Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-Phase12Compare.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1682139642.903772/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7faedfec7050>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.abbhv_tv:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.abbhv_tv:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'aa5b77cadb804a4bbd07c5519653d74c', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1682139642.903772/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.abbhv_tv:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-Phase12Compare.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.src.rpm
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-Phase12Compare.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1682139642.903772/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7faedfec7050>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.abbhv_tv:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.abbhv_tv:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b2989c1a287e49898d4cf929229f5dc2', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1682139642.903772/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.abbhv_tv:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-Phase12Compare.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.yNq2do
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf Phase12Compare
+ /usr/bin/mkdir -p Phase12Compare
+ cd Phase12Compare
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Phase12Compare_1.5.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';'
+ '[' -d Phase12Compare/src ']'
+ find Phase12Compare/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LXqhcB
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Phase12Compare
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fU07mn
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64
++ dirname /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Phase12Compare
+ mkdir -p /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64/usr/local/lib/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64/usr/local/lib/R/library Phase12Compare
* installing *source* package 'Phase12Compare' ...
** package 'Phase12Compare' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (GCC) 13.0.1 20230419 (Red Hat 13.0.1-0)'
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include    -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -flto -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include    -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -flto -c SPSOCODE.cpp -o SPSOCODE.o
In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26,
                 from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
                 from SPSOCODE.cpp:3:
/usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
  338 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
/usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
  343 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
/usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details'
  346 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
SPSOCODE.cpp: In function 'arma::mat MATMULT(arma::mat, arma::mat)':
SPSOCODE.cpp:54:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   54 |   for(j = 0 ;j<X.n_rows;j++){
      |              ~^~~~~~~~~
SPSOCODE.cpp:55:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   55 |     for(k=0;k<PROD.n_cols;k++){
      |             ~^~~~~~~~~~~~
SPSOCODE.cpp:57:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   57 |       for(m=0;m<X.n_cols;m++){
      |               ~^~~~~~~~~
SPSOCODE.cpp: In function 'arma::vec GETBIN(arma::vec)':
SPSOCODE.cpp:98:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   98 |   for(j=1;j<PVEC.n_rows;j++){
      |           ~^~~~~~~~~~~~
SPSOCODE.cpp: In function 'int ReturnOpt(arma::vec, arma::vec)':
SPSOCODE.cpp:243:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  243 |   for(j=0;j<DoseTried1.n_rows;j++){
      |           ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp: In function 'double GetMin(arma::vec)':
SPSOCODE.cpp:387:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  387 |   for(j=1;j<DESIRE.n_rows;j++){
      |           ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function 'int GetOrderSum(arma::vec)':
SPSOCODE.cpp:547:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  547 |   for(k=1;k<Y.n_rows;k++){
      |           ~^~~~~~~~~
SPSOCODE.cpp: In function 'arma::vec GlobalPropose(arma::vec, int)':
SPSOCODE.cpp:601:14: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  601 |     for(k=1;k<(MUPROP.n_rows-1);k++){
      |             ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:614:14: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  614 |     for(k=1;k<(MUPROP.n_rows-1);k++){
      |             ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:628:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  628 |     for(k=0;k<MUPROP.n_rows;k++){
      |             ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function 'double Like(arma::vec, arma::vec, arma::vec, arma::vec, double, int)':
SPSOCODE.cpp:700:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  700 |   for(i=0;i<YE.n_rows;i++){
      |           ~^~~~~~~~~~
