-CRAN-secsse.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0x9lsl6b/R-CRAN-secsse --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714527263.837411 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-0x9lsl6b/R-CRAN-secsse/R-CRAN-secsse.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0x9lsl6b/R-CRAN-secsse --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714527263.837411 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-0x9lsl6b/R-CRAN-secsse/R-CRAN-secsse.spec) Config(fedora-38-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1714527263.837411/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 69 kB/s | 1.5 kB 00:00 Copr repository 158 MB/s | 26 MB 00:00 fedora 71 kB/s | 23 kB 00:00 updates 66 kB/s | 22 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc38 updates 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.1-12.fc38 updates 1.1 M cpio x86_64 2.13-14.fc38 fedora 276 k diffutils x86_64 3.10-1.fc38 updates 398 k fedora-release-common noarch 38-36 updates 22 k findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M glibc-minimal-langpack x86_64 2.37-19.fc38 updates 42 k grep x86_64 3.8-3.fc38 fedora 293 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.2-2.fc38 fedora 181 k patch x86_64 2.7.6-19.fc38 fedora 126 k redhat-rpm-config noarch 257-1.fc38 updates 76 k rpm-build x86_64 4.18.2-1.fc38 updates 76 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-6.fc38 fedora 1.3 M tar x86_64 2:1.34-8.fc38 fedora 889 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.38.1-4.fc38 fedora 2.3 M which x86_64 2.21-39.fc38 fedora 42 k xz x86_64 5.4.1-1.fc38 fedora 419 k Installing dependencies: alternatives x86_64 1.26-1.fc38 updates 39 k ansible-srpm-macros noarch 1-12.fc38 updates 21 k audit-libs x86_64 3.1.2-8.fc38 updates 117 k authselect x86_64 1.4.3-1.fc38 updates 149 k authselect-libs x86_64 1.4.3-1.fc38 updates 249 k basesystem noarch 11-15.fc38 fedora 7.0 k binutils x86_64 2.39-16.fc38 updates 5.4 M binutils-gold x86_64 2.39-16.fc38 updates 795 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-1.0.fc38 updates 837 k coreutils-common x86_64 9.1-12.fc38 updates 2.0 M cracklib x86_64 2.9.11-1.fc38 updates 93 k crypto-policies noarch 20230301-1.gita12f7b2.fc38 fedora 93 k curl x86_64 8.0.1-7.fc38 updates 348 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k debugedit x86_64 5.0-9.fc38 updates 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-7.fc38 fedora 22 k elfutils x86_64 0.191-1.fc38 updates 557 k elfutils-debuginfod-client x86_64 0.191-1.fc38 updates 37 k elfutils-default-yama-scope noarch 0.191-1.fc38 updates 12 k elfutils-libelf x86_64 0.191-1.fc38 updates 208 k elfutils-libs x86_64 0.191-1.fc38 updates 263 k fedora-gpg-keys noarch 38-1 fedora 126 k fedora-release noarch 38-36 updates 12 k fedora-release-identity-basic noarch 38-36 updates 13 k fedora-repos noarch 38-1 fedora 9.1 k file x86_64 5.44-3.fc38 fedora 49 k file-libs x86_64 5.44-3.fc38 fedora 730 k filesystem x86_64 3.18-3.fc38 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k forge-srpm-macros noarch 0.3.1-1.fc38 updates 19 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 14.1-3.fc38 updates 4.3 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37-19.fc38 updates 2.1 M glibc-common x86_64 2.37-19.fc38 updates 320 k glibc-gconv-extra x86_64 2.37-19.fc38 updates 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc38 updates 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-19.fc38 updates 10 k keyutils-libs x86_64 1.6.3-1.fc38 updates 31 k krb5-libs x86_64 1.21-3.fc38 updates 764 k libacl x86_64 2.3.1-7.fc38 updates 23 k libarchive x86_64 3.6.1-4.fc38 fedora 400 k libattr x86_64 2.5.1-6.fc38 fedora 18 k libblkid x86_64 2.38.1-4.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-8.fc38 updates 68 k libcap-ng x86_64 0.8.3-8.fc38 updates 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcurl x86_64 8.0.1-7.fc38 updates 315 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.5.2-2.fc38 updates 30 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.38.1-4.fc38 fedora 161 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.2.1-7.fc38 updates 115 k libgomp x86_64 13.2.1-7.fc38 updates 324 k libidn2 x86_64 2.3.7-1.fc38 updates 119 k libmount x86_64 2.38.1-4.fc38 fedora 135 k libnghttp2 x86_64 1.52.0-3.fc38 updates 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.8.0-6.fc38 fedora 35 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc38 fedora 87 k libsemanage x86_64 3.5-2.fc38 fedora 120 k libsepol x86_64 3.5-1.fc38 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.38.1-4.fc38 fedora 64 k libssh x86_64 0.10.6-2.fc38 updates 212 k libssh-config noarch 0.10.6-2.fc38 updates 9.0 k libstdc++ x86_64 13.2.1-7.fc38 updates 870 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.4-1.rc3.fc38 updates 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-8.fc38 fedora 26 k libuuid x86_64 2.38.1-4.fc38 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.36-1.fc38 updates 119 k libxml2 x86_64 2.10.4-1.fc38 updates 701 k libzstd x86_64 1.5.6-1.fc38 updates 312 k lua-libs x86_64 5.4.4-9.fc38 fedora 133 k lua-srpm-macros noarch 1-13.fc38 updates 8.7 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-7.20230520.fc38.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc38.1 updates 336 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.6-1.fc38 updates 254 k openssl-libs x86_64 1:3.0.9-2.fc38 updates 2.1 M p11-kit x86_64 0.25.3-1.fc38 updates 521 k p11-kit-trust x86_64 0.25.3-1.fc38 updates 142 k package-notes-srpm-macros noarch 0.5-8.fc38 updates 11 k pam x86_64 1.5.2-16.fc38 fedora 560 k pam-libs x86_64 1.5.2-16.fc38 fedora 58 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.8.0-6.fc38 fedora 41 k pkgconf-m4 noarch 1.8.0-6.fc38 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-6.fc38 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20240107-1.fc38 updates 58 k pyproject-srpm-macros noarch 1.12.0-1.fc38 updates 14 k python-srpm-macros noarch 3.11-10.fc38 fedora 26 k qt5-srpm-macros noarch 5.15.12-1.fc38 updates 8.3 k qt6-srpm-macros noarch 6.6.0-1.fc38 updates 8.6 k readline x86_64 8.2-4.fc38 updates 212 k rpm x86_64 4.18.2-1.fc38 updates 567 k rpm-build-libs x86_64 4.18.2-1.fc38 updates 93 k rpm-libs x86_64 4.18.2-1.fc38 updates 310 k rpm-sequoia x86_64 1.6.0-1.fc38 updates 872 k rpmautospec-rpm-macros noarch 0.6.3-1.fc38 updates 10 k rust-srpm-macros noarch 26.2-1.fc38 updates 13 k setup noarch 2.14.3-2.fc38 fedora 152 k sqlite-libs x86_64 3.40.1-2.fc38 fedora 666 k systemd-libs x86_64 253.17-1.fc38 updates 649 k tzdata noarch 2024a-1.fc38 updates 715 k util-linux-core x86_64 2.38.1-4.fc38 fedora 473 k xxhash-libs x86_64 0.8.2-1.fc38 updates 37 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zip x86_64 3.0-37.fc38 updates 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.6-1.fc38 updates 478 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total size: 54 M Installed size: 187 M Downloading Packages: [SKIPPED] basesystem-11-15.fc38.noarch.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-14.fc38.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20230301-1.gita12f7b2.fc38.noarch.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-7.fc38.noarch.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-1.noarch.rpm: Already downloaded [SKIPPED] file-5.44-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.44-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-7.fc38.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] gmp-6.2.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-2.fc38.noarch.rpm: Already downloaded [SKIPPED] grep-3.8-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] info-7.0.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-55.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libunistring1.0-1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-3.fc38.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-13.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-16.fc38.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-16.fc38.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-19.fc38.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.42-1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.42-1.fc38.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-48.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-10.fc38.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.3-2.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.40.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] unzip-6.0-60.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-39.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.26-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-12.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] bash-5.2.26-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.39-16.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-16.fc38.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.1-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] curl-8.0.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.10-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-0.191-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.191-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.191-1.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.191-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.191-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] fedora-release-38-36.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-36.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-36.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] gdb-minimal-14.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-2.37-19.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.37-19.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.37-19.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.37-19.fc38.x86_64.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.5.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-19.fc38.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.21-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcurl-8.0.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.5.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgcc-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgomp-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.7-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.52.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.6-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.6-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libstdc++-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.4-1.rc3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.36-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.6-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-13.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-base-6.4-7.20230520.fc38.1.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.4-7.20230520.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] openldap-2.6.6-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.9-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.25.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.25.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-8.fc38.noarch.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20240107-1.fc38.noarch.rpm: Already downloaded [SKIPPED] pyproject-srpm-macros-1.12.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.12-1.fc38.noarch.rpm: Already downloaded [SKIPPED] qt6-srpm-macros-6.6.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-257-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.6.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.6.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-26.2-1.fc38.noarch.rpm: Already downloaded [SKIPPED] systemd-libs-253.17-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2024a-1.fc38.noarch.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-37.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.6-1.fc38.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-3.fc38.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-7.fc38.x86_64 1/154 Running scriptlet: libgcc-13.2.1-7.fc38.x86_64 1/154 Installing : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 2/154 Running scriptlet: crypto-policies-20230301-1.gita12f7b2.fc38.noarc 2/154 Installing : tzdata-2024a-1.fc38.noarch 3/154 Installing : fedora-release-identity-basic-38-36.noarch 4/154 Installing : rust-srpm-macros-26.2-1.fc38.noarch 5/154 Installing : qt6-srpm-macros-6.6.0-1.fc38.noarch 6/154 Installing : qt5-srpm-macros-5.15.12-1.fc38.noarch 7/154 Installing : publicsuffix-list-dafsa-20240107-1.fc38.noarch 8/154 Installing : package-notes-srpm-macros-0.5-8.fc38.noarch 9/154 Installing : ncurses-base-6.4-7.20230520.fc38.1.noarch 10/154 Installing : libssh-config-0.10.6-2.fc38.noarch 11/154 Installing : kernel-srpm-macros-1.0-19.fc38.noarch 12/154 Installing : coreutils-common-9.1-12.fc38.x86_64 13/154 Installing : ansible-srpm-macros-1-12.fc38.noarch 14/154 Installing : pkgconf-m4-1.8.0-6.fc38.noarch 15/154 Installing : perl-srpm-macros-1-48.fc38.noarch 16/154 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 17/154 Installing : openblas-srpm-macros-2-13.fc38.noarch 18/154 Installing : ocaml-srpm-macros-7-3.fc38.noarch 19/154 Installing : gnat-srpm-macros-6-2.fc38.noarch 20/154 Installing : ghc-srpm-macros-1.6.1-1.fc38.noarch 21/154 Installing : fpc-srpm-macros-1.3-7.fc38.noarch 22/154 Installing : fedora-gpg-keys-38-1.noarch 23/154 Installing : fedora-release-38-36.noarch 24/154 Installing : fedora-repos-38-1.noarch 25/154 Installing : fedora-release-common-38-36.noarch 26/154 Installing : setup-2.14.3-2.fc38.noarch 27/154 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-2.fc38.noarch 27/154 Installing : filesystem-3.18-3.fc38.x86_64 28/154 Installing : basesystem-11-15.fc38.noarch 29/154 Installing : glibc-gconv-extra-2.37-19.fc38.x86_64 30/154 Running scriptlet: glibc-gconv-extra-2.37-19.fc38.x86_64 30/154 Installing : glibc-minimal-langpack-2.37-19.fc38.x86_64 31/154 Installing : glibc-common-2.37-19.fc38.x86_64 32/154 Running scriptlet: glibc-2.37-19.fc38.x86_64 33/154 Installing : glibc-2.37-19.fc38.x86_64 33/154 Running scriptlet: glibc-2.37-19.fc38.x86_64 33/154 Installing : ncurses-libs-6.4-7.20230520.fc38.1.x86_64 34/154 Installing : bash-5.2.26-1.fc38.x86_64 35/154 Running scriptlet: bash-5.2.26-1.fc38.x86_64 35/154 Installing : zlib-1.2.13-3.fc38.x86_64 36/154 Installing : xz-libs-5.4.1-1.fc38.x86_64 37/154 Installing : bzip2-libs-1.0.8-13.fc38.x86_64 38/154 Installing : libzstd-1.5.6-1.fc38.x86_64 39/154 Installing : elfutils-libelf-0.191-1.fc38.x86_64 40/154 Installing : libuuid-2.38.1-4.fc38.x86_64 41/154 Installing : popt-1.19-2.fc38.x86_64 42/154 Installing : libstdc++-13.2.1-7.fc38.x86_64 43/154 Installing : libblkid-2.38.1-4.fc38.x86_64 44/154 Installing : readline-8.2-4.fc38.x86_64 45/154 Installing : gmp-1:6.2.1-4.fc38.x86_64 46/154 Installing : libattr-2.5.1-6.fc38.x86_64 47/154 Installing : libacl-2.3.1-7.fc38.x86_64 48/154 Installing : libcap-2.48-8.fc38.x86_64 49/154 Installing : libxcrypt-4.4.36-1.fc38.x86_64 50/154 Installing : lz4-libs-1.9.4-2.fc38.x86_64 51/154 Installing : libeconf-0.5.2-2.fc38.x86_64 52/154 Installing : systemd-libs-253.17-1.fc38.x86_64 53/154 Installing : mpfr-4.1.1-3.fc38.x86_64 54/154 Installing : dwz-0.15-2.fc38.x86_64 55/154 Installing : unzip-6.0-60.fc38.x86_64 56/154 Installing : file-libs-5.44-3.fc38.x86_64 57/154 Installing : file-5.44-3.fc38.x86_64 58/154 Installing : sqlite-libs-3.40.1-2.fc38.x86_64 59/154 Installing : libcom_err-1.46.5-4.fc38.x86_64 60/154 Installing : libsepol-3.5-1.fc38.x86_64 61/154 Installing : libsmartcols-2.38.1-4.fc38.x86_64 62/154 Installing : libtasn1-4.19.0-2.fc38.x86_64 63/154 Installing : lua-libs-5.4.4-9.fc38.x86_64 64/154 Installing : pcre2-10.42-1.fc38.1.x86_64 65/154 Installing : libselinux-3.5-1.fc38.x86_64 66/154 Installing : sed-4.8-12.fc38.x86_64 67/154 Installing : grep-3.8-3.fc38.x86_64 68/154 Installing : findutils-1:4.9.0-3.fc38.x86_64 69/154 Installing : xz-5.4.1-1.fc38.x86_64 70/154 Installing : libmount-2.38.1-4.fc38.x86_64 71/154 Installing : alternatives-1.26-1.fc38.x86_64 72/154 Installing : libcap-ng-0.8.3-8.fc38.x86_64 73/154 Installing : audit-libs-3.1.2-8.fc38.x86_64 74/154 Installing : pam-libs-1.5.2-16.fc38.x86_64 75/154 Installing : libsemanage-3.5-2.fc38.x86_64 76/154 Installing : shadow-utils-2:4.13-6.fc38.x86_64 77/154 Running scriptlet: libutempter-1.2.1-8.fc38.x86_64 78/154 Installing : libutempter-1.2.1-8.fc38.x86_64 78/154 Installing : util-linux-core-2.38.1-4.fc38.x86_64 79/154 Installing : tar-2:1.34-8.fc38.x86_64 80/154 Installing : zip-3.0-37.fc38.x86_64 81/154 Installing : zstd-1.5.6-1.fc38.x86_64 82/154 Installing : libfdisk-2.38.1-4.fc38.x86_64 83/154 Installing : bzip2-1.0.8-13.fc38.x86_64 84/154 Installing : libxml2-2.10.4-1.fc38.x86_64 85/154 Installing : ed-1.19-2.fc38.x86_64 86/154 Installing : patch-2.7.6-19.fc38.x86_64 87/154 Installing : elfutils-default-yama-scope-0.191-1.fc38.noarch 88/154 Running scriptlet: elfutils-default-yama-scope-0.191-1.fc38.noarch 88/154 Installing : cpio-2.13-14.fc38.x86_64 89/154 Installing : gdbm-libs-1:1.23-3.fc38.x86_64 90/154 Installing : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 91/154 Installing : jansson-2.13.1-6.fc38.x86_64 92/154 Installing : libbrotli-1.0.9-11.fc38.x86_64 93/154 Installing : libdb-5.3.28-55.fc38.x86_64 94/154 Installing : libffi-3.4.4-2.fc38.x86_64 95/154 Installing : p11-kit-0.25.3-1.fc38.x86_64 96/154 Installing : p11-kit-trust-0.25.3-1.fc38.x86_64 97/154 Running scriptlet: p11-kit-trust-0.25.3-1.fc38.x86_64 97/154 Installing : openssl-libs-1:3.0.9-2.fc38.x86_64 98/154 Installing : coreutils-9.1-12.fc38.x86_64 99/154 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noar 100/154 Installing : ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noar 100/154 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noar 100/154 Installing : gzip-1.12-3.fc38.x86_64 101/154 Running scriptlet: authselect-libs-1.4.3-1.fc38.x86_64 102/154 Installing : authselect-libs-1.4.3-1.fc38.x86_64 102/154 Installing : libarchive-3.6.1-4.fc38.x86_64 103/154 Installing : rpm-sequoia-1.6.0-1.fc38.x86_64 104/154 Installing : rpm-libs-4.18.2-1.fc38.x86_64 105/154 Installing : authselect-1.4.3-1.fc38.x86_64 106/154 Installing : cracklib-2.9.11-1.fc38.x86_64 107/154 Installing : libpwquality-1.4.5-3.fc38.x86_64 108/154 Installing : libevent-2.1.12-8.fc38.x86_64 109/154 Installing : openldap-2.6.6-1.fc38.x86_64 110/154 Installing : libpkgconf-1.8.0-6.fc38.x86_64 111/154 Installing : pkgconf-1.8.0-6.fc38.x86_64 112/154 Installing : pkgconf-pkg-config-1.8.0-6.fc38.x86_64 113/154 Installing : libsigsegv-2.14-4.fc38.x86_64 114/154 Installing : gawk-5.1.1-5.fc38.x86_64 115/154 Installing : libunistring-1.1-3.fc38.x86_64 116/154 Installing : libidn2-2.3.7-1.fc38.x86_64 117/154 Installing : libunistring1.0-1.0-1.fc38.x86_64 118/154 Installing : libpsl-0.21.2-2.fc38.x86_64 119/154 Installing : libverto-0.3.2-5.fc38.x86_64 120/154 Installing : diffutils-3.10-1.fc38.x86_64 121/154 Installing : keyutils-libs-1.6.3-1.fc38.x86_64 122/154 Installing : krb5-libs-1.21-3.fc38.x86_64 123/154 Installing : libtirpc-1.3.4-1.rc3.fc38.x86_64 124/154 Installing : libnsl2-2.0.0-5.fc38.x86_64 125/154 Installing : pam-1.5.2-16.fc38.x86_64 126/154 Installing : libssh-0.10.6-2.fc38.x86_64 127/154 Installing : libgomp-13.2.1-7.fc38.x86_64 128/154 Installing : libnghttp2-1.52.0-3.fc38.x86_64 129/154 Installing : libcurl-8.0.1-7.fc38.x86_64 130/154 Installing : elfutils-libs-0.191-1.fc38.x86_64 131/154 Installing : elfutils-debuginfod-client-0.191-1.fc38.x86_64 132/154 Installing : binutils-gold-2.39-16.fc38.x86_64 133/154 Installing : binutils-2.39-16.fc38.x86_64 134/154 Running scriptlet: binutils-2.39-16.fc38.x86_64 134/154 Installing : elfutils-0.191-1.fc38.x86_64 135/154 Installing : rpm-build-libs-4.18.2-1.fc38.x86_64 136/154 Installing : curl-8.0.1-7.fc38.x86_64 137/154 Running scriptlet: rpm-4.18.2-1.fc38.x86_64 138/154 Installing : rpm-4.18.2-1.fc38.x86_64 138/154 Installing : efi-srpm-macros-5-7.fc38.noarch 139/154 Installing : lua-srpm-macros-1-13.fc38.noarch 140/154 Installing : rpmautospec-rpm-macros-0.6.3-1.fc38.noarch 141/154 Installing : xxhash-libs-0.8.2-1.fc38.x86_64 142/154 Installing : gdb-minimal-14.1-3.fc38.x86_64 143/154 Installing : debugedit-5.0-9.fc38.x86_64 144/154 Installing : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 145/154 Installing : python-srpm-macros-3.11-10.fc38.noarch 146/154 Installing : forge-srpm-macros-0.3.1-1.fc38.noarch 147/154 Installing : go-srpm-macros-3.5.0-1.fc38.noarch 148/154 Installing : redhat-rpm-config-257-1.fc38.noarch 149/154 Installing : rpm-build-4.18.2-1.fc38.x86_64 150/154 Installing : pyproject-srpm-macros-1.12.0-1.fc38.noarch 151/154 Installing : util-linux-2.38.1-4.fc38.x86_64 152/154 Installing : which-2.21-39.fc38.x86_64 153/154 Installing : info-7.0.2-2.fc38.x86_64 154/154 Running scriptlet: filesystem-3.18-3.fc38.x86_64 154/154 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noar 154/154 Running scriptlet: authselect-libs-1.4.3-1.fc38.x86_64 154/154 Running scriptlet: rpm-4.18.2-1.fc38.x86_64 154/154 Running scriptlet: info-7.0.2-2.fc38.x86_64 154/154 Verifying : basesystem-11-15.fc38.noarch 1/154 Verifying : bzip2-1.0.8-13.fc38.x86_64 2/154 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 3/154 Verifying : cpio-2.13-14.fc38.x86_64 4/154 Verifying : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 5/154 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 6/154 Verifying : dwz-0.15-2.fc38.x86_64 7/154 Verifying : ed-1.19-2.fc38.x86_64 8/154 Verifying : efi-srpm-macros-5-7.fc38.noarch 9/154 Verifying : fedora-gpg-keys-38-1.noarch 10/154 Verifying : fedora-repos-38-1.noarch 11/154 Verifying : file-5.44-3.fc38.x86_64 12/154 Verifying : file-libs-5.44-3.fc38.x86_64 13/154 Verifying : filesystem-3.18-3.fc38.x86_64 14/154 Verifying : findutils-1:4.9.0-3.fc38.x86_64 15/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 16/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 17/154 Verifying : gawk-5.1.1-5.fc38.x86_64 18/154 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 19/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 20/154 Verifying : gmp-1:6.2.1-4.fc38.x86_64 21/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 22/154 Verifying : grep-3.8-3.fc38.x86_64 23/154 Verifying : gzip-1.12-3.fc38.x86_64 24/154 Verifying : info-7.0.2-2.fc38.x86_64 25/154 Verifying : jansson-2.13.1-6.fc38.x86_64 26/154 Verifying : libarchive-3.6.1-4.fc38.x86_64 27/154 Verifying : libattr-2.5.1-6.fc38.x86_64 28/154 Verifying : libblkid-2.38.1-4.fc38.x86_64 29/154 Verifying : libbrotli-1.0.9-11.fc38.x86_64 30/154 Verifying : libcom_err-1.46.5-4.fc38.x86_64 31/154 Verifying : libdb-5.3.28-55.fc38.x86_64 32/154 Verifying : libevent-2.1.12-8.fc38.x86_64 33/154 Verifying : libfdisk-2.38.1-4.fc38.x86_64 34/154 Verifying : libffi-3.4.4-2.fc38.x86_64 35/154 Verifying : libmount-2.38.1-4.fc38.x86_64 36/154 Verifying : libnsl2-2.0.0-5.fc38.x86_64 37/154 Verifying : libpkgconf-1.8.0-6.fc38.x86_64 38/154 Verifying : libpsl-0.21.2-2.fc38.x86_64 39/154 Verifying : libpwquality-1.4.5-3.fc38.x86_64 40/154 Verifying : libselinux-3.5-1.fc38.x86_64 41/154 Verifying : libsemanage-3.5-2.fc38.x86_64 42/154 Verifying : libsepol-3.5-1.fc38.x86_64 43/154 Verifying : libsigsegv-2.14-4.fc38.x86_64 44/154 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 45/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 46/154 Verifying : libunistring-1.1-3.fc38.x86_64 47/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 48/154 Verifying : libutempter-1.2.1-8.fc38.x86_64 49/154 Verifying : libuuid-2.38.1-4.fc38.x86_64 50/154 Verifying : libverto-0.3.2-5.fc38.x86_64 51/154 Verifying : lua-libs-5.4.4-9.fc38.x86_64 52/154 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 53/154 Verifying : mpfr-4.1.1-3.fc38.x86_64 54/154 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 55/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 56/154 Verifying : pam-1.5.2-16.fc38.x86_64 57/154 Verifying : pam-libs-1.5.2-16.fc38.x86_64 58/154 Verifying : patch-2.7.6-19.fc38.x86_64 59/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 60/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 61/154 Verifying : perl-srpm-macros-1-48.fc38.noarch 62/154 Verifying : pkgconf-1.8.0-6.fc38.x86_64 63/154 Verifying : pkgconf-m4-1.8.0-6.fc38.noarch 64/154 Verifying : pkgconf-pkg-config-1.8.0-6.fc38.x86_64 65/154 Verifying : popt-1.19-2.fc38.x86_64 66/154 Verifying : python-srpm-macros-3.11-10.fc38.noarch 67/154 Verifying : sed-4.8-12.fc38.x86_64 68/154 Verifying : setup-2.14.3-2.fc38.noarch 69/154 Verifying : shadow-utils-2:4.13-6.fc38.x86_64 70/154 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 71/154 Verifying : tar-2:1.34-8.fc38.x86_64 72/154 Verifying : unzip-6.0-60.fc38.x86_64 73/154 Verifying : util-linux-2.38.1-4.fc38.x86_64 74/154 Verifying : util-linux-core-2.38.1-4.fc38.x86_64 75/154 Verifying : which-2.21-39.fc38.x86_64 76/154 Verifying : xz-5.4.1-1.fc38.x86_64 77/154 Verifying : xz-libs-5.4.1-1.fc38.x86_64 78/154 Verifying : zlib-1.2.13-3.fc38.x86_64 79/154 Verifying : alternatives-1.26-1.fc38.x86_64 80/154 Verifying : ansible-srpm-macros-1-12.fc38.noarch 81/154 Verifying : audit-libs-3.1.2-8.fc38.x86_64 82/154 Verifying : authselect-1.4.3-1.fc38.x86_64 83/154 Verifying : authselect-libs-1.4.3-1.fc38.x86_64 84/154 Verifying : bash-5.2.26-1.fc38.x86_64 85/154 Verifying : binutils-2.39-16.fc38.x86_64 86/154 Verifying : binutils-gold-2.39-16.fc38.x86_64 87/154 Verifying : ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noar 88/154 Verifying : coreutils-9.1-12.fc38.x86_64 89/154 Verifying : coreutils-common-9.1-12.fc38.x86_64 90/154 Verifying : cracklib-2.9.11-1.fc38.x86_64 91/154 Verifying : curl-8.0.1-7.fc38.x86_64 92/154 Verifying : debugedit-5.0-9.fc38.x86_64 93/154 Verifying : diffutils-3.10-1.fc38.x86_64 94/154 Verifying : elfutils-0.191-1.fc38.x86_64 95/154 Verifying : elfutils-debuginfod-client-0.191-1.fc38.x86_64 96/154 Verifying : elfutils-default-yama-scope-0.191-1.fc38.noarch 97/154 Verifying : elfutils-libelf-0.191-1.fc38.x86_64 98/154 Verifying : elfutils-libs-0.191-1.fc38.x86_64 99/154 Verifying : fedora-release-38-36.noarch 100/154 Verifying : fedora-release-common-38-36.noarch 101/154 Verifying : fedora-release-identity-basic-38-36.noarch 102/154 Verifying : forge-srpm-macros-0.3.1-1.fc38.noarch 103/154 Verifying : gdb-minimal-14.1-3.fc38.x86_64 104/154 Verifying : glibc-2.37-19.fc38.x86_64 105/154 Verifying : glibc-common-2.37-19.fc38.x86_64 106/154 Verifying : glibc-gconv-extra-2.37-19.fc38.x86_64 107/154 Verifying : glibc-minimal-langpack-2.37-19.fc38.x86_64 108/154 Verifying : go-srpm-macros-3.5.0-1.fc38.noarch 109/154 Verifying : kernel-srpm-macros-1.0-19.fc38.noarch 110/154 Verifying : keyutils-libs-1.6.3-1.fc38.x86_64 111/154 Verifying : krb5-libs-1.21-3.fc38.x86_64 112/154 Verifying : libacl-2.3.1-7.fc38.x86_64 113/154 Verifying : libcap-2.48-8.fc38.x86_64 114/154 Verifying : libcap-ng-0.8.3-8.fc38.x86_64 115/154 Verifying : libcurl-8.0.1-7.fc38.x86_64 116/154 Verifying : libeconf-0.5.2-2.fc38.x86_64 117/154 Verifying : libgcc-13.2.1-7.fc38.x86_64 118/154 Verifying : libgomp-13.2.1-7.fc38.x86_64 119/154 Verifying : libidn2-2.3.7-1.fc38.x86_64 120/154 Verifying : libnghttp2-1.52.0-3.fc38.x86_64 121/154 Verifying : libssh-0.10.6-2.fc38.x86_64 122/154 Verifying : libssh-config-0.10.6-2.fc38.noarch 123/154 Verifying : libstdc++-13.2.1-7.fc38.x86_64 124/154 Verifying : libtirpc-1.3.4-1.rc3.fc38.x86_64 125/154 Verifying : libxcrypt-4.4.36-1.fc38.x86_64 126/154 Verifying : libxml2-2.10.4-1.fc38.x86_64 127/154 Verifying : libzstd-1.5.6-1.fc38.x86_64 128/154 Verifying : lua-srpm-macros-1-13.fc38.noarch 129/154 Verifying : ncurses-base-6.4-7.20230520.fc38.1.noarch 130/154 Verifying : ncurses-libs-6.4-7.20230520.fc38.1.x86_64 131/154 Verifying : openldap-2.6.6-1.fc38.x86_64 132/154 Verifying : openssl-libs-1:3.0.9-2.fc38.x86_64 133/154 Verifying : p11-kit-0.25.3-1.fc38.x86_64 134/154 Verifying : p11-kit-trust-0.25.3-1.fc38.x86_64 135/154 Verifying : package-notes-srpm-macros-0.5-8.fc38.noarch 136/154 Verifying : publicsuffix-list-dafsa-20240107-1.fc38.noarch 137/154 Verifying : pyproject-srpm-macros-1.12.0-1.fc38.noarch 138/154 Verifying : qt5-srpm-macros-5.15.12-1.fc38.noarch 139/154 Verifying : qt6-srpm-macros-6.6.0-1.fc38.noarch 140/154 Verifying : readline-8.2-4.fc38.x86_64 141/154 Verifying : redhat-rpm-config-257-1.fc38.noarch 142/154 Verifying : rpm-4.18.2-1.fc38.x86_64 143/154 Verifying : rpm-build-4.18.2-1.fc38.x86_64 144/154 Verifying : rpm-build-libs-4.18.2-1.fc38.x86_64 145/154 Verifying : rpm-libs-4.18.2-1.fc38.x86_64 146/154 Verifying : rpm-sequoia-1.6.0-1.fc38.x86_64 147/154 Verifying : rpmautospec-rpm-macros-0.6.3-1.fc38.noarch 148/154 Verifying : rust-srpm-macros-26.2-1.fc38.noarch 149/154 Verifying : systemd-libs-253.17-1.fc38.x86_64 150/154 Verifying : tzdata-2024a-1.fc38.noarch 151/154 Verifying : xxhash-libs-0.8.2-1.fc38.x86_64 152/154 Verifying : zip-3.0-37.fc38.x86_64 153/154 Verifying : zstd-1.5.6-1.fc38.x86_64 154/154 Installed products updated. Installed: alternatives-1.26-1.fc38.x86_64 ansible-srpm-macros-1-12.fc38.noarch audit-libs-3.1.2-8.fc38.x86_64 authselect-1.4.3-1.fc38.x86_64 authselect-libs-1.4.3-1.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.26-1.fc38.x86_64 binutils-2.39-16.fc38.x86_64 binutils-gold-2.39-16.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.11-1.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-7.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-9.fc38.x86_64 diffutils-3.10-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.191-1.fc38.x86_64 elfutils-debuginfod-client-0.191-1.fc38.x86_64 elfutils-default-yama-scope-0.191-1.fc38.noarch elfutils-libelf-0.191-1.fc38.x86_64 elfutils-libs-0.191-1.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-5.44-3.fc38.x86_64 file-libs-5.44-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch forge-srpm-macros-0.3.1-1.