%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  healthdb
%global packver   0.2.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.0
Release:          1%{?dist}%{?buildtag}
Summary:          Working with Healthcare Databases

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-dbplyr >= 2.5.0
BuildRequires:    R-CRAN-stringr >= 1.5.0
BuildRequires:    R-CRAN-dplyr >= 1.1.0
BuildRequires:    R-CRAN-clock 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-dbplyr >= 2.5.0
Requires:         R-CRAN-stringr >= 1.5.0
Requires:         R-CRAN-dplyr >= 1.1.0
Requires:         R-CRAN-clock 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-tidyr 

%description
A system for identifying diseases or events from healthcare databases and
preparing data for epidemiological studies. It includes capabilities not
supported by 'SQL', such as matching strings by 'stringr' style regular
expressions, and can compute comorbidity scores (Quan et al. (2005)
<doi:10.1097/01.mlr.0000182534.19832.83>) directly on a database server.
The implementation is based on 'dbplyr' with full 'tidyverse'
compatibility.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}