SPSOCODE.cpp:676:7: warning: unused variable 'm' [-Wunused-variable]
  676 |   int m=0;
      |       ^
SPSOCODE.cpp: In function 'int GetDose1(arma::vec)':
SPSOCODE.cpp:775:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  775 |   for(j=0;j<DESIRE.n_rows;j++){
      |           ~^~~~~~~~~~~~~~
SPSOCODE.cpp:836:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  836 |         if(which1==(cumprob.n_rows-1)){
      |            ~~~~~~^~~~~~~~~~~~~~~~~~~~
SPSOCODE.cpp: In function 'int GetDose2(arma::vec, arma::vec)':
SPSOCODE.cpp:890:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  890 |   for(j=0;j<DoseTried1.n_rows;j++){
      |           ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:901:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  901 |   for(j=0;j<Desire.n_rows;j++){
      |           ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function 'int GetDose3(arma::vec, arma::vec)':
SPSOCODE.cpp:942:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  942 |   for(j=0;j<DoseTried1.n_rows;j++){
      |           ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:953:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  953 |   for(j=0;j<Desire.n_rows;j++){
      |           ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function 'int RandomDoseUT(arma::vec, arma::vec)':
SPSOCODE.cpp:989:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  989 |   for(j=0;j<DoseTried1.n_rows;j++){
      |           ~^~~~~~~~~~~~~~~~~~
SPSOCODE.cpp:1000:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1000 |   for(j=0;j<Desire.n_rows;j++){
      |           ~^~~~~~~~~~~~~~
SPSOCODE.cpp: In function 'Rcpp::List RunAdaptiveEffToxTrialCORR(int, arma::vec, arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, int, int, double, int, arma::mat)':
SPSOCODE.cpp:1365:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1365 |           for(j=0;j<Dose.n_rows;j++){
      |                   ~^~~~~~~~~~~~
SPSOCODE.cpp:1410:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1410 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:1411:26: warning: comparison of integer expressions of different signedness: 'arma::enable_if2<true, unsigned int>::result' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 1411 |         if(sum(Doses2==j)>=cohort){
      |            ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:1434:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1434 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:1454:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1454 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:1536:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1536 |           for(j=0;j<Dose.n_rows;j++){
      |                   ~^~~~~~~~~~~~
SPSOCODE.cpp:1702:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1702 |           for(j=0;j<Dose.n_rows;j++){
      |                   ~^~~~~~~~~~~~
SPSOCODE.cpp:1749:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1749 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:1750:26: warning: comparison of integer expressions of different signedness: 'arma::enable_if2<true, unsigned int>::result' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 1750 |         if(sum(Doses2==j)>=cohort){
      |            ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:1773:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1773 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:1793:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1793 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:1823:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1823 |         for(j=0;j<Dose.n_rows;j++){
      |                 ~^~~~~~~~~~~~
SPSOCODE.cpp:1858:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1858 |     for(j=0;j<Dose.n_rows;j++){
      |             ~^~~~~~~~~~~~
SPSOCODE.cpp:1080:10: warning: unused variable 'p' [-Wunused-variable]
 1080 |   double p=0;
      |          ^
SPSOCODE.cpp:1081:10: warning: unused variable 'pu' [-Wunused-variable]
 1081 |   double pu=0;
      |          ^~
SPSOCODE.cpp:1082:10: warning: unused variable 'pl' [-Wunused-variable]
 1082 |   double pl=0;
      |          ^~
SPSOCODE.cpp:1083:10: warning: unused variable 'tol' [-Wunused-variable]
 1083 |   double tol=.005;
      |          ^~~
SPSOCODE.cpp:1109:7: warning: unused variable 'Count' [-Wunused-variable]
 1109 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:1119:7: warning: unused variable 'nREP' [-Wunused-variable]
 1119 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:1162:10: warning: unused variable 'min1' [-Wunused-variable]
 1162 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp: In function 'Rcpp::List RunAdaptiveEffToxTrialCORRCONTOUR(int, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, int, int, double, int, arma::mat)':
SPSOCODE.cpp:2244:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2244 |           for(j=0;j<Dose.n_rows;j++){
      |                   ~^~~~~~~~~~~~
SPSOCODE.cpp:2289:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2289 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:2290:26: warning: comparison of integer expressions of different signedness: 'arma::enable_if2<true, unsigned int>::result' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 2290 |         if(sum(Doses2==j)>=cohort){