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-14.1-3.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-19.fc38.x86_64 glibc-common-2.37-19.fc38.x86_64 glibc-gconv-extra-2.37-19.fc38.x86_64 glibc-minimal-langpack-2.37-19.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.5.0-1.fc38.noarch grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch keyutils-libs-1.6.3-1.fc38.x86_64 krb5-libs-1.21-3.fc38.x86_64 libacl-2.3.1-7.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-8.fc38.x86_64 libcap-ng-0.8.3-8.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-7.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.5.2-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.2.1-7.fc38.x86_64 libgomp-13.2.1-7.fc38.x86_64 libidn2-2.3.7-1.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-3.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.6-2.fc38.x86_64 libssh-config-0.10.6-2.fc38.noarch libstdc++-13.2.1-7.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.4-1.rc3.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 libzstd-1.5.6-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-13.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-7.20230520.fc38.1.noarch ncurses-libs-6.4-7.20230520.fc38.1.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.6-1.fc38.x86_64 openssl-libs-1:3.0.9-2.fc38.x86_64 p11-kit-0.25.3-1.fc38.x86_64 p11-kit-trust-0.25.3-1.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20240107-1.fc38.noarch pyproject-srpm-macros-1.12.0-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.12-1.fc38.noarch qt6-srpm-macros-6.6.0-1.fc38.noarch readline-8.2-4.fc38.x86_64 redhat-rpm-config-257-1.fc38.noarch rpm-4.18.2-1.fc38.x86_64 rpm-build-4.18.2-1.fc38.x86_64 rpm-build-libs-4.18.2-1.fc38.x86_64 rpm-libs-4.18.2-1.fc38.x86_64 rpm-sequoia-1.6.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc38.noarch rust-srpm-macros-26.2-1.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.17-1.fc38.x86_64 tar-2:1.34-8.fc38.x86_64 tzdata-2024a-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.2-1.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-37.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.6-1.fc38.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc38.x86_64 ansible-srpm-macros-1-12.fc38.noarch audit-libs-3.1.2-8.fc38.x86_64 authselect-1.4.3-1.fc38.x86_64 authselect-libs-1.4.3-1.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.26-1.fc38.x86_64 binutils-2.39-16.fc38.x86_64 binutils-gold-2.39-16.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60_v7.0.306-1.0.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.11-1.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-7.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-9.fc38.x86_64 diffutils-3.10-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.191-1.fc38.x86_64 elfutils-debuginfod-client-0.191-1.fc38.x86_64 elfutils-default-yama-scope-0.191-1.fc38.noarch elfutils-libelf-0.191-1.fc38.x86_64 elfutils-libs-0.191-1.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-5.44-3.fc38.x86_64 file-libs-5.44-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-4.9.0-3.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch forge-srpm-macros-0.3.1-1.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-14.1-3.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-19.fc38.x86_64 glibc-common-2.37-19.fc38.x86_64 glibc-gconv-extra-2.37-19.fc38.x86_64 glibc-minimal-langpack-2.37-19.fc38.x86_64 gmp-6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.5.0-1.fc38.noarch gpg-pubkey-eb10b464-6202d9c6 grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch keyutils-libs-1.6.3-1.fc38.x86_64 krb5-libs-1.21-3.fc38.x86_64 libacl-2.3.1-7.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-8.fc38.x86_64 libcap-ng-0.8.3-8.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-7.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.5.2-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.2.1-7.fc38.x86_64 libgomp-13.2.1-7.fc38.x86_64 libidn2-2.3.7-1.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-3.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.6-2.fc38.x86_64 libssh-config-0.10.6-2.fc38.noarch libstdc++-13.2.1-7.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.4-1.rc3.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 libzstd-1.5.6-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-13.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-7.20230520.fc38.1.noarch ncurses-libs-6.4-7.20230520.fc38.1.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.6-1.fc38.x86_64 openssl-libs-3.0.9-2.fc38.x86_64 p11-kit-0.25.3-1.fc38.x86_64 p11-kit-trust-0.25.3-1.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20240107-1.fc38.noarch pyproject-srpm-macros-1.12.0-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.12-1.fc38.noarch qt6-srpm-macros-6.6.0-1.fc38.noarch readline-8.2-4.fc38.x86_64 redhat-rpm-config-257-1.fc38.noarch rpm-4.18.2-1.fc38.x86_64 rpm-build-4.18.2-1.fc38.x86_64 rpm-build-libs-4.18.2-1.fc38.x86_64 rpm-libs-4.18.2-1.fc38.x86_64 rpm-sequoia-1.6.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc38.noarch rust-srpm-macros-26.2-1.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.17-1.fc38.x86_64 tar-1.34-8.fc38.x86_64 tzdata-2024a-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.2-1.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-37.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.6-1.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-38-x86_64-1714527263.837411/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1714527263.837411/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1714527263.837411/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1714527263.837411/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-0x9lsl6b/R-CRAN-secsse/R-CRAN-secsse.spec) Config(child) 0 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm) Config(fedora-38-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1714527263.837411/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm Start: build setup for R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 90 kB/s | 1.5 kB 00:00 Copr repository 234 MB/s | 26 MB 00:00 fedora 74 kB/s | 23 kB 00:00 updates 69 kB/s | 22 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-BH noarch 1.84.0.0-1.fc38.copr6880886 copr_base 9.8 M R-CRAN-DDD x86_64 5.2.2-1.fc38.copr6665594 copr_base 535 k R-CRAN-Rcpp x86_64 1.0.12-1.fc38.copr6877523 copr_base 2.0 M R-CRAN-RcppParallel x86_64 5.1.7-1.fc38.copr5812289 copr_base 140 k R-CRAN-ape x86_64 5.8-1.fc38.copr7307322 copr_base 3.0 M R-CRAN-geiger x86_64 2.0.11-1.fc38.copr5826639 copr_base 1.2 M R-CRAN-ggplot2 noarch 3.5.1-1.fc38.copr7342639 copr_base 4.8 M R-CRAN-rlang x86_64 1.1.3-1.fc38.copr6880930 copr_base 1.7 M R-CRAN-tibble x86_64 3.2.1-1.fc38.copr5821162 copr_base 632 k R-CRAN-treestats x86_64 1.0.5-1.fc38.copr6974899 copr_base 412 k R-core x86_64 4.3.3-1.fc38 updates 64 M R-devel x86_64 4.3.3-1.fc38 updates 10 k Installing dependencies: R-CRAN-DEoptim x86_64 2.2.8-1.fc38.copr5812626 copr_base 140 k R-CRAN-MASS x86_64 7.3.60.0.1-1.fc38.copr6895092 copr_base 1.2 M R-CRAN-Matrix x86_64 1.6.5-1.fc38.copr6886765 copr_base 4.1 M R-CRAN-R6 noarch 2.5.1-1.fc38.copr5812135 copr_base 96 k R-CRAN-RColorBrewer noarch 1.1.3-1.fc38.copr5812145 copr_base 65 k R-CRAN-RSpectra x86_64 0.16.1-1.fc38.copr6664807 copr_base 425 k R-CRAN-SparseM x86_64 1.81-1.fc38.copr5812258 copr_base 965 k R-CRAN-cli x86_64 3.6.2-1.fc38.copr6742501 copr_base 1.3 M R-CRAN-clusterGeneration noarch 1.3.8-1.fc38.copr6310452 copr_base 284 k R-CRAN-coda noarch 0.19.4.1-1.fc38.copr6978195 copr_base 361 k R-CRAN-codetools noarch 0.2.20-1.fc38.copr7307081 copr_base 103 k R-CRAN-colorspace x86_64 2.1.0-1.fc38.copr5812150 copr_base 2.4 M R-CRAN-combinat noarch 0.0.8-3.fc38.copr5812291 copr_base 55 k R-CRAN-deSolve x86_64 1.40-1.fc38.copr6700948 copr_base 2.2 M R-CRAN-digest x86_64 0.6.35-1.fc38.copr7305174 copr_base 226 k R-CRAN-doParallel noarch 1.0.17-1.fc38.copr5817836 copr_base 195 k R-CRAN-expm x86_64 0.999.9-1.fc38.copr6886803 copr_base 225 k R-CRAN-fansi x86_64 1.0.6-1.fc38.copr6735917 copr_base 341 k R-CRAN-farver x86_64 2.1.1-1.fc38.copr5812193 copr_base 1.3 M R-CRAN-fastmatch x86_64 1.1.4-1.fc38.copr6317709 copr_base 49 k R-CRAN-foreach noarch 1.5.2-1.fc38.copr5815655 copr_base 142 k R-CRAN-generics noarch 0.1.3-1.fc38.copr5812201 copr_base 99 k R-CRAN-glue x86_64 1.7.0-1.fc38.copr6877494 copr_base 166 k R-CRAN-gtable noarch 0.3.5-1.fc38.copr7338149 copr_base 232 k R-CRAN-igraph x86_64 2.0.3-1.fc38.copr7306786 copr_base 5.1 M R-CRAN-isoband x86_64 0.2.7-1.fc38.copr5813294 copr_base 1.6 M R-CRAN-iterators noarch 1.0.14-1.fc38.copr5812211 copr_base 348 k R-CRAN-labeling noarch 0.4.3-1.fc38.copr6354313 copr_base 77 k R-CRAN-lattice x86_64 0.22.6-1.fc38.copr7307082 copr_base 1.4 M R-CRAN-lifecycle noarch 1.0.4-1.fc38.copr6614518 copr_base 131 k R-CRAN-magrittr x86_64 2.0.3-1.fc38.copr5812133 copr_base 222 k R-CRAN-maps x86_64 3.4.2-1.fc38.copr6761068 copr_base 2.3 M R-CRAN-mgcv x86_64 1.9.1-1.fc38.copr6775870 copr_base 3.3 M R-CRAN-mnormt x86_64 2.1.1-1.fc38.copr5814735 copr_base 197 k R-CRAN-munsell noarch 0.5.1-1.fc38.copr7306785 copr_base 251 k R-CRAN-mvtnorm x86_64 1.2.4-1.fc38.copr6700966 copr_base 743 k R-CRAN-ncbit noarch 2013.03.29.1-1.fc38.copr5812647 copr_base 9.5 M R-CRAN-nlme x86_64 3.1.164-1.fc38.copr6700968 copr_base 2.4 M R-CRAN-nloptr x86_64 2.0.3-1.fc38.copr5831161 copr_base 700 k R-CRAN-numDeriv noarch 2016.8.1.1-3.fc38.copr5812231 copr_base 128 k R-CRAN-optimParallel noarch 1.0.2-1.fc38.copr5814069 copr_base 209 k R-CRAN-phangorn x86_64 2.11.1-1.fc38.copr6665417 copr_base 2.5 M R-CRAN-phytools noarch 2.1.1-1.fc38.copr6877519 copr_base 2.6 M R-CRAN-pillar noarch 1.9.0-1.fc38.copr5819458 copr_base 624 k R-CRAN-pkgconfig noarch 2.0.3-3.fc38.copr5812134 copr_base 30 k R-CRAN-quadprog x86_64 1.5.8-3.fc38.copr5812307 copr_base 44 k R-CRAN-scales noarch 1.3.0-1.fc38.copr6704012 copr_base 705 k R-CRAN-scatterplot3d noarch 0.3.44-1.fc38.copr5891701 copr_base 355 k R-CRAN-subplex x86_64 1.8-1.fc38.copr5812646 copr_base 49 k R-CRAN-utf8 x86_64 1.2.4-1.fc38.copr6555966 copr_base 151 k R-CRAN-vctrs x86_64 0.6.5-1.fc38.copr6715464 copr_base 1.3 M R-CRAN-viridisLite noarch 0.4.2-1.fc38.copr5868842 copr_base 1.2 M R-CRAN-withr noarch 3.0.0-1.fc38.copr6911503 copr_base 268 k R-core-devel x86_64 4.3.3-1.fc38 updates 94 k R-java x86_64 4.3.3-1.fc38 updates 11 k R-java-devel x86_64 4.3.3-1.fc38 updates 10 k R-littler x86_64 0.3.19-1.fc38 updates 76 k R-rpm-macros noarch 1.2.1-6.fc38 fedora 11 k alsa-lib x86_64 1.2.11-2.fc38 updates 520 k annobin-docs noarch 12.40-1.fc38 updates 87 k annobin-plugin-gcc x86_64 12.40-1.fc38 updates 955 k avahi-libs x86_64 0.8-22.fc38 updates 66 k brotli x86_64 1.0.9-11.fc38 fedora 316 k brotli-devel x86_64 1.0.9-11.fc38 fedora 31 k bzip2-devel x86_64 1.0.8-13.fc38 fedora 214 k cairo x86_64 1.17.8-4.fc38 updates 704 k cmake-filesystem x86_64 3.27.7-1.fc38 updates 19 k copy-jdk-configs noarch 4.1-2.fc38 fedora 28 k cpp x86_64 13.2.1-7.fc38 updates 11 M crypto-policies-scripts noarch 20230301-1.gita12f7b2.fc38 fedora 116 k cups-libs x86_64 1:2.4.7-13.fc38 updates 268 k dbus-libs x86_64 1:1.14.10-1.fc38 updates 156 k desktop-file-utils x86_64 0.26-8.fc38 fedora 71 k emacs-filesystem noarch 1:29.3-1.fc38 updates 7.2 k expat x86_64 2.6.0-1.fc38 updates 112 k flexiblas x86_64 3.4.2-1.fc38 updates 25 k flexiblas-devel x86_64 3.4.2-1.fc38 updates 121 k flexiblas-netlib x86_64 3.4.2-1.fc38 updates 3.1 M flexiblas-netlib64 x86_64 3.4.2-1.fc38 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.2-1.fc38 updates 17 k flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc38 updates 17 k fontconfig x86_64 2.14.2-2.fc38 updates 295 k fontconfig-devel x86_64 2.14.2-2.fc38 updates 163 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.0-2.fc38 fedora 414 k freetype-devel x86_64 2.13.0-2.fc38 fedora 945 k fribidi x86_64 1.0.12-3.fc38 fedora 89 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc x86_64 13.2.1-7.fc38 updates 34 M gcc-c++ x86_64 13.2.1-7.fc38 updates 13 M gcc-gfortran x86_64 13.2.1-7.fc38 updates 12 M gcc-plugin-annobin x86_64 13.2.1-7.fc38 updates 52 k gettext x86_64 0.21.1-2.fc38 fedora 1.0 M gettext-envsubst x86_64 0.21.1-2.fc38 fedora 36 k gettext-libs x86_64 0.21.1-2.fc38 fedora 320 k gettext-runtime x86_64 0.21.1-2.fc38 fedora 117 k glib2 x86_64 2.76.6-1.fc38 updates 2.8 M glib2-devel x86_64 2.76.6-1.fc38 updates 586 k glibc-devel x86_64 2.37-19.fc38 updates 56 k glibc-headers-x86 noarch 2.37-19.fc38 updates 537 k glpk x86_64 5.0-6.fc38 fedora 387 k gnutls x86_64 3.8.5-1.fc38 updates 1.1 M google-noto-fonts-common noarch 20230201-2.fc38 updates 16 k google-noto-sans-vf-fonts noarch 20230201-2.fc38 updates 579 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k graphite2-devel x86_64 1.3.14-11.fc38 fedora 20 k guile22 x86_64 2.2.7-7.fc38 fedora 6.5 M harfbuzz x86_64 7.1.0-1.fc38 fedora 889 k harfbuzz-devel x86_64 7.1.0-1.fc38 fedora 445 k harfbuzz-icu x86_64 7.1.0-1.fc38 fedora 16 k java-17-openjdk x86_64 1:17.0.9.0.9-3.fc38 updates 407 k java-17-openjdk-devel x86_64 1:17.0.9.0.9-3.fc38 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.9.0.9-3.fc38 updates 44 M javapackages-filesystem noarch 6.1.0-7.fc38 fedora 13 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k kernel-headers x86_64 6.8.3-100.fc38 updates 1.6 M langpacks-core-font-en noarch 3.0-32.fc38 updates 9.6 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libRmath x86_64 4.3.3-1.fc38 updates 122 k libRmath-devel x86_64 4.3.3-1.fc38 updates 16 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libX11 x86_64 1.8.9-1.fc38 updates 649 k libX11-common noarch 1.8.9-1.fc38 updates 176 k libX11-devel x86_64 1.8.9-1.fc38 updates 1.0 M libX11-xcb x86_64 1.8.9-1.fc38 updates 12 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXcomposite x86_64 0.4.5-9.fc38 fedora 23 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXft x86_64 2.3.8-2.fc38 updates 72 k libXft-devel x86_64 2.3.8-2.fc38 updates 50 k libXi x86_64 1.8.1-1.fc38 updates 40 k libXmu x86_64 1.1.4-2.fc38 fedora 77 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXrender-devel x86_64 0.9.11-2.fc38 fedora 19 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libXtst x86_64 1.2.4-2.fc38 fedora 20 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid-devel x86_64 2.38.1-4.fc38 fedora 16 k libdatrie x86_64 0.2.13-5.fc38 fedora 32 k libffi-devel x86_64 3.4.4-2.fc38 fedora 29 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.2.1-7.fc38 updates 910 k libicu x86_64 72.1-2.fc38 fedora 10 M libicu-devel x86_64 72.1-2.fc38 fedora 918 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k liblerc x86_64 4.0.0-3.fc38 fedora 202 k libmount-devel x86_64 2.38.1-4.fc38 fedora 18 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libpng-devel x86_64 2:1.6.37-14.fc38 fedora 291 k libquadmath x86_64 13.2.1-7.fc38 updates 200 k libquadmath-devel x86_64 13.2.1-7.fc38 updates 41 k libselinux-devel x86_64 3.5-1.fc38 fedora 151 k