effect.estimate.add {MoBPS} | R Documentation |
Function to estimate marker effects
effect.estimate.add(geno, pheno, map = NULL, scaling = TRUE)
geno |
genotype dataset (marker x individuals) |
pheno |
phenotype dataset (each phenotype in a row) |
map |
genomic map |
scaling |
Set FALSE to not perform variance scaling |
Empirical kinship matrix (IBD-based since Founders)
data(ex_pop)
pheno <- get.pheno(ex_pop, gen=1:5)
geno <- get.geno(ex_pop, gen=1:5)
map <- get.map(ex_pop, use.snp.nr=TRUE)
real.bv.add <- effect.estimate.add(geno, pheno, map)