FPSSM2 {PSSMCOOL} | R Documentation |
This function takes two PSSM files as argument and uses FPSSM function for making feature vector of length 100 correspond to this pair of proteins.
FPSSM2(pssm_name1, pssm_name2, hk)
pssm_name1 |
The name of first PSSM Matrix file |
pssm_name2 |
The name of second PSSM Matrix file |
hk |
a parameter that indicates which amino acid alphabet must be used |
Feature vector of length 100
Zahiri, J., et al. (2013) PPIevo: protein-protein interaction prediction from PSSM based evolutionary information, Genomics, 102, 237-242.
s1<-system.file("extdata","C7GQS7.txt.pssm",package="PSSMCOOL")
s2<-system.file("extdata","C7GRQ3.txt.pssm",package="PSSMCOOL")
s<-FPSSM2(s1,s2,8)