libsepol-devel x86_64 3.5-1.fc38 fedora 49 k libstdc++-devel x86_64 13.2.1-7.fc38 updates 2.6 M libthai x86_64 0.1.29-4.fc38 fedora 213 k libtiff x86_64 4.4.0-8.fc38 updates 201 k libtirpc-devel x86_64 1.3.4-1.rc3.fc38 updates 124 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libwebp x86_64 1.3.2-2.fc38 updates 284 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-1.fc38 updates 30 k libxml2-devel x86_64 2.10.4-1.fc38 updates 531 k lksctp-tools x86_64 1.0.19-3.fc38 fedora 92 k lua x86_64 5.4.4-9.fc38 fedora 190 k lua-posix x86_64 35.1-5.fc38 fedora 138 k make x86_64 1:4.4.1-1.fc38 updates 588 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k nettle x86_64 3.8-3.fc38 fedora 412 k nspr x86_64 4.35.0-17.fc38 updates 137 k nss x86_64 3.99.0-1.fc38 updates 703 k nss-softokn x86_64 3.99.0-1.fc38 updates 419 k nss-softokn-freebl x86_64 3.99.0-1.fc38 updates 381 k nss-sysinit x86_64 3.99.0-1.fc38 updates 18 k nss-util x86_64 3.99.0-1.fc38 updates 87 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openblas-openmp64 x86_64 0.3.21-4.fc38 fedora 4.9 M pango x86_64 1.50.14-1.fc38 fedora 342 k pcre2-devel x86_64 10.42-1.fc38.1 fedora 506 k pcre2-utf16 x86_64 10.42-1.fc38.1 fedora 214 k pcre2-utf32 x86_64 10.42-1.fc38.1 fedora 201 k pixman x86_64 0.42.2-1.fc38 fedora 285 k python-pip-wheel noarch 22.3.1-3.fc38 updates 1.4 M python-setuptools-wheel noarch 65.5.1-2.fc38 fedora 715 k python3 x86_64 3.11.8-2.fc38 updates 28 k python3-libs x86_64 3.11.8-2.fc38 updates 9.6 M suitesparse x86_64 5.13.0-2.fc38 fedora 1.1 M sysprof-capture-devel x86_64 3.48.0-1.fc38 fedora 58 k tbb x86_64 2020.3-16.fc38 fedora 169 k tbb-devel x86_64 2020.3-16.fc38 fedora 335 k tcl x86_64 1:8.6.12-4.fc38 fedora 1.1 M tcl-devel x86_64 1:8.6.12-4.fc38 fedora 169 k tk x86_64 1:8.6.12-4.fc38 fedora 1.6 M tk-devel x86_64 1:8.6.12-4.fc38 fedora 538 k tre x86_64 0.8.0-39.20140228gitc2f5d13.fc38 fedora 43 k tre-common noarch 0.8.0-39.20140228gitc2f5d13.fc38 fedora 31 k tre-devel x86_64 0.8.0-39.20140228gitc2f5d13.fc38 fedora 12 k ttmkfdir x86_64 3.0.9-67.fc38 fedora 54 k tzdata-java noarch 2024a-1.fc38 updates 207 k xdg-utils noarch 1.1.3-15.fc38 updates 77 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-35.fc38 fedora 505 k xorg-x11-proto-devel noarch 2022.2-3.fc38 fedora 299 k xz-devel x86_64 5.4.1-1.fc38 fedora 65 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Transaction Summary ======================================================================================== Install 221 Packages Total size: 347 M Total download size: 40 M Installed size: 1.1 G Downloading Packages: [SKIPPED] R-CRAN-MASS-7.3.60.0.1-1.fc38.copr6895092.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-Matrix-1.6.5-1.fc38.copr6886765.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-R6-2.5.1-1.fc38.copr5812135.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-RColorBrewer-1.1.3-1.fc38.copr5812145.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-Rcpp-1.0.12-1.fc38.copr6877523.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-cli-3.6.2-1.fc38.copr6742501.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-colorspace-2.1.0-1.fc38.copr5812150.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-digest-0.6.35-1.fc38.copr7305174.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-fansi-1.0.6-1.fc38.copr6735917.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-farver-2.1.1-1.fc38.copr5812193.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-generics-0.1.3-1.fc38.copr5812201.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-ggplot2-3.5.1-1.fc38.copr7342639.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-glue-1.7.0-1.fc38.copr6877494.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-gtable-0.3.5-1.fc38.copr7338149.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-igraph-2.0.3-1.fc38.copr7306786.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-isoband-0.2.7-1.fc38.copr5813294.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-labeling-0.4.3-1.fc38.copr6354313.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-lattice-0.22.6-1.fc38.copr7307082.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lifecycle-1.0.4-1.fc38.copr6614518.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-magrittr-2.0.3-1.fc38.copr5812133.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-mgcv-1.9.1-1.fc38.copr6775870.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-munsell-0.5.1-1.fc38.copr7306785.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-nlme-3.1.164-1.fc38.copr6700968.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-pillar-1.9.0-1.fc38.copr5819458.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-pkgconfig-2.0.3-3.fc38.copr5812134.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-rlang-1.1.3-1.fc38.copr6880930.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-scales-1.3.0-1.fc38.copr6704012.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-tibble-3.2.1-1.fc38.copr5821162.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-utf8-1.2.4-1.fc38.copr6555966.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-vctrs-0.6.5-1.fc38.copr6715464.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-viridisLite-0.4.2-1.fc38.copr5868842.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-withr-3.0.0-1.fc38.copr6911503.noarch.rpm: Already downloaded [SKIPPED] R-rpm-macros-1.2.1-6.fc38.noarch.rpm: Already downloaded [SKIPPED] brotli-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] brotli-devel-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-devel-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] copy-jdk-configs-4.1-2.fc38.noarch.rpm: Already downloaded [SKIPPED] crypto-policies-scripts-20230301-1.gita12f7b2.fc38.noarch.rpm: Already downloaded [SKIPPED] desktop-file-utils-0.26-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] freetype-devel-2.13.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] fribidi-1.0.12-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gettext-0.21.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gettext-envsubst-0.21.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gettext-libs-0.21.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gettext-runtime-0.21.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] glpk-5.0-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] graphite2-1.3.14-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] graphite2-devel-1.3.14-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-7.1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-devel-7.1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-icu-7.1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] javapackages-filesystem-6.1.0-7.fc38.noarch.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-25.fc38.x86_64.rpm: Already downloaded [SKIPPED] libICE-1.0.10-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] libSM-1.2.3-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXau-1.0.11-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXau-devel-1.0.11-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXcomposite-0.4.5-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXext-1.3.5-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXmu-1.1.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXrender-0.9.11-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXrender-devel-0.9.11-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXt-1.2.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXtst-1.2.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libblkid-devel-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libdatrie-0.2.13-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libffi-devel-3.4.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libfontenc-1.1.6-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libicu-72.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libicu-devel-72.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libjpeg-turbo-2.1.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] liblerc-4.0.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-devel-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpng-1.6.37-14.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpng-devel-1.6.37-14.fc38.x86_64.rpm: Already downloaded [SKIPPED] libselinux-devel-3.5-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsepol-devel-3.5-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libthai-0.1.29-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcb-1.13.1-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcb-devel-1.13.1-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] lksctp-tools-1.0.19-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-5.4.4-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-posix-35.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] mkfontscale-1.2.2-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.8-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] openblas-0.3.21-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] openblas-openmp-0.3.21-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] openblas-openmp64-0.3.21-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] pango-1.50.14-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] pcre2-devel-10.42-1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-utf16-10.42-1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-utf32-10.42-1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] pixman-0.42.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-65.5.1-2.fc38.noarch.rpm: Already downloaded [SKIPPED] suitesparse-5.13.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] sysprof-capture-devel-3.48.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] tcl-8.6.12-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] tcl-devel-8.6.12-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] tk-8.6.12-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] tk-devel-8.6.12-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] tre-0.8.0-39.20140228gitc2f5d13.fc38.x86_64.rpm: Already downloaded [SKIPPED] tre-common-0.8.0-39.20140228gitc2f5d13.fc38.noarch.rpm: Already downloaded [SKIPPED] tre-devel-0.8.0-39.20140228gitc2f5d13.fc38.x86_64.rpm: Already downloaded [SKIPPED] ttmkfdir-3.0.9-67.fc38.x86_64.rpm: Already downloaded [SKIPPED] xml-common-0.6.3-60.fc38.noarch.rpm: Already downloaded [SKIPPED] xorg-x11-fonts-Type1-7.5-35.fc38.noarch.rpm: Already downloaded [SKIPPED] xorg-x11-proto-devel-2022.2-3.fc38.noarch.rpm: Already downloaded [SKIPPED] xz-devel-5.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-devel-1.2.13-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] R-core-4.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] R-core-devel-4.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] R-devel-4.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] R-java-4.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] R-java-devel-4.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] R-littler-0.3.19-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] alsa-lib-1.2.11-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] annobin-docs-12.40-1.fc38.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.40-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] avahi-libs-0.8-22.fc38.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.17.8-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.7-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] cpp-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] cups-libs-2.4.7-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] dbus-libs-1.14.10-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] emacs-filesystem-29.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] expat-2.6.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-3.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-devel-3.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib64-3.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp64-3.4.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-2.14.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-devel-2.14.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-c++-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-gfortran-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] glib2-2.76.6-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] glib2-devel-2.76.6-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.37-19.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.37-19.fc38.noarch.rpm: Already downloaded [SKIPPED] gnutls-3.8.5-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20230201-2.fc38.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20230201-2.fc38.noarch.rpm: Already downloaded [SKIPPED] java-17-openjdk-17.0.9.0.9-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-devel-17.0.9.0.9-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-headless-17.0.9.0.9-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-6.8.3-100.fc38.x86_64.rpm: Already downloaded [SKIPPED] langpacks-core-font-en-3.0-32.fc38.noarch.rpm: Already downloaded [SKIPPED] libRmath-4.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libRmath-devel-4.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.8.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-common-1.8.9-1.fc38.noarch.rpm: Already downloaded [SKIPPED] libX11-devel-1.8.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-xcb-1.8.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXft-2.3.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXft-devel-2.3.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXi-1.8.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgfortran-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-devel-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libstdc++-devel-13.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtiff-4.4.0-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-devel-1.3.4-1.rc3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libwebp-1.3.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxml2-devel-2.10.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] make-4.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] nspr-4.35.0-17.fc38.x86_64.rpm: Already downloaded [SKIPPED] nss-3.99.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] nss-softokn-3.99.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] nss-softokn-freebl-3.99.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] nss-sysinit-3.99.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] nss-util-3.99.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] python-pip-wheel-22.3.1-3.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-3.11.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] python3-libs-3.11.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] tzdata-java-2024a-1.fc38.noarch.rpm: Already downloaded [SKIPPED] xdg-utils-1.1.3-15.fc38.noarch.rpm: Already downloaded (189/221): R-CRAN-DEoptim-2.2.8-1.fc38.copr5812 3.5 MB/s | 140 kB 00:00 (190/221): R-CRAN-RSpectra-0.16.1-1.fc38.copr66 3.5 MB/s | 425 kB 00:00 (191/221): R-CRAN-DDD-5.2.2-1.fc38.copr6665594. 