%global __brp_check_rpaths %{nil}
%global packname  superdiag
%global packver   2.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0
Release:          1%{?dist}%{?buildtag}
Summary:          A Comprehensive Test Suite for Testing Markov Chain Nonconvergence

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-coda 
Requires:         R-CRAN-coda 

%description
The 'superdiag' package provides a comprehensive test suite for testing
Markov Chain nonconvergence. It integrates five standard empirical MCMC
convergence diagnostics (Gelman-Rubin, Geweke, Heidelberger-Welch,
Raftery-Lewis, and Hellinger distance) and plotting functions for trace
plots and density histograms. The functions of the package can be used to
present all diagnostic statistics and graphs at once for conveniently
checking MCMC nonconvergence.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}