rpssm {PSSMCOOL} | R Documentation |
To obtain this feature, first the columns of the PSSM matrix are merged to obtain an L*10 matrix. Then, with a relationship similar to the auto covariance transformation feature, this feature with a length of 110 is obtained from this matrix.
rpssm(pssm_name)
pssm_name |
name of PSSM Matrix file |
feature vector of length 110
Ding, S., et al. (2014) A protein structural classes prediction method based on predicted secondary structure and PSI-BLAST profile, Biochimie, 97, 60-65.
X<-rpssm(system.file("extdata", "C7GQS7.txt.pssm", package="PSSMCOOL"))