3.3 MB/s | 535 kB 00:00 (192/221): R-CRAN-RcppParallel-5.1.7-1.fc38.cop 45 MB/s | 140 kB 00:00 (193/221): R-CRAN-SparseM-1.81-1.fc38.copr58122 90 MB/s | 965 kB 00:00 (194/221): R-CRAN-ape-5.8-1.fc38.copr7307322.x8 18 MB/s | 3.0 MB 00:00 (195/221): R-CRAN-coda-0.19.4.1-1.fc38.copr6978 120 MB/s | 361 kB 00:00 (196/221): R-CRAN-codetools-0.2.20-1.fc38.copr7 18 MB/s | 103 kB 00:00 (197/221): R-CRAN-clusterGeneration-1.3.8-1.fc3 1.5 MB/s | 284 kB 00:00 (198/221): R-CRAN-combinat-0.0.8-3.fc38.copr581 1.6 MB/s | 55 kB 00:00 (199/221): R-CRAN-doParallel-1.0.17-1.fc38.copr 53 MB/s | 195 kB 00:00 (200/221): R-CRAN-BH-1.84.0.0-1.fc38.copr688088 25 MB/s | 9.8 MB 00:00 (201/221): R-CRAN-fastmatch-1.1.4-1.fc38.copr63 400 kB/s | 49 kB 00:00 (202/221): R-CRAN-expm-0.999.9-1.fc38.copr68868 1.4 MB/s | 225 kB 00:00 (203/221): R-CRAN-foreach-1.5.2-1.fc38.copr5815 12 MB/s | 142 kB 00:00 (204/221): R-CRAN-iterators-1.0.14-1.fc38.copr5 29 MB/s | 348 kB 00:00 (205/221): R-CRAN-deSolve-1.40-1.fc38.copr67009 11 MB/s | 2.2 MB 00:00 (206/221): R-CRAN-mnormt-2.1.1-1.fc38.copr58147 53 MB/s | 197 kB 00:00 (207/221): R-CRAN-mvtnorm-1.2.4-1.fc38.copr6700 48 MB/s | 743 kB 00:00 (208/221): R-CRAN-geiger-2.0.11-1.fc38.copr5826 12 MB/s | 1.2 MB 00:00 (209/221): R-CRAN-nloptr-2.0.3-1.fc38.copr58311 179 MB/s | 700 kB 00:00 (210/221): R-CRAN-numDeriv-2016.8.1.1-3.fc38.co 51 MB/s | 128 kB 00:00 (211/221): R-CRAN-ncbit-2013.03.29.1-1.fc38.cop 48 MB/s | 9.5 MB 00:00 (212/221): R-CRAN-phangorn-2.11.1-1.fc38.copr66 25 MB/s | 2.5 MB 00:00 (213/221): R-CRAN-optimParallel-1.0.2-1.fc38.co 898 kB/s | 209 kB 00:00 (214/221): R-CRAN-quadprog-1.5.8-3.fc38.copr581 22 MB/s | 44 kB 00:00 (215/221): R-CRAN-phytools-2.1.1-1.fc38.copr687 36 MB/s | 2.6 MB 00:00 (216/221): R-CRAN-maps-3.4.2-1.fc38.copr6761068 5.8 MB/s | 2.3 MB 00:00 (217/221): R-CRAN-subplex-1.8-1.fc38.copr581264 644 kB/s | 49 kB 00:00 (218/221): tbb-2020.3-16.fc38.x86_64.rpm 4.7 MB/s | 169 kB 00:00 (219/221): tbb-devel-2020.3-16.fc38.x86_64.rpm 4.6 MB/s | 335 kB 00:00 (220/221): R-CRAN-scatterplot3d-0.3.44-1.fc38.c 1.3 MB/s | 355 kB 00:00 (221/221): R-CRAN-treestats-1.0.5-1.fc38.copr69 889 kB/s | 412 kB 00:00 -------------------------------------------------------------------------------- Total 21 MB/s | 40 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-2.fc38.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86_64 1/1 Preparing : 1/1 Installing : libgfortran-13.2.1-7.fc38.x86_64 1/221 Installing : zlib-devel-1.2.13-3.fc38.x86_64 2/221 Installing : nspr-4.35.0-17.fc38.x86_64 3/221 Installing : nss-util-3.99.0-1.fc38.x86_64 4/221 Installing : libquadmath-13.2.1-7.fc38.x86_64 5/221 Installing : xorg-x11-proto-devel-2022.2-3.fc38.noarch 6/221 Installing : libpng-2:1.6.37-14.fc38.x86_64 7/221 Installing : libmpc-1.3.1-2.fc38.x86_64 8/221 Installing : tcl-1:8.6.12-4.fc38.x86_64 9/221 Installing : libicu-72.1-2.fc38.x86_64 10/221 Installing : libicu-devel-72.1-2.fc38.x86_64 11/221 Installing : tcl-devel-1:8.6.12-4.fc38.x86_64 12/221 Installing : libRmath-4.3.3-1.fc38.x86_64 13/221 Installing : cmake-filesystem-3.27.7-1.fc38.x86_64 14/221 Installing : xz-devel-5.4.1-1.fc38.x86_64 15/221 Installing : tbb-2020.3-16.fc38.x86_64 16/221 Installing : openblas-0.3.21-4.fc38.x86_64 17/221 Installing : libjpeg-turbo-2.1.4-2.fc38.x86_64 18/221 Installing : libXau-1.0.11-2.fc38.x86_64 19/221 Installing : libxcb-1.13.1-11.fc38.x86_64 20/221 Installing : libICE-1.0.10-10.fc38.x86_64 21/221 Installing : graphite2-1.3.14-11.fc38.x86_64 22/221 Installing : gettext-libs-0.21.1-2.fc38.x86_64 23/221 Installing : fonts-filesystem-1:2.0.5-11.fc38.noarch 24/221 Installing : bzip2-devel-1.0.8-13.fc38.x86_64 25/221 Installing : graphite2-devel-1.3.14-11.fc38.x86_64 26/221 Installing : libSM-1.2.3-12.fc38.x86_64 27/221 Installing : libXau-devel-1.0.11-2.fc38.x86_64 28/221 Installing : libxcb-devel-1.13.1-11.fc38.x86_64 29/221 Installing : openblas-openmp-0.3.21-4.fc38.x86_64 30/221 Installing : openblas-openmp64-0.3.21-4.fc38.x86_64 31/221 Installing : flexiblas-netlib64-3.4.2-1.fc38.x86_64 32/221 Installing : flexiblas-netlib-3.4.2-1.fc38.x86_64 33/221 Installing : flexiblas-openblas-openmp-3.4.2-1.fc38.x86_64 34/221 Installing : flexiblas-3.4.2-1.fc38.x86_64 35/221 Installing : flexiblas-openblas-openmp64-3.4.2-1.fc38.x86_64 36/221 Installing : flexiblas-devel-3.4.2-1.fc38.x86_64 37/221 Installing : suitesparse-5.13.0-2.fc38.x86_64 38/221 Installing : glpk-5.0-6.fc38.x86_64 39/221 Installing : tbb-devel-2020.3-16.fc38.x86_64 40/221 Installing : libxml2-devel-2.10.4-1.fc38.x86_64 41/221 Installing : libRmath-devel-4.3.3-1.fc38.x86_64 42/221 Installing : cpp-13.2.1-7.fc38.x86_64 43/221 Installing : libpng-devel-2:1.6.37-14.fc38.x86_64 44/221 Installing : nss-softokn-freebl-3.99.0-1.fc38.x86_64 45/221 Installing : nss-softokn-3.99.0-1.fc38.x86_64 46/221 Installing : tzdata-java-2024a-1.fc38.noarch 47/221 Installing : python-pip-wheel-22.3.1-3.fc38.noarch 48/221 Installing : libwebp-1.3.2-2.fc38.x86_64 49/221 Installing : libtirpc-devel-1.3.4-1.rc3.fc38.x86_64 50/221 Installing : libstdc++-devel-13.2.1-7.fc38.x86_64 51/221 Installing : libX11-xcb-1.8.9-1.fc38.x86_64 52/221 Installing : libX11-common-1.8.9-1.fc38.noarch 53/221 Installing : libX11-1.8.9-1.fc38.x86_64 54/221 Installing : libXext-1.3.5-2.fc38.x86_64 55/221 Installing : libXrender-0.9.11-2.fc38.x86_64 56/221 Installing : libX11-devel-1.8.9-1.fc38.x86_64 57/221 Installing : libXi-1.8.1-1.fc38.x86_64 58/221 Installing : libXt-1.2.1-4.fc38.x86_64 59/221 Installing : libXmu-1.1.4-2.fc38.x86_64 60/221 Installing : libXtst-1.2.4-2.fc38.x86_64 61/221 Installing : libXrender-devel-0.9.11-2.fc38.x86_64 62/221 Installing : libXcomposite-0.4.5-9.fc38.x86_64 63/221 Installing : kernel-headers-6.8.3-100.fc38.x86_64 64/221 Installing : google-noto-fonts-common-20230201-2.fc38.noarch 65/221 Installing : google-noto-sans-vf-fonts-20230201-2.fc38.noarch 66/221 Installing : langpacks-core-font-en-3.0-32.fc38.noarch 67/221 Installing : glibc-headers-x86-2.37-19.fc38.noarch 68/221 Installing : libxcrypt-devel-4.4.36-1.fc38.x86_64 69/221 Installing : glibc-devel-2.37-19.fc38.x86_64 70/221 Installing : expat-2.6.0-1.fc38.x86_64 71/221 Installing : emacs-filesystem-1:29.3-1.fc38.noarch 72/221 Installing : dbus-libs-1:1.14.10-1.fc38.x86_64 73/221 Installing : avahi-libs-0.8-22.fc38.x86_64 74/221 Installing : annobin-docs-12.40-1.fc38.noarch 75/221 Installing : alsa-lib-1.2.11-2.fc38.x86_64 76/221 Running scriptlet: xml-common-0.6.3-60.fc38.noarch 77/221 Installing : xml-common-0.6.3-60.fc38.noarch 77/221 Installing : tre-common-0.8.0-39.20140228gitc2f5d13.fc38.noar 78/221 Installing : tre-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 79/221 Installing : tre-devel-0.8.0-39.20140228gitc2f5d13.fc38.x86_6 80/221 Installing : sysprof-capture-devel-3.48.0-1.fc38.x86_64 81/221 Installing : python-setuptools-wheel-65.5.1-2.fc38.noarch 82/221 Installing : pixman-0.42.2-1.fc38.x86_64 83/221 Installing : pcre2-utf32-10.42-1.fc38.1.x86_64 84/221 Installing : pcre2-utf16-10.42-1.fc38.1.x86_64 85/221 Installing : pcre2-devel-10.42-1.fc38.1.x86_64 86/221 Installing : nettle-3.8-3.fc38.x86_64 87/221 Installing : gnutls-3.8.5-1.fc38.x86_64 88/221 Installing : glib2-2.76.6-1.fc38.x86_64 89/221 Installing : cairo-1.17.8-4.fc38.x86_64 90/221 Installing : harfbuzz-7.1.0-1.fc38.x86_64 91/221 Installing : freetype-2.13.0-2.fc38.x86_64 92/221 Installing : fontconfig-2.14.2-2.fc38.x86_64 93/221 Running scriptlet: fontconfig-2.14.2-2.fc38.x86_64 93/221 Installing : libXft-2.3.8-2.fc38.x86_64 94/221 Running scriptlet: tk-1:8.6.12-4.fc38.x86_64 95/221 Installing : tk-1:8.6.12-4.fc38.x86_64 95/221 Installing : ttmkfdir-3.0.9-67.fc38.x86_64 96/221 Installing : harfbuzz-icu-7.1.0-1.fc38.x86_64 97/221 Installing : desktop-file-utils-0.26-8.fc38.x86_64 98/221 Installing : xdg-utils-1.1.3-15.fc38.noarch 99/221 Installing : cups-libs-1:2.4.7-13.fc38.x86_64 100/221 Installing : mpdecimal-2.5.1-6.fc38.x86_64 101/221 Installing : lua-posix-35.1-5.fc38.x86_64 102/221 Installing : lua-5.4.4-9.fc38.x86_64 103/221 Installing : copy-jdk-configs-4.1-2.fc38.noarch 104/221 Installing : lksctp-tools-1.0.19-3.fc38.x86_64 105/221 Installing : libtool-ltdl-2.4.7-6.fc38.x86_64 106/221 Installing : libsepol-devel-3.5-1.fc38.x86_64 107/221 Installing : libselinux-devel-3.5-1.fc38.x86_64 108/221 Installing : liblerc-4.0.0-3.fc38.x86_64 109/221 Installing : libfontenc-1.1.6-2.fc38.x86_64 110/221 Installing : mkfontscale-1.2.2-3.fc38.x86_64 111/221 Installing : xorg-x11-fonts-Type1-7.5-35.fc38.noarch 112/221 Running scriptlet: xorg-x11-fonts-Type1-7.5-35.fc38.noarch 112/221 Installing : libffi-devel-3.4.4-2.fc38.x86_64 113/221 Installing : libdatrie-0.2.13-5.fc38.x86_64 114/221 Installing : libthai-0.1.29-4.fc38.x86_64 115/221 Installing : libblkid-devel-2.38.1-4.fc38.x86_64 116/221 Installing : libmount-devel-2.38.1-4.fc38.x86_64 117/221 Installing : libb2-0.98.1-8.fc38.x86_64 118/221 Installing : python3-3.11.8-2.fc38.x86_64 119/221 Installing : python3-libs-3.11.8-2.fc38.x86_64 120/221 Installing : crypto-policies-scripts-20230301-1.gita12f7b2.fc 121/221 Installing : nss-sysinit-3.99.0-1.fc38.x86_64 122/221 Installing : nss-3.99.0-1.fc38.x86_64 123/221 Running scriptlet: nss-3.99.0-1.fc38.x86_64 123/221 Installing : glib2-devel-2.76.6-1.fc38.x86_64 124/221 Installing : jbigkit-libs-2.1-25.fc38.x86_64 125/221 Installing : libtiff-4.4.0-8.fc38.x86_64 126/221 Installing : javapackages-filesystem-6.1.0-7.fc38.noarch 127/221 Installing : java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86 128/221 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86 128/221 Installing : java-17-openjdk-1:17.0.9.0.9-3.fc38.x86_64 129/221 Running scriptlet: java-17-openjdk-1:17.0.9.0.9-3.fc38.x86_64 129/221 Installing : java-17-openjdk-devel-1:17.0.9.0.9-3.fc38.x86_64 130/221 Running scriptlet: java-17-openjdk-devel-1:17.0.9.0.9-3.fc38.x86_64 130/221 Installing : gettext-envsubst-0.21.1-2.fc38.x86_64 131/221 Installing : gettext-runtime-0.21.1-2.fc38.x86_64 132/221 Installing : gettext-0.21.1-2.fc38.x86_64 133/221 Installing : gc-8.2.2-3.fc38.x86_64 134/221 Installing : guile22-2.2.7-7.fc38.x86_64 135/221 Installing : make-1:4.4.1-1.fc38.x86_64 136/221 Installing : gcc-13.2.1-7.fc38.x86_64 137/221 Running scriptlet: gcc-13.2.1-7.fc38.x86_64 137/221 Installing : gcc-c++-13.2.1-7.fc38.x86_64 138/221 Installing : libquadmath-devel-13.2.1-7.fc38.x86_64 139/221 Installing : gcc-gfortran-13.2.1-7.fc38.x86_64 140/221 Installing : fribidi-1.0.12-3.fc38.x86_64 141/221 Installing : pango-1.50.14-1.fc38.x86_64 142/221 Installing : R-core-4.3.3-1.fc38.x86_64 143/221 Installing : R-CRAN-rlang-1.1.3-1.fc38.copr6880930.x86_64 144/221 Installing : R-CRAN-cli-3.6.2-1.fc38.copr6742501.x86_64 145/221 Installing : R-CRAN-glue-1.7.0-1.fc38.copr6877494.x86_64 146/221 Installing : R-CRAN-lifecycle-1.0.4-1.fc38.copr6614518.noarch 147/221 Installing : R-CRAN-vctrs-0.6.5-1.fc38.copr6715464.x86_64 148/221 Installing : R-CRAN-MASS-7.3.60.0.1-1.fc38.copr6895092.x86_64 149/221 Installing : R-CRAN-lattice-0.22.6-1.fc38.copr7307082.x86_64 150/221 Installing : R-CRAN-Matrix-1.6.5-1.fc38.copr6886765.x86_64 151/221 Installing : R-CRAN-nlme-3.1.164-1.fc38.copr6700968.x86_64 152/221 Installing : R-CRAN-digest-0.6.35-1.fc38.copr7305174.x86_64 153/221 Installing : R-CRAN-expm-0.999.9-1.fc38.copr6886803.x86_64 154/221 Installing : R-CRAN-coda-0.19.4.1-1.fc38.copr6978195.noarch 155/221 Installing : R-CRAN-colorspace-2.1.0-1.fc38.copr5812150.x86_6 156/221 Installing : R-CRAN-deSolve-1.40-1.fc38.copr6700948.x86_64 157/221 Installing : R-CRAN-fansi-1.0.6-1.fc38.copr6735917.x86_64 158/221 Installing : R-CRAN-iterators-1.0.14-1.fc38.copr5812211.noarc 159/221 Installing : R-CRAN-magrittr-2.0.3-1.fc38.copr5812133.x86_64 160/221 Installing : R-CRAN-pkgconfig-2.0.3-3.fc38.copr5812134.noarch 161/221 Installing : R-CRAN-subplex-1.8-1.fc38.copr5812646.x86_64 162/221 Installing : R-CRAN-igraph-2.0.3-1.fc38.copr7306786.x86_64 163/221 Installing : R-CRAN-munsell-0.5.1-1.fc38.copr7306785.noarch 164/221 Installing : R-CRAN-mgcv-1.9.1-1.fc38.copr6775870.x86_64 165/221 Installing : R-CRAN-clusterGeneration-1.3.8-1.fc38.copr631045 166/221 Installing : R-CRAN-gtable-0.3.5-1.fc38.copr7338149.noarch 167/221 Installing : R-CRAN-DEoptim-2.2.8-1.fc38.copr5812626.x86_64 168/221 Installing : R-CRAN-R6-2.5.1-1.fc38.copr5812135.noarch 169/221 Installing : R-CRAN-RColorBrewer-1.1.3-1.fc38.copr5812145.noa 170/221 Installing : R-CRAN-SparseM-1.81-1.fc38.copr5812258.x86_64 171/221 Installing : R-CRAN-codetools-0.2.20-1.fc38.copr7307081.noarc 172/221 Installing : R-CRAN-foreach-1.5.2-1.fc38.copr5815655.noarch 173/221 Installing : R-CRAN-doParallel-1.0.17-1.fc38.copr5817836.noar 174/221 Installing : R-CRAN-combinat-0.0.8-3.fc38.copr5812291.noarch 175/221 Installing : R-CRAN-farver-2.1.1-1.fc38.copr5812193.x86_64 176/221 Installing : R-CRAN-fastmatch-1.1.4-1.fc38.copr6317709.x86_64 177/221 Installing : R-CRAN-generics-0.1.3-1.fc38.copr5812201.noarch 178/221 Installing : R-CRAN-isoband-0.2.7-1.fc38.copr5813294.x86_64 179/221 Installing : R-CRAN-labeling-0.4.3-1.fc38.copr6354313.noarch 180/221 Installing : R-CRAN-maps-3.4.2-1.fc38.copr6761068.x86_64 181/221 Installing : R-CRAN-mnormt-2.1.1-1.fc38.copr5814735.x86_64 182/221 Installing : R-CRAN-mvtnorm-1.2.4-1.fc38.copr6700966.x86_64 183/221 Installing : R-CRAN-ncbit-2013.03.29.1-1.fc38.copr5812647.noa 184/221 Installing : R-CRAN-nloptr-2.0.3-1.fc38.copr5831161.x86_64 185/221 Installing : R-CRAN-numDeriv-2016.8.1.1-3.fc38.copr5812231.no 186/221 Installing : R-CRAN-optimParallel-1.0.2-1.fc38.copr5814069.no 187/221 Installing : R-CRAN-quadprog-1.5.8-3.fc38.copr5812307.x86_64 188/221 Installing : R-CRAN-scatterplot3d-0.3.44-1.fc38.copr5891701.n 189/221 Installing : R-CRAN-utf8-1.2.4-1.fc38.copr6555966.x86_64 190/221 Installing : R-CRAN-pillar-1.9.0-1.fc38.copr5819458.noarch 191/221 Installing : R-CRAN-tibble-3.2.1-1.fc38.copr5821162.x86_64 192/221 Installing : R-CRAN-viridisLite-0.4.2-1.fc38.copr5868842.noar 193/221 Installing : R-CRAN-scales-1.3.0-1.fc38.copr6704012.noarch 194/221 Installing : R-CRAN-withr-3.0.0-1.fc38.copr6911503.noarch 195/221 Installing : R-rpm-macros-1.2.1-6.fc38.noarch 196/221 Installing : R-java-4.3.3-1.fc38.x86_64 197/221 Installing : R-littler-0.3.19-1.fc38.x86_64 198/221 Installing : R-CRAN-Rcpp-1.0.12-1.fc38.copr6877523.x86_64 199/221 Installing : R-CRAN-ape-5.8-1.fc38.copr7307322.x86_64 200/221 Installing : R-CRAN-phangorn-2.11.1-1.fc38.copr6665417.x86_64 201/221 Installing : R-CRAN-phytools-2.1.1-1.fc38.copr6877519.noarch 202/221 Installing : R-CRAN-RSpectra-0.16.1-1.fc38.copr6664807.x86_64 203/221 Installing : brotli-1.0.9-11.fc38.x86_64 204/221 Installing : brotli-devel-1.0.9-11.fc38.x86_64 205/221 Installing : harfbuzz-devel-7.1.0-1.fc38.x86_64 206/221 Installing : freetype-devel-2.13.0-2.fc38.x86_64 207/221 Installing : fontconfig-devel-2.14.2-2.fc38.x86_64 208/221 Installing : libXft-devel-2.3.8-2.fc38.x86_64 209/221 Installing : tk-devel-1:8.6.12-4.fc38.x86_64 