      |            ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:2309:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2309 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:2328:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2328 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:2400:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2400 |           for(j=0;j<Dose.n_rows;j++){
      |                   ~^~~~~~~~~~~~
SPSOCODE.cpp:2566:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2566 |           for(j=0;j<Dose.n_rows;j++){
      |                   ~^~~~~~~~~~~~
SPSOCODE.cpp:2610:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2610 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:2611:26: warning: comparison of integer expressions of different signedness: 'arma::enable_if2<true, unsigned int>::result' {aka 'unsigned int'} and 'int' [-Wsign-compare]
 2611 |         if(sum(Doses2==j)>=cohort){
      |            ~~~~~~~~~~~~~~^~~~~~~~
SPSOCODE.cpp:2631:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2631 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:2650:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2650 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:2672:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2672 |         for(j=0;j<Dose.n_rows;j++){
      |                 ~^~~~~~~~~~~~
SPSOCODE.cpp:2708:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2708 |     for(j=0;j<Dose.n_rows;j++){
      |             ~^~~~~~~~~~~~
SPSOCODE.cpp:1990:7: warning: unused variable 'Count' [-Wunused-variable]
 1990 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:2000:7: warning: unused variable 'nREP' [-Wunused-variable]
 2000 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:2043:10: warning: unused variable 'min1' [-Wunused-variable]
 2043 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp: In function 'Rcpp::List UTEFFTOX(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, double)':
SPSOCODE.cpp:3408:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3408 |         for(k=1;k<ORDER.n_rows;k++){
      |                 ~^~~~~~~~~~~~~
SPSOCODE.cpp:3521:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3521 |         for(k=1;k<ORDER.n_rows;k++){
      |                 ~^~~~~~~~~~~~~
SPSOCODE.cpp:2821:10: warning: unused variable 'phivar' [-Wunused-variable]
 2821 |   double phivar=Hypervars[2];  //Variance parameter for frailty correlations
      |          ^~~~~~
SPSOCODE.cpp:2822:10: warning: variable 'phi' set but not used [-Wunused-but-set-variable]
 2822 |   double phi=0;
      |          ^~~
SPSOCODE.cpp:2893:10: warning: unused variable 'epprop' [-Wunused-variable]
 2893 |   double epprop = 0; //proposal values for epsilon
      |          ^~~~~~
SPSOCODE.cpp:2942:10: warning: unused variable 'epEC' [-Wunused-variable]
 2942 |   double epEC = 1;
      |          ^~~~
SPSOCODE.cpp:2943:10: warning: unused variable 'epTC' [-Wunused-variable]
 2943 |   double epTC = 1;
      |          ^~~~
SPSOCODE.cpp:2982:10: warning: unused variable 'holdmin' [-Wunused-variable]
 2982 |   double holdmin=1;
      |          ^~~~~~~
SPSOCODE.cpp: In function 'Rcpp::List AssignEffTox(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, double)':
SPSOCODE.cpp:4002:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4002 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:4047:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4047 |   for(j=0;j<Dose.n_rows;j++){
      |           ~^~~~~~~~~~~~
SPSOCODE.cpp:4065:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4065 |   for(j=0;j<Dose.n_rows;j++){
      |           ~^~~~~~~~~~~~
SPSOCODE.cpp:4084:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4084 |   for(j=0;j<Dose.n_rows;j++){
      |           ~^~~~~~~~~~~~
SPSOCODE.cpp:4114:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4114 |     for(j=1;j<Dose.n_rows;j++){
      |             ~^~~~~~~~~~~~
SPSOCODE.cpp:3744:7: warning: unused variable 'Stopped' [-Wunused-variable]
 3744 |   int Stopped=0;
      |       ^~~~~~~
SPSOCODE.cpp:3791:7: warning: unused variable 'Count' [-Wunused-variable]
 3791 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:3801:7: warning: unused variable 'nREP' [-Wunused-variable]
 3801 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:3824:7: warning: unused variable 'm' [-Wunused-variable]
 3824 |   int m=0;
      |       ^
SPSOCODE.cpp:3841:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
 3841 |   int STOPPED=0;
      |       ^~~~~~~
SPSOCODE.cpp:3842:7: warning: unused variable 'i' [-Wunused-variable]
 3842 |   int i=0;
      |       ^
SPSOCODE.cpp:3844:10: warning: unused variable 'min1' [-Wunused-variable]
 3844 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp:3848:7: warning: unused variable 'nRep' [-Wunused-variable]
 3848 |   int nRep=0;
      |       ^~~~
SPSOCODE.cpp: In function 'Rcpp::List AssignEffToxUT(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, double)':
SPSOCODE.cpp:4471:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4471 |       for(j=0;j<Dose.n_rows;j++){
      |               ~^~~~~~~~~~~~
SPSOCODE.cpp:4516:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4516 |   for(j=0;j<Dose.n_rows;j++){
      |           ~^~~~~~~~~~~~
SPSOCODE.cpp:4536:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4536 |   for(j=0;j<Dose.n_rows;j++){
