pssm_cc {PSSMCOOL} | R Documentation |
The PSSM-CC variable measures the correlation of two different properties between two residues separated by a distance of lg along the sequence.
pssm_cc(pssm_name, g = 10)
pssm_name |
name of PSSM Matrix file |
g |
shortest protein length in dataset minus one |
feature vector of length 3800
Dong, Q., Zhou, S. and Guan, J. (2009) A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation, Bioinformatics, 25, 2655-2662.
X<-pssm_cc(system.file("extdata","C7GQS7.txt.pssm",package="PSSMCOOL"))