210/221 Installing : R-core-devel-4.3.3-1.fc38.x86_64 211/221 Installing : R-java-devel-4.3.3-1.fc38.x86_64 212/221 Installing : R-devel-4.3.3-1.fc38.x86_64 213/221 Installing : R-CRAN-treestats-1.0.5-1.fc38.copr6974899.x86_64 214/221 Installing : R-CRAN-DDD-5.2.2-1.fc38.copr6665594.x86_64 215/221 Installing : R-CRAN-geiger-2.0.11-1.fc38.copr5826639.x86_64 216/221 Installing : R-CRAN-ggplot2-3.5.1-1.fc38.copr7342639.noarch 217/221 Installing : R-CRAN-BH-1.84.0.0-1.fc38.copr6880886.noarch 218/221 Installing : R-CRAN-RcppParallel-5.1.7-1.fc38.copr5812289.x86 219/221 Installing : annobin-plugin-gcc-12.40-1.fc38.x86_64 220/221 Running scriptlet: annobin-plugin-gcc-12.40-1.fc38.x86_64 220/221 Installing : gcc-plugin-annobin-13.2.1-7.fc38.x86_64 221/221 Running scriptlet: gcc-plugin-annobin-13.2.1-7.fc38.x86_64 221/221 Running scriptlet: fontconfig-2.14.2-2.fc38.x86_64 221/221 Running scriptlet: copy-jdk-configs-4.1-2.fc38.noarch 221/221 Running scriptlet: crypto-policies-scripts-20230301-1.gita12f7b2.fc 221/221 Running scriptlet: nss-3.99.0-1.fc38.x86_64 221/221 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86 221/221 Running scriptlet: java-17-openjdk-1:17.0.9.0.9-3.fc38.x86_64 221/221 Running scriptlet: java-17-openjdk-devel-1:17.0.9.0.9-3.fc38.x86_64 221/221 Running scriptlet: gcc-plugin-annobin-13.2.1-7.fc38.x86_64 221/221 Verifying : R-CRAN-BH-1.84.0.0-1.fc38.copr6880886.noarch 1/221 Verifying : R-CRAN-DDD-5.2.2-1.fc38.copr6665594.x86_64 2/221 Verifying : R-CRAN-DEoptim-2.2.8-1.fc38.copr5812626.x86_64 3/221 Verifying : R-CRAN-MASS-7.3.60.0.1-1.fc38.copr6895092.x86_64 4/221 Verifying : R-CRAN-Matrix-1.6.5-1.fc38.copr6886765.x86_64 5/221 Verifying : R-CRAN-R6-2.5.1-1.fc38.copr5812135.noarch 6/221 Verifying : R-CRAN-RColorBrewer-1.1.3-1.fc38.copr5812145.noa 7/221 Verifying : R-CRAN-RSpectra-0.16.1-1.fc38.copr6664807.x86_64 8/221 Verifying : R-CRAN-Rcpp-1.0.12-1.fc38.copr6877523.x86_64 9/221 Verifying : R-CRAN-RcppParallel-5.1.7-1.fc38.copr5812289.x86 10/221 Verifying : R-CRAN-SparseM-1.81-1.fc38.copr5812258.x86_64 11/221 Verifying : R-CRAN-ape-5.8-1.fc38.copr7307322.x86_64 12/221 Verifying : R-CRAN-cli-3.6.2-1.fc38.copr6742501.x86_64 13/221 Verifying : R-CRAN-clusterGeneration-1.3.8-1.fc38.copr631045 14/221 Verifying : R-CRAN-coda-0.19.4.1-1.fc38.copr6978195.noarch 15/221 Verifying : R-CRAN-codetools-0.2.20-1.fc38.copr7307081.noarc 16/221 Verifying : R-CRAN-colorspace-2.1.0-1.fc38.copr5812150.x86_6 17/221 Verifying : R-CRAN-combinat-0.0.8-3.fc38.copr5812291.noarch 18/221 Verifying : R-CRAN-deSolve-1.40-1.fc38.copr6700948.x86_64 19/221 Verifying : R-CRAN-digest-0.6.35-1.fc38.copr7305174.x86_64 20/221 Verifying : R-CRAN-doParallel-1.0.17-1.fc38.copr5817836.noar 21/221 Verifying : R-CRAN-expm-0.999.9-1.fc38.copr6886803.x86_64 22/221 Verifying : R-CRAN-fansi-1.0.6-1.fc38.copr6735917.x86_64 23/221 Verifying : R-CRAN-farver-2.1.1-1.fc38.copr5812193.x86_64 24/221 Verifying : R-CRAN-fastmatch-1.1.4-1.fc38.copr6317709.x86_64 25/221 Verifying : R-CRAN-foreach-1.5.2-1.fc38.copr5815655.noarch 26/221 Verifying : R-CRAN-geiger-2.0.11-1.fc38.copr5826639.x86_64 27/221 Verifying : R-CRAN-generics-0.1.3-1.fc38.copr5812201.noarch 28/221 Verifying : R-CRAN-ggplot2-3.5.1-1.fc38.copr7342639.noarch 29/221 Verifying : R-CRAN-glue-1.7.0-1.fc38.copr6877494.x86_64 30/221 Verifying : R-CRAN-gtable-0.3.5-1.fc38.copr7338149.noarch 31/221 Verifying : R-CRAN-igraph-2.0.3-1.fc38.copr7306786.x86_64 32/221 Verifying : R-CRAN-isoband-0.2.7-1.fc38.copr5813294.x86_64 33/221 Verifying : R-CRAN-iterators-1.0.14-1.fc38.copr5812211.noarc 34/221 Verifying : R-CRAN-labeling-0.4.3-1.fc38.copr6354313.noarch 35/221 Verifying : R-CRAN-lattice-0.22.6-1.fc38.copr7307082.x86_64 36/221 Verifying : R-CRAN-lifecycle-1.0.4-1.fc38.copr6614518.noarch 37/221 Verifying : R-CRAN-magrittr-2.0.3-1.fc38.copr5812133.x86_64 38/221 Verifying : R-CRAN-maps-3.4.2-1.fc38.copr6761068.x86_64 39/221 Verifying : R-CRAN-mgcv-1.9.1-1.fc38.copr6775870.x86_64 40/221 Verifying : R-CRAN-mnormt-2.1.1-1.fc38.copr5814735.x86_64 41/221 Verifying : R-CRAN-munsell-0.5.1-1.fc38.copr7306785.noarch 42/221 Verifying : R-CRAN-mvtnorm-1.2.4-1.fc38.copr6700966.x86_64 43/221 Verifying : R-CRAN-ncbit-2013.03.29.1-1.fc38.copr5812647.noa 44/221 Verifying : R-CRAN-nlme-3.1.164-1.fc38.copr6700968.x86_64 45/221 Verifying : R-CRAN-nloptr-2.0.3-1.fc38.copr5831161.x86_64 46/221 Verifying : R-CRAN-numDeriv-2016.8.1.1-3.fc38.copr5812231.no 47/221 Verifying : R-CRAN-optimParallel-1.0.2-1.fc38.copr5814069.no 48/221 Verifying : R-CRAN-phangorn-2.11.1-1.fc38.copr6665417.x86_64 49/221 Verifying : R-CRAN-phytools-2.1.1-1.fc38.copr6877519.noarch 50/221 Verifying : R-CRAN-pillar-1.9.0-1.fc38.copr5819458.noarch 51/221 Verifying : R-CRAN-pkgconfig-2.0.3-3.fc38.copr5812134.noarch 52/221 Verifying : R-CRAN-quadprog-1.5.8-3.fc38.copr5812307.x86_64 53/221 Verifying : R-CRAN-rlang-1.1.3-1.fc38.copr6880930.x86_64 54/221 Verifying : R-CRAN-scales-1.3.0-1.fc38.copr6704012.noarch 55/221 Verifying : R-CRAN-scatterplot3d-0.3.44-1.fc38.copr5891701.n 56/221 Verifying : R-CRAN-subplex-1.8-1.fc38.copr5812646.x86_64 57/221 Verifying : R-CRAN-tibble-3.2.1-1.fc38.copr5821162.x86_64 58/221 Verifying : R-CRAN-treestats-1.0.5-1.fc38.copr6974899.x86_64 59/221 Verifying : R-CRAN-utf8-1.2.4-1.fc38.copr6555966.x86_64 60/221 Verifying : R-CRAN-vctrs-0.6.5-1.fc38.copr6715464.x86_64 61/221 Verifying : R-CRAN-viridisLite-0.4.2-1.fc38.copr5868842.noar 62/221 Verifying : R-CRAN-withr-3.0.0-1.fc38.copr6911503.noarch 63/221 Verifying : R-rpm-macros-1.2.1-6.fc38.noarch 64/221 Verifying : brotli-1.0.9-11.fc38.x86_64 65/221 Verifying : brotli-devel-1.0.9-11.fc38.x86_64 66/221 Verifying : bzip2-devel-1.0.8-13.fc38.x86_64 67/221 Verifying : copy-jdk-configs-4.1-2.fc38.noarch 68/221 Verifying : crypto-policies-scripts-20230301-1.gita12f7b2.fc 69/221 Verifying : desktop-file-utils-0.26-8.fc38.x86_64 70/221 Verifying : fonts-filesystem-1:2.0.5-11.fc38.noarch 71/221 Verifying : freetype-2.13.0-2.fc38.x86_64 72/221 Verifying : freetype-devel-2.13.0-2.fc38.x86_64 73/221 Verifying : fribidi-1.0.12-3.fc38.x86_64 74/221 Verifying : gc-8.2.2-3.fc38.x86_64 75/221 Verifying : gettext-0.21.1-2.fc38.x86_64 76/221 Verifying : gettext-envsubst-0.21.1-2.fc38.x86_64 77/221 Verifying : gettext-libs-0.21.1-2.fc38.x86_64 78/221 Verifying : gettext-runtime-0.21.1-2.fc38.x86_64 79/221 Verifying : glpk-5.0-6.fc38.x86_64 80/221 Verifying : graphite2-1.3.14-11.fc38.x86_64 81/221 Verifying : graphite2-devel-1.3.14-11.fc38.x86_64 82/221 Verifying : guile22-2.2.7-7.fc38.x86_64 83/221 Verifying : harfbuzz-7.1.0-1.fc38.x86_64 84/221 Verifying : harfbuzz-devel-7.1.0-1.fc38.x86_64 85/221 Verifying : harfbuzz-icu-7.1.0-1.fc38.x86_64 86/221 Verifying : javapackages-filesystem-6.1.0-7.fc38.noarch 87/221 Verifying : jbigkit-libs-2.1-25.fc38.x86_64 88/221 Verifying : libICE-1.0.10-10.fc38.x86_64 89/221 Verifying : libSM-1.2.3-12.fc38.x86_64 90/221 Verifying : libXau-1.0.11-2.fc38.x86_64 91/221 Verifying : libXau-devel-1.0.11-2.fc38.x86_64 92/221 Verifying : libXcomposite-0.4.5-9.fc38.x86_64 93/221 Verifying : libXext-1.3.5-2.fc38.x86_64 94/221 Verifying : libXmu-1.1.4-2.fc38.x86_64 95/221 Verifying : libXrender-0.9.11-2.fc38.x86_64 96/221 Verifying : libXrender-devel-0.9.11-2.fc38.x86_64 97/221 Verifying : libXt-1.2.1-4.fc38.x86_64 98/221 Verifying : libXtst-1.2.4-2.fc38.x86_64 99/221 Verifying : libb2-0.98.1-8.fc38.x86_64 100/221 Verifying : libblkid-devel-2.38.1-4.fc38.x86_64 101/221 Verifying : libdatrie-0.2.13-5.fc38.x86_64 102/221 Verifying : libffi-devel-3.4.4-2.fc38.x86_64 103/221 Verifying : libfontenc-1.1.6-2.fc38.x86_64 104/221 Verifying : libicu-72.1-2.fc38.x86_64 105/221 Verifying : libicu-devel-72.1-2.fc38.x86_64 106/221 Verifying : libjpeg-turbo-2.1.4-2.fc38.x86_64 107/221 Verifying : liblerc-4.0.0-3.fc38.x86_64 108/221 Verifying : libmount-devel-2.38.1-4.fc38.x86_64 109/221 Verifying : libmpc-1.3.1-2.fc38.x86_64 110/221 Verifying : libpng-2:1.6.37-14.fc38.x86_64 111/221 Verifying : libpng-devel-2:1.6.37-14.fc38.x86_64 112/221 Verifying : libselinux-devel-3.5-1.fc38.x86_64 113/221 Verifying : libsepol-devel-3.5-1.fc38.x86_64 114/221 Verifying : libthai-0.1.29-4.fc38.x86_64 115/221 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 116/221 Verifying : libxcb-1.13.1-11.fc38.x86_64 117/221 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 118/221 Verifying : lksctp-tools-1.0.19-3.fc38.x86_64 119/221 Verifying : lua-5.4.4-9.fc38.x86_64 120/221 Verifying : lua-posix-35.1-5.fc38.x86_64 121/221 Verifying : mkfontscale-1.2.2-3.fc38.x86_64 122/221 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 123/221 Verifying : nettle-3.8-3.fc38.x86_64 124/221 Verifying : openblas-0.3.21-4.fc38.x86_64 125/221 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 126/221 Verifying : openblas-openmp64-0.3.21-4.fc38.x86_64 127/221 Verifying : pango-1.50.14-1.fc38.x86_64 128/221 Verifying : pcre2-devel-10.42-1.fc38.1.x86_64 129/221 Verifying : pcre2-utf16-10.42-1.fc38.1.x86_64 130/221 Verifying : pcre2-utf32-10.42-1.fc38.1.x86_64 131/221 Verifying : pixman-0.42.2-1.fc38.x86_64 132/221 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 133/221 Verifying : suitesparse-5.13.0-2.fc38.x86_64 134/221 Verifying : sysprof-capture-devel-3.48.0-1.fc38.x86_64 135/221 Verifying : tbb-2020.3-16.fc38.x86_64 136/221 Verifying : tbb-devel-2020.3-16.fc38.x86_64 137/221 Verifying : tcl-1:8.6.12-4.fc38.x86_64 138/221 Verifying : tcl-devel-1:8.6.12-4.fc38.x86_64 139/221 Verifying : tk-1:8.6.12-4.fc38.x86_64 140/221 Verifying : tk-devel-1:8.6.12-4.fc38.x86_64 141/221 Verifying : tre-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 142/221 Verifying : tre-common-0.8.0-39.20140228gitc2f5d13.fc38.noar 143/221 Verifying : tre-devel-0.8.0-39.20140228gitc2f5d13.fc38.x86_6 144/221 Verifying : ttmkfdir-3.0.9-67.fc38.x86_64 145/221 Verifying : xml-common-0.6.3-60.fc38.noarch 146/221 Verifying : xorg-x11-fonts-Type1-7.5-35.fc38.noarch 147/221 Verifying : xorg-x11-proto-devel-2022.2-3.fc38.noarch 148/221 Verifying : xz-devel-5.4.1-1.fc38.x86_64 149/221 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 150/221 Verifying : R-core-4.3.3-1.fc38.x86_64 151/221 Verifying : R-core-devel-4.3.3-1.fc38.x86_64 152/221 Verifying : R-devel-4.3.3-1.fc38.x86_64 153/221 Verifying : R-java-4.3.3-1.fc38.x86_64 154/221 Verifying : R-java-devel-4.3.3-1.fc38.x86_64 155/221 Verifying : R-littler-0.3.19-1.fc38.x86_64 156/221 Verifying : alsa-lib-1.2.11-2.fc38.x86_64 157/221 Verifying : annobin-docs-12.40-1.fc38.noarch 158/221 Verifying : annobin-plugin-gcc-12.40-1.fc38.x86_64 159/221 Verifying : avahi-libs-0.8-22.fc38.x86_64 160/221 Verifying : cairo-1.17.8-4.fc38.x86_64 161/221 Verifying : cmake-filesystem-3.27.7-1.fc38.x86_64 162/221 Verifying : cpp-13.2.1-7.fc38.x86_64 163/221 Verifying : cups-libs-1:2.4.7-13.fc38.x86_64 164/221 Verifying : dbus-libs-1:1.14.10-1.fc38.x86_64 165/221 Verifying : emacs-filesystem-1:29.3-1.fc38.noarch 166/221 Verifying : expat-2.6.0-1.fc38.x86_64 167/221 Verifying : flexiblas-3.4.2-1.fc38.x86_64 168/221 Verifying : flexiblas-devel-3.4.2-1.fc38.x86_64 169/221 Verifying : flexiblas-netlib-3.4.2-1.fc38.x86_64 170/221 Verifying : flexiblas-netlib64-3.4.2-1.fc38.x86_64 171/221 Verifying : flexiblas-openblas-openmp-3.4.2-1.fc38.x86_64 172/221 Verifying : flexiblas-openblas-openmp64-3.4.2-1.fc38.x86_64 173/221 Verifying : fontconfig-2.14.2-2.fc38.x86_64 174/221 Verifying : fontconfig-devel-2.14.2-2.fc38.x86_64 175/221 Verifying : gcc-13.2.1-7.fc38.x86_64 176/221 Verifying : gcc-c++-13.2.1-7.fc38.x86_64 177/221 Verifying : gcc-gfortran-13.2.1-7.fc38.x86_64 178/221 Verifying : gcc-plugin-annobin-13.2.1-7.fc38.x86_64 179/221 Verifying : glib2-2.76.6-1.fc38.x86_64 180/221 Verifying : glib2-devel-2.76.6-1.fc38.x86_64 181/221 Verifying : glibc-devel-2.37-19.fc38.x86_64 182/221 Verifying : glibc-headers-x86-2.37-19.fc38.noarch 183/221 Verifying : gnutls-3.8.5-1.fc38.x86_64 184/221 Verifying : google-noto-fonts-common-20230201-2.fc38.noarch 185/221 Verifying : google-noto-sans-vf-fonts-20230201-2.fc38.noarch 186/221 Verifying : java-17-openjdk-1:17.0.9.0.9-3.fc38.x86_64 187/221 Verifying : java-17-openjdk-devel-1:17.0.9.0.9-3.fc38.x86_64 188/221 Verifying : java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86 189/221 Verifying : kernel-headers-6.8.3-100.fc38.x86_64 190/221 Verifying : langpacks-core-font-en-3.0-32.fc38.noarch 191/221 Verifying : libRmath-4.3.3-1.fc38.x86_64 192/221 Verifying : libRmath-devel-4.3.3-1.fc38.x86_64 193/221 Verifying : libX11-1.8.9-1.fc38.x86_64 194/221 Verifying : libX11-common-1.8.9-1.fc38.noarch 195/221 Verifying : libX11-devel-1.8.9-1.fc38.x86_64 196/221 Verifying : libX11-xcb-1.8.9-1.fc38.x86_64 197/221 Verifying : libXft-2.3.8-2.fc38.x86_64 198/221 Verifying : libXft-devel-2.3.8-2.fc38.x86_64 199/221 Verifying : libXi-1.8.1-1.fc38.x86_64 200/221 Verifying : libgfortran-13.2.1-7.fc38.x86_64 201/221 Verifying : libquadmath-13.2.1-7.fc38.x86_64 202/221 Verifying : libquadmath-devel-13.2.1-7.fc38.x86_64 203/221 Verifying : libstdc++-devel-13.2.1-7.fc38.x86_64 204/221 Verifying : libtiff-4.4.0-8.fc38.x86_64 205/221 Verifying : libtirpc-devel-1.3.4-1.rc3.fc38.x86_64 206/221 Verifying : libwebp-1.3.2-2.fc38.x86_64 207/221 Verifying : libxcrypt-devel-4.4.36-1.fc38.x86_64 208/221 Verifying : libxml2-devel-2.10.4-1.fc38.x86_64 209/221 Verifying : make-1:4.4.1-1.fc38.x86_64 210/221 Verifying : nspr-4.35.0-17.fc38.x86_64 211/221 Verifying : nss-3.99.0-1.fc38.x86_64 212/221 Verifying : nss-softokn-3.99.0-1.fc38.x86_64 213/221 Verifying : nss-softokn-freebl-3.99.0-1.fc38.x86_64 214/221 Verifying : nss-sysinit-3.99.0-1.fc38.x86_64 215/221 Verifying : nss-util-3.99.0-1.fc38.x86_64 216/221 Verifying : python-pip-wheel-22.3.1-3.fc38.noarch 217/221 Verifying : python3-3.11.8-2.fc38.x86_64 218/221 Verifying : python3-libs-3.11.8-2.fc38.x86_64 219/221 Verifying : tzdata-java-2024a-1.fc38.noarch 220/221 Verifying : xdg-utils-1.1.3-15.fc38.noarch 221/221 Installed products updated. Installed: R-CRAN-BH-1.84.0.0-1.fc38.copr6880886.noarch R-CRAN-DDD-5.2.2-1.fc38.copr6665594.x86_64 R-CRAN-DEoptim-2.2.8-1.fc38.copr5812626.x86_64 R-CRAN-MASS-7.3.60.0.1-1.fc38.