      |           ~^~~~~~~~~~~~
SPSOCODE.cpp:4559:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4559 |   for(j=0;j<Dose.n_rows;j++){
      |           ~^~~~~~~~~~~~
SPSOCODE.cpp:4598:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4598 |     for(j=1;j<Dose.n_rows;j++){
      |             ~^~~~~~~~~~~~
SPSOCODE.cpp:4222:7: warning: unused variable 'Stopped' [-Wunused-variable]
 4222 |   int Stopped=0;
      |       ^~~~~~~
SPSOCODE.cpp:4240:10: warning: unused variable 'p' [-Wunused-variable]
 4240 |   double p=0;
      |          ^
SPSOCODE.cpp:4241:10: warning: unused variable 'pu' [-Wunused-variable]
 4241 |   double pu=0;
      |          ^~
SPSOCODE.cpp:4242:10: warning: unused variable 'pl' [-Wunused-variable]
 4242 |   double pl=0;
      |          ^~
SPSOCODE.cpp:4243:10: warning: unused variable 'tol' [-Wunused-variable]
 4243 |   double tol=.005;
      |          ^~~
SPSOCODE.cpp:4258:7: warning: unused variable 'Count' [-Wunused-variable]
 4258 |   int Count=0;
      |       ^~~~~
SPSOCODE.cpp:4268:7: warning: unused variable 'nREP' [-Wunused-variable]
 4268 |   int nREP=0;
      |       ^~~~
SPSOCODE.cpp:4294:7: warning: unused variable 'm' [-Wunused-variable]
 4294 |   int m=0;
      |       ^
SPSOCODE.cpp:4311:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable]
 4311 |   int STOPPED=0;
      |       ^~~~~~~
SPSOCODE.cpp:4312:7: warning: unused variable 'i' [-Wunused-variable]
 4312 |   int i=0;
      |       ^
SPSOCODE.cpp:4314:10: warning: unused variable 'min1' [-Wunused-variable]
 4314 |   double min1=0;
      |          ^~~~
SPSOCODE.cpp:4318:7: warning: unused variable 'nRep' [-Wunused-variable]
 4318 |   int nRep=0;
      |       ^~~~
g++ -std=gnu++17 -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -fpic -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Phase12Compare.so RcppExports.o SPSOCODE.o -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64/usr/local/lib/R/library/00LOCK-Phase12Compare/00new/Phase12Compare/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Phase12Compare'
    finding HTML links ... done
    AssignEffTox                            html  
    AssignEffToxUT                          html  
    GETBIN                                  html  
    GetDesire                               html  
    GetEfftoxContour                        html  
    GetEfftoxUt                             html  
    GetPriorsSPSO                           html  
    GetSpsoContour                          html  
    GetSpsoUt                               html  
    ReturnOpt                               html  
    RunAdaptiveEffToxTrialCORR              html  
    RunAdaptiveEffToxTrialCORRCONTOUR       html  
    SimEfftoxContour                        html  
    SimEfftoxUt                             html  
    SimSpsoContour                          html  
    SimSpsoUt                               html  
    UTEFFTOX                                html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Phase12Compare)
+ test -d Phase12Compare/src
+ cd Phase12Compare/src
+ rm -f RcppExports.o SPSOCODE.o Phase12Compare.so
+ rm -f /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64/usr/local/lib/R/library/R.css
+ find /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64@@g '{}' ';'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.5-1.fc39.copr5818630 --unique-debug-suffix -1.5-1.fc39.copr5818630.x86_64 --unique-debug-src-base R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Phase12Compare
extracting debug info from /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64/usr/local/lib/R/library/Phase12Compare/libs/Phase12Compare.so
original debug info size: 2656kB, size after compression: 2464kB
/usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
190 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64
Provides: R-CRAN-Phase12Compare = 1.5-1.fc39.copr5818630 R-CRAN-Phase12Compare(x86-64) = 1.5-1.fc39.copr5818630
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: R-CRAN-Phase12Compare-debugsource-1.5-1.fc39.copr5818630.x86_64
Provides: R-CRAN-Phase12Compare-debugsource = 1.5-1.fc39.copr5818630 R-CRAN-Phase12Compare-debugsource(x86-64) = 1.5-1.fc39.copr5818630
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-CRAN-Phase12Compare-debuginfo-1.5-1.fc39.copr5818630.x86_64
Provides: R-CRAN-Phase12Compare-debuginfo = 1.5-1.fc39.copr5818630 R-CRAN-Phase12Compare-debuginfo(x86-64) = 1.5-1.fc39.copr5818630 debuginfo(build-id) = 6c2f7f26f0808d38eeac2dde48775f78db5cf659
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-CRAN-Phase12Compare-debugsource(x86-64) = 1.5-1.fc39.copr5818630
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64
Wrote: /builddir/build/RPMS/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-Phase12Compare-debugsource-1.5-1.fc39.copr5818630.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-Phase12Compare-debuginfo-1.5-1.fc39.copr5818630.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.9zPrKI
+ umask 022
+ cd /builddir/build/BUILD
+ cd Phase12Compare
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-Phase12Compare-1.5-1.fc39.copr5818630.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.m7fGt2
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf Phase12Compare Phase12Compare.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0