check_filter {TmCalculator} | R Documentation |
In general, whitespaces and non-base characters are removed and characters are converted to uppercase in given method.
check_filter(ntseq, method)
ntseq |
Sequence (5' to 3') of one strand of the DNA nucleic acid duplex as string or vector of characters |
method |
TM_Wallace: check and return "A","B","C","D","G","H","I","K","M","N","R","S","T","V","W" and "Y" TM_GC: check and return "A","B","C","D","G","H","I","K","M","N","R","S","T","V","W", "X" and "Y" TM_NN: check and return "A","C","G","I" and "T" |
Return a sequence which fullfils the requirements of the given method.
Junhui Li
citation("TmCalculator")
ntseq <- c("ATCGBDHKMNRVYWSqq")
check_filter(ntseq,method='Tm_Wallace')
check_filter(ntseq,method='Tm_NN')