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc38.copr6886765.x86_64 R-CRAN-R6-2.5.1-1.fc38.copr5812135.noarch R-CRAN-RColorBrewer-1.1.3-1.fc38.copr5812145.noarch R-CRAN-RSpectra-0.16.1-1.fc38.copr6664807.x86_64 R-CRAN-Rcpp-1.0.12-1.fc38.copr6877523.x86_64 R-CRAN-RcppParallel-5.1.7-1.fc38.copr5812289.x86_64 R-CRAN-SparseM-1.81-1.fc38.copr5812258.x86_64 R-CRAN-ape-5.8-1.fc38.copr7307322.x86_64 R-CRAN-cli-3.6.2-1.fc38.copr6742501.x86_64 R-CRAN-clusterGeneration-1.3.8-1.fc38.copr6310452.noarch R-CRAN-coda-0.19.4.1-1.fc38.copr6978195.noarch R-CRAN-codetools-0.2.20-1.fc38.copr7307081.noarch R-CRAN-colorspace-2.1.0-1.fc38.copr5812150.x86_64 R-CRAN-combinat-0.0.8-3.fc38.copr5812291.noarch R-CRAN-deSolve-1.40-1.fc38.copr6700948.x86_64 R-CRAN-digest-0.6.35-1.fc38.copr7305174.x86_64 R-CRAN-doParallel-1.0.17-1.fc38.copr5817836.noarch R-CRAN-expm-0.999.9-1.fc38.copr6886803.x86_64 R-CRAN-fansi-1.0.6-1.fc38.copr6735917.x86_64 R-CRAN-farver-2.1.1-1.fc38.copr5812193.x86_64 R-CRAN-fastmatch-1.1.4-1.fc38.copr6317709.x86_64 R-CRAN-foreach-1.5.2-1.fc38.copr5815655.noarch R-CRAN-geiger-2.0.11-1.fc38.copr5826639.x86_64 R-CRAN-generics-0.1.3-1.fc38.copr5812201.noarch R-CRAN-ggplot2-3.5.1-1.fc38.copr7342639.noarch R-CRAN-glue-1.7.0-1.fc38.copr6877494.x86_64 R-CRAN-gtable-0.3.5-1.fc38.copr7338149.noarch R-CRAN-igraph-2.0.3-1.fc38.copr7306786.x86_64 R-CRAN-isoband-0.2.7-1.fc38.copr5813294.x86_64 R-CRAN-iterators-1.0.14-1.fc38.copr5812211.noarch R-CRAN-labeling-0.4.3-1.fc38.copr6354313.noarch R-CRAN-lattice-0.22.6-1.fc38.copr7307082.x86_64 R-CRAN-lifecycle-1.0.4-1.fc38.copr6614518.noarch R-CRAN-magrittr-2.0.3-1.fc38.copr5812133.x86_64 R-CRAN-maps-3.4.2-1.fc38.copr6761068.x86_64 R-CRAN-mgcv-1.9.1-1.fc38.copr6775870.x86_64 R-CRAN-mnormt-2.1.1-1.fc38.copr5814735.x86_64 R-CRAN-munsell-0.5.1-1.fc38.copr7306785.noarch R-CRAN-mvtnorm-1.2.4-1.fc38.copr6700966.x86_64 R-CRAN-ncbit-2013.03.29.1-1.fc38.copr5812647.noarch R-CRAN-nlme-3.1.164-1.fc38.copr6700968.x86_64 R-CRAN-nloptr-2.0.3-1.fc38.copr5831161.x86_64 R-CRAN-numDeriv-2016.8.1.1-3.fc38.copr5812231.noarch R-CRAN-optimParallel-1.0.2-1.fc38.copr5814069.noarch R-CRAN-phangorn-2.11.1-1.fc38.copr6665417.x86_64 R-CRAN-phytools-2.1.1-1.fc38.copr6877519.noarch R-CRAN-pillar-1.9.0-1.fc38.copr5819458.noarch R-CRAN-pkgconfig-2.0.3-3.fc38.copr5812134.noarch R-CRAN-quadprog-1.5.8-3.fc38.copr5812307.x86_64 R-CRAN-rlang-1.1.3-1.fc38.copr6880930.x86_64 R-CRAN-scales-1.3.0-1.fc38.copr6704012.noarch R-CRAN-scatterplot3d-0.3.44-1.fc38.copr5891701.noarch R-CRAN-subplex-1.8-1.fc38.copr5812646.x86_64 R-CRAN-tibble-3.2.1-1.fc38.copr5821162.x86_64 R-CRAN-treestats-1.0.5-1.fc38.copr6974899.x86_64 R-CRAN-utf8-1.2.4-1.fc38.copr6555966.x86_64 R-CRAN-vctrs-0.6.5-1.fc38.copr6715464.x86_64 R-CRAN-viridisLite-0.4.2-1.fc38.copr5868842.noarch R-CRAN-withr-3.0.0-1.fc38.copr6911503.noarch R-core-4.3.3-1.fc38.x86_64 R-core-devel-4.3.3-1.fc38.x86_64 R-devel-4.3.3-1.fc38.x86_64 R-java-4.3.3-1.fc38.x86_64 R-java-devel-4.3.3-1.fc38.x86_64 R-littler-0.3.19-1.fc38.x86_64 R-rpm-macros-1.2.1-6.fc38.noarch alsa-lib-1.2.11-2.fc38.x86_64 annobin-docs-12.40-1.fc38.noarch annobin-plugin-gcc-12.40-1.fc38.x86_64 avahi-libs-0.8-22.fc38.x86_64 brotli-1.0.9-11.fc38.x86_64 brotli-devel-1.0.9-11.fc38.x86_64 bzip2-devel-1.0.8-13.fc38.x86_64 cairo-1.17.8-4.fc38.x86_64 cmake-filesystem-3.27.7-1.fc38.x86_64 copy-jdk-configs-4.1-2.fc38.noarch cpp-13.2.1-7.fc38.x86_64 crypto-policies-scripts-20230301-1.gita12f7b2.fc38.noarch cups-libs-1:2.4.7-13.fc38.x86_64 dbus-libs-1:1.14.10-1.fc38.x86_64 desktop-file-utils-0.26-8.fc38.x86_64 emacs-filesystem-1:29.3-1.fc38.noarch expat-2.6.0-1.fc38.x86_64 flexiblas-3.4.2-1.fc38.x86_64 flexiblas-devel-3.4.2-1.fc38.x86_64 flexiblas-netlib-3.4.2-1.fc38.x86_64 flexiblas-netlib64-3.4.2-1.fc38.x86_64 flexiblas-openblas-openmp-3.4.2-1.fc38.x86_64 flexiblas-openblas-openmp64-3.4.2-1.fc38.x86_64 fontconfig-2.14.2-2.fc38.x86_64 fontconfig-devel-2.14.2-2.fc38.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.0-2.fc38.x86_64 freetype-devel-2.13.0-2.fc38.x86_64 fribidi-1.0.12-3.fc38.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.2.1-7.fc38.x86_64 gcc-c++-13.2.1-7.fc38.x86_64 gcc-gfortran-13.2.1-7.fc38.x86_64 gcc-plugin-annobin-13.2.1-7.fc38.x86_64 gettext-0.21.1-2.fc38.x86_64 gettext-envsubst-0.21.1-2.fc38.x86_64 gettext-libs-0.21.1-2.fc38.x86_64 gettext-runtime-0.21.1-2.fc38.x86_64 glib2-2.76.6-1.fc38.x86_64 glib2-devel-2.76.6-1.fc38.x86_64 glibc-devel-2.37-19.fc38.x86_64 glibc-headers-x86-2.37-19.fc38.noarch glpk-5.0-6.fc38.x86_64 gnutls-3.8.5-1.fc38.x86_64 google-noto-fonts-common-20230201-2.fc38.noarch google-noto-sans-vf-fonts-20230201-2.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 graphite2-devel-1.3.14-11.fc38.x86_64 guile22-2.2.7-7.fc38.x86_64 harfbuzz-7.1.0-1.fc38.x86_64 harfbuzz-devel-7.1.0-1.fc38.x86_64 harfbuzz-icu-7.1.0-1.fc38.x86_64 java-17-openjdk-1:17.0.9.0.9-3.fc38.x86_64 java-17-openjdk-devel-1:17.0.9.0.9-3.fc38.x86_64 java-17-openjdk-headless-1:17.0.9.0.9-3.fc38.x86_64 javapackages-filesystem-6.1.0-7.fc38.noarch jbigkit-libs-2.1-25.fc38.x86_64 kernel-headers-6.8.3-100.fc38.x86_64 langpacks-core-font-en-3.0-32.fc38.noarch libICE-1.0.10-10.fc38.x86_64 libRmath-4.3.3-1.fc38.x86_64 libRmath-devel-4.3.3-1.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libX11-1.8.9-1.fc38.x86_64 libX11-common-1.8.9-1.fc38.noarch libX11-devel-1.8.9-1.fc38.x86_64 libX11-xcb-1.8.9-1.fc38.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXcomposite-0.4.5-9.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXft-2.3.8-2.fc38.x86_64 libXft-devel-2.3.8-2.fc38.x86_64 libXi-1.8.1-1.fc38.x86_64 libXmu-1.1.4-2.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXrender-devel-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libXtst-1.2.4-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-devel-2.38.1-4.fc38.x86_64 libdatrie-0.2.13-5.fc38.x86_64 libffi-devel-3.4.4-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.2.1-7.fc38.x86_64 libicu-72.1-2.fc38.x86_64 libicu-devel-72.1-2.fc38.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 liblerc-4.0.0-3.fc38.x86_64 libmount-devel-2.38.1-4.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libpng-devel-2:1.6.37-14.fc38.x86_64 libquadmath-13.2.1-7.fc38.x86_64 libquadmath-devel-13.2.1-7.fc38.x86_64 libselinux-devel-3.5-1.fc38.x86_64 libsepol-devel-3.5-1.fc38.x86_64 libstdc++-devel-13.2.1-7.fc38.x86_64 libthai-0.1.29-4.fc38.x86_64 libtiff-4.4.0-8.fc38.x86_64 libtirpc-devel-1.3.4-1.rc3.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libwebp-1.3.2-2.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.36-1.fc38.x86_64 libxml2-devel-2.10.4-1.fc38.x86_64 lksctp-tools-1.0.19-3.fc38.x86_64 lua-5.4.4-9.fc38.x86_64 lua-posix-35.1-5.fc38.x86_64 make-1:4.4.1-1.fc38.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 nettle-3.8-3.fc38.x86_64 nspr-4.35.0-17.fc38.x86_64 nss-3.99.0-1.fc38.x86_64 nss-softokn-3.99.0-1.fc38.x86_64 nss-softokn-freebl-3.99.0-1.fc38.x86_64 nss-sysinit-3.99.0-1.fc38.x86_64 nss-util-3.99.0-1.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openblas-openmp64-0.3.21-4.fc38.x86_64 pango-1.50.14-1.fc38.x86_64 pcre2-devel-10.42-1.fc38.1.x86_64 pcre2-utf16-10.42-1.fc38.1.x86_64 pcre2-utf32-10.42-1.fc38.1.x86_64 pixman-0.42.2-1.fc38.x86_64 python-pip-wheel-22.3.1-3.fc38.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.8-2.fc38.x86_64 python3-libs-3.11.8-2.fc38.x86_64 suitesparse-5.13.0-2.fc38.x86_64 sysprof-capture-devel-3.48.0-1.fc38.x86_64 tbb-2020.3-16.fc38.x86_64 tbb-devel-2020.3-16.fc38.x86_64 tcl-1:8.6.12-4.fc38.x86_64 tcl-devel-1:8.6.12-4.fc38.x86_64 tk-1:8.6.12-4.fc38.x86_64 tk-devel-1:8.6.12-4.fc38.x86_64 tre-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 tre-common-0.8.0-39.20140228gitc2f5d13.fc38.noarch tre-devel-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 ttmkfdir-3.0.9-67.fc38.x86_64 tzdata-java-2024a-1.fc38.noarch xdg-utils-1.1.3-15.fc38.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-Type1-7.5-35.fc38.noarch xorg-x11-proto-devel-2022.2-3.fc38.noarch xz-devel-5.4.1-1.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm Start: rpmbuild R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Porklw + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf secsse + /usr/bin/mkdir -p secsse + cd secsse + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/secsse_3.1.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d secsse/src ']' + find secsse/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d secsse/src ']' + find secsse/src/Makevars secsse/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.W3XCAZ + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd secsse + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.blko4H + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd secsse + mkdir -p /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64/usr/local/lib/R/library secsse * installing *source* package 'secsse' ... ** package 'secsse' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)' using C++17 g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/BH/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/BH/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c secsse_eval.cpp -o secsse_eval.o In file included from /usr/local/lib/R/library/RcppParallel/include/RcppParallel/TBB.h:10, from /usr/local/lib/R/library/RcppParallel/include/RcppParallel.h:21, from secsse_eval.cpp:12: /usr/include/tbb/tbb.h:21:154: note: '#pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.' 21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ In file included from /usr/local/lib/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /usr/local/lib/R/library/BH/include/boost/mpl/arg.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mpl/placeholders.hpp:24, from /usr/local/lib/R/library/BH/include/boost/mpl/apply.hpp:24, from /usr/local/lib/R/library/BH/include/boost/serialization/array_optimization.hpp:18, from /usr/local/lib/R/library/BH/include/boost/serialization/array_wrapper.hpp:21, from /usr/local/lib/R/library/BH/include/boost/serialization/array.hpp:26, from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/storage.hpp:22, from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/vector.hpp:21, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint.hpp:25, from odeint.h:12, from secsse_loglik.h:13, from secsse_eval.cpp:13: /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/traits.hpp:21, from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/storage.hpp:27: /usr/local/lib/R/library/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from secsse_eval.cpp:9: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/concept/assert.hpp:35, from /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:19, from /usr/local/lib/R/library/BH/include/boost/range/size_type.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range/size.hpp:21, from /usr/local/lib/R/library/BH/include/boost/range/functions.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range.hpp:18, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/resize.hpp:22, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:31: /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_)>' /usr/local/lib/R/library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:152:13: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:152:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ > >)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ > >)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ > >)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:281:9: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:281:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: required from 'typename boost::range_size::type boost::size(const SinglePassRange&) [with SinglePassRange = std::vector; typename range_size::type = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/same_size.hpp:43:29: required from 'static bool boost::numeric::odeint::same_size_impl_sfinae::same_size(const State1&, const State2&) [with State1 = std::vector; State2 = std::vector; Enabler = void]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/same_size.hpp:55:67: required from 'static bool boost::numeric::odeint::same_size_impl::same_size(const State1&, const State2&) [with State1 = std::vector; State2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/same_size.hpp:64:56: required from 'bool boost::numeric::odeint::same_size(const State1&, const State2&) [with State1 = std::vector; State2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/resizer.hpp:33:20: required from 'bool boost::numeric::odeint::adjust_size_by_resizeability(ResizeWrappedState&, const State&, boost::true_type) [with ResizeWrappedState = state_wrapper, void>; State = std::vector; boost::true_type = boost::integral_constant]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:495:44: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/range/algorithm/equal.hpp:174:13: required from 'OutputIterator boost::range::copy(const SinglePassRange&, OutputIterator) [with SinglePassRange = std::vector; OutputIterator = __gnu_cxx::__normal_iterator >]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:37:27: required from 'void boost::numeric::odeint::detail::do_copying(const Container1&, Container2&, mpl_::true_) [with Container1 = std::vector; Container2 = std::vector; mpl_::true_ = mpl_::bool_]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:60:27: required from 'static void boost::numeric::odeint::copy_impl_sfinae::copy(const Container1&, Container2&) [with Container1 = std::vector; Container2 = std::vector; Enabler = void]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:70:58: required from 'static void boost::numeric::odeint::copy_impl::copy(const Container1&, Container2&) [with Container1 = std::vector; Container2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:78:47: required from 'void boost::numeric::odeint::copy(const Container1&, Container2&) [with Container1 = std::vector; Container2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:344:41: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 24 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = secsse::ode_standard*; std::string = std::__cxx11::basic_string]' secsse_loglik.h:197:27: required from 'void secsse::Integrator::do_integrate(std::vector&, double, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:181:7: required from 'void secsse::Integrator::operator()(std::vector&, double, double) const [with ODE = secsse::ode_standard]' secsse_loglik.h:242:15: required from 'secsse::calc_ll_res secsse::calc_ll(const INTEGRATOR&, inodes_t&, std::vector >&) [with INTEGRATOR = Integrator >; inodes_t = std::vector >]' secsse_eval.cpp:41:12: required from 'Rcpp::List secsse::eval(std::unique_ptr<_Tp>, const Rcpp::IntegerVector&, const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const std::string&, double, double, size_t) [with ODE = ode_standard; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::NumericMatrix = Rcpp::Matrix<14>; std::string = std::__cxx11::basic_string; size_t = long unsigned int]' secsse_eval.cpp:113:13: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/BH/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c secsse_loglik.cpp -o secsse_loglik.o In file included from /usr/local/lib/R/library/RcppParallel/include/RcppParallel/TBB.h:10, from /usr/local/lib/R/library/RcppParallel/include/RcppParallel.h:21, from secsse_loglik.cpp:13: /usr/include/tbb/tbb.h:21:154: note: '#pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.' 