RCircos.Set.Core.Components {RCircos} | R Documentation |
Setup core components for RCircos Plot including plot parameters, cytoband data, and base plot positions. This function must be called before chromosome ideogram and any other data plot.
RCircos.Set.Core.Components(cyto.info, chr.exclude = NULL, tracks.inside, tracks.outside)
cyto.info |
A data frame with chromosome ideogram data and columns are ordered by chromosome names, start position, end position, band names, and stain intensity for each chromosome band. |
chr.exclude |
Character vector of chromosome names to be excluded from plot, e.g., chr.exclude <- c("chrX", "chrY"); |
tracks.inside |
Non-negative integer, total number of data tracks inside of chromosome ideogram to be plotted. |
tracks.outside |
Non-negative integer, total number of data tracks outside of chromosome ideogram to be plotted. |
Hongen Zhang
## Not run:
library(RCircos)
data(UCSC.HG19.Human.CytoBandIdeogram)
RCircos.Set.Core.Components(
cyto.info=UCSC.HG19.Human.CytoBandIdeogram,
chr.exclude=c("chrX", "chrY"),
tracks.inside=10, tracks.outside=0)
## End(Not run)