SeqMotifOperator {rPDBapi} | R Documentation |
Constructs a SeqMotifOperator object for use in sequence motif searches within the RCSB PDB. This operator allows specifying a pattern, sequence type, and pattern type.
SeqMotifOperator(pattern, sequence_type, pattern_type)
pattern |
A string representing the motif pattern to search for. |
sequence_type |
A string indicating the type of sequence ('DNA', 'RNA', or 'PROTEIN'). |
pattern_type |
A string indicating the type of pattern ('SIMPLE', 'PROSITE', or 'REGEX'). |
An object of class 'SeqMotifOperator' representing the sequence motif operator.
seq_motif_operator <- SeqMotifOperator(pattern = "A[TU]G",
sequence_type = "DNA",
pattern_type = "REGEX")
seq_motif_operator