21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ In file included from /usr/local/lib/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /usr/local/lib/R/library/BH/include/boost/mpl/arg.hpp:25, from /usr/local/lib/R/library/BH/include/boost/mpl/placeholders.hpp:24, from /usr/local/lib/R/library/BH/include/boost/mpl/apply.hpp:24, from /usr/local/lib/R/library/BH/include/boost/serialization/array_optimization.hpp:18, from /usr/local/lib/R/library/BH/include/boost/serialization/array_wrapper.hpp:21, from /usr/local/lib/R/library/BH/include/boost/serialization/array.hpp:26, from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/storage.hpp:22, from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/vector.hpp:21, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint.hpp:25, from odeint.h:12, from secsse_loglik.h:13, from secsse_loglik.cpp:14: /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /usr/local/lib/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/traits.hpp:21, from /usr/local/lib/R/library/BH/include/boost/numeric/ublas/storage.hpp:27: /usr/local/lib/R/library/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 111 | public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from secsse_loglik.cpp:9: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 149 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /usr/local/lib/R/library/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 204 | public std::iterator { | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /usr/local/lib/R/library/BH/include/boost/concept/assert.hpp:35, from /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:19, from /usr/local/lib/R/library/BH/include/boost/range/size_type.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range/size.hpp:21, from /usr/local/lib/R/library/BH/include/boost/range/functions.hpp:20, from /usr/local/lib/R/library/BH/include/boost/range.hpp:18, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/resize.hpp:22, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/state_wrapper.hpp:26, from /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:33: /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:31: /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_)>' /usr/local/lib/R/library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/iterator/iterator_concepts.hpp:114:7: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:152:13: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:152:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ > >)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ > >)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:278:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ > >)>' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:281:9: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:281:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/range/size.hpp:62:9: required from 'typename boost::range_size::type boost::size(const SinglePassRange&) [with SinglePassRange = std::vector; typename range_size::type = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/same_size.hpp:43:29: required from 'static bool boost::numeric::odeint::same_size_impl_sfinae::same_size(const State1&, const State2&) [with State1 = std::vector; State2 = std::vector; Enabler = void]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/same_size.hpp:55:67: required from 'static bool boost::numeric::odeint::same_size_impl::same_size(const State1&, const State2&) [with State1 = std::vector; State2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/same_size.hpp:64:56: required from 'bool boost::numeric::odeint::same_size(const State1&, const State2&) [with State1 = std::vector; State2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/resizer.hpp:33:20: required from 'bool boost::numeric::odeint::adjust_size_by_resizeability(ResizeWrappedState&, const State&, boost::true_type) [with ResizeWrappedState = state_wrapper, void>; State = std::vector; boost::true_type = boost::integral_constant]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:495:44: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]': /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: required from 'struct boost::concepts::requirement_ >)>' /usr/local/lib/R/library/BH/include/boost/range/algorithm/equal.hpp:174:13: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:5: note: in a call to non-static member function 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]' 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ^ /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp: In instantiation of 'static void boost::concepts::requirement::failed() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/range/algorithm/equal.hpp:174:13: required from 'OutputIterator boost::range::copy(const SinglePassRange&, OutputIterator) [with SinglePassRange = std::vector; OutputIterator = __gnu_cxx::__normal_iterator >]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:37:27: required from 'void boost::numeric::odeint::detail::do_copying(const Container1&, Container2&, mpl_::true_) [with Container1 = std::vector; Container2 = std::vector; mpl_::true_ = mpl_::bool_]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:60:27: required from 'static void boost::numeric::odeint::copy_impl_sfinae::copy(const Container1&, Container2&) [with Container1 = std::vector; Container2 = std::vector; Enabler = void]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:70:58: required from 'static void boost::numeric::odeint::copy_impl::copy(const Container1&, Container2&) [with Container1 = std::vector; Container2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/util/copy.hpp:78:47: required from 'void boost::numeric::odeint::copy(const Container1&, Container2&) [with Container1 = std::vector; Container2 = std::vector]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/stepper/controlled_runge_kutta.hpp:344:41: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: warning: 'this' pointer is null [-Wnonnull] 50 | static void failed() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: required from 'struct boost::Convertible' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:208:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 208 | BOOST_CONCEPT_USAGE(Convertible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: required from 'struct boost::CopyConstructible<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:125:16: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::CopyConstructible::~CopyConstructible() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:167:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 167 | BOOST_CONCEPT_USAGE(CopyConstructible) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: required from 'struct boost::range_detail::IncrementableIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::IncrementableIteratorConcept::~IncrementableIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:136:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 136 | BOOST_CONCEPT_USAGE(IncrementableIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: required from 'struct boost::EqualityComparable<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:147:16: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::EqualityComparable::~EqualityComparable() [with TT = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/concept_check.hpp:233:5: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 233 | BOOST_CONCEPT_USAGE(EqualityComparable) { | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: required from 'struct boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept<__gnu_cxx::__normal_iterator > >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::range_detail::SinglePassIteratorConcept::~SinglePassIteratorConcept() [with Iterator = __gnu_cxx::__normal_iterator >]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:158:13: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 158 | BOOST_CONCEPT_USAGE(SinglePassIteratorConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp: In instantiation of 'boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::SinglePassRangeConcept >]': /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:50:47: required from 'static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]' /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: required from 'struct boost::SinglePassRangeConcept >' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of 'template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:42:5: required from 'const bool boost::concepts::not_satisfied > >::value' /usr/local/lib/R/library/BH/include/boost/concept/detail/has_constraints.hpp:45:51: required from 'struct boost::concepts::not_satisfied > >' /usr/local/lib/R/library/BH/include/boost/concept/detail/general.hpp:72:8: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:42:38: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time, Observer) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; Observer = null_observer; size_t = long unsigned int]' /usr/local/lib/R/library/BH/include/boost/numeric/odeint/integrate/integrate_adaptive.hpp:83:30: required from 'size_t boost::numeric::odeint::integrate_adaptive(Stepper, System, State&, Time, Time, Time) [with Stepper = controlled_runge_kutta, double, std::vector, double, range_algebra, default_operations, initially_resizer>, default_error_checker, default_step_adjuster, initially_resizer, explicit_error_stepper_tag>; System = std::reference_wrapper >; State = std::vector; Time = double; size_t = long unsigned int]' odeint.h:48:28: required from 'void odeintcpp::integrate(STEPPER&&, ODE&, STATE*, double, double, double) [with STEPPER = boost::numeric::odeint::controlled_runge_kutta, double, std::vector, double, boost::numeric::odeint::range_algebra, boost::numeric::odeint::default_operations, boost::numeric::odeint::initially_resizer>, boost::numeric::odeint::default_error_checker, boost::numeric::odeint::default_step_adjuster, boost::numeric::odeint::initially_resizer, boost::numeric::odeint::explicit_error_stepper_tag>; ODE = secsse::ode_standard; STATE = std::vector]' odeint.h:77:16: required from 'void odeintcpp::integrate(const std::string&, ODE, STATE*, double, double, double, double, double) [with STATE = std::vector; ODE = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:76:25: required from 'Rcpp::NumericVector secsse::ct_condition(std::unique_ptr<_Tp>, const Rcpp::NumericVector&, double, const std::string&, double, double) [with ODE = ode_standard; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; std::string = std::__cxx11::basic_string]' secsse_loglik.cpp:136:24: required from here /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:20:48: warning: 'this' pointer is null [-Wnonnull] 20 | ~usage_requirements() { ((Model*)0)->~Model(); } | ~~~~~~~~~~~~~~~~~~~^~ /usr/local/lib/R/library/BH/include/boost/concept/usage.hpp:37:7: note: in a call to non-static member function 'boost::SinglePassRangeConcept::~SinglePassRangeConcept() [with T = const std::vector]' 37 | ~model() | ^ /usr/local/lib/R/library/BH/include/boost/range/concepts.hpp:284:9: note: in expansion of macro 'BOOST_CONCEPT_USAGE' 284 | BOOST_CONCEPT_USAGE(SinglePassRangeConcept) | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I'/usr/local/lib/R/library/BH/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c secsse_sim.cpp -o secsse_sim.o In file included from secsse_sim.cpp:10: secsse_sim2.h: In member function 'void secsse_sim::run()': secsse_sim2.h:273:47: warning: comparison of integer expressions of different signedness: 'std::array::value_type' {aka 'int'} and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 273 | if (track_crowns[0] + track_crowns[1] >= max_spec) { g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o secsse.so RcppExports.o secsse_eval.o secsse_loglik.o secsse_sim.o -L/usr/lib64 -Wl,-rpath,/usr/lib64 -ltbb -ltbbmalloc -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64/usr/local/lib/R/library/00LOCK-secsse/00new/secsse/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'secsse' finding HTML links ... done cla_id_paramPos html cla_secsse_loglik html cla_secsse_ml html finding level-2 HTML links ... done cla_secsse_ml_func_def_pars html create_default_lambda_transition_matrix html create_default_shift_matrix html create_lambda_list html create_mu_vector html create_q_matrix html default_params_doc html event_times html example_phy_GeoSSE html expand_q_matrix html extract_par_vals html fill_in html id_paramPos html phylo_vignette html plot_state_exact html prepare_full_lambdas html q_doubletrans html secsse-package html secsse_loglik html secsse_loglik_eval html secsse_ml html secsse_ml_func_def_pars html secsse_sim html sortingtraits html traits html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (secsse) + test -d secsse/src + cd secsse/src + rm -f RcppExports.o secsse_eval.o secsse_loglik.o secsse_sim.o secsse.so + rm -f /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 3.1.0-1.fc38.copr7395266 --unique-debug-suffix -3.1.0-1.fc38.copr7395266.x86_64 --unique-debug-src-base R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/secsse find-debuginfo: starting Extracting debug info from 1 files /usr/bin/gdb.minimal DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 119 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 Provides: R-CRAN-secsse = 3.1.0-1.fc38.copr7395266 R-CRAN-secsse(x86-64) = 3.1.0-1.fc38.copr7395266 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtbb.so.2()(64bit) rtld(GNU_HASH) Processing files: R-CRAN-secsse-debugsource-3.1.0-1.fc38.copr7395266.x86_64 Provides: R-CRAN-secsse-debugsource = 3.1.0-1.fc38.copr7395266 R-CRAN-secsse-debugsource(x86-64) = 3.1.0-1.fc38.copr7395266 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-secsse-debuginfo-3.1.0-1.fc38.copr7395266.x86_64 Provides: R-CRAN-secsse-debuginfo = 3.1.0-1.fc38.copr7395266 R-CRAN-secsse-debuginfo(x86-64) = 3.1.0-1.fc38.copr7395266 debuginfo(build-id) = d5a68af3976c0693cfabfa4ba974ef63228a23ee Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-secsse-debugsource(x86-64) = 3.1.0-1.fc38.copr7395266 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-secsse-debugsource-3.1.0-1.fc38.copr7395266.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-secsse-debuginfo-3.1.0-1.fc38.copr7395266.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ITLCqh + umask 022 + cd /builddir/build/BUILD + cd secsse + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.DExYpH + umask 022 + cd /builddir/build/BUILD + rm -rf secsse secsse.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm Finish: build phase for R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1714527263.837411/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1714527263.837411/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1714527263.837411/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-secsse-3.1.0-1.fc38.copr7395266.src.rpm) Config(child) 1 minutes 1 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-secsse", "epoch": null, "version": "3.1.0", "release": "1.fc38.copr7395266", "arch": "x86_64" }, { "name": "R-CRAN-secsse-debuginfo", "epoch": null, "version": "3.1.0", "release": "1.fc38.copr7395266", "arch": "x86_64" }, { "name": "R-CRAN-secsse", "epoch": null, "version": "3.1.0", "release": "1.fc38.copr7395266", "arch": "src" }, { "name": "R-CRAN-secsse-debugsource", "epoch": null, "version": "3.1.0", "release": "1.fc38.copr7395266", "arch": "x86_64" } ] } RPMResults finished