Mock Version: 5.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-MABOUST.spec'], chrootPath='/var/lib/mock/fedora-39-x86_64-1692132680.680485/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fc185263f90>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2kmjh1fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2kmjh1fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f5bda95f21f84e3883f096acd4d1bea0', '-D', '/var/lib/mock/fedora-39-x86_64-1692132680.680485/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2kmjh1fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-MABOUST.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.src.rpm
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-MABOUST.spec'], chrootPath='/var/lib/mock/fedora-39-x86_64-1692132680.680485/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fc185263f90>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2kmjh1fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2kmjh1fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '029ffb8ff78747e5aaf2403116014314', '-D', '/var/lib/mock/fedora-39-x86_64-1692132680.680485/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.2kmjh1fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-MABOUST.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.fUwKcI
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf MABOUST
+ /usr/bin/mkdir -p MABOUST
+ cd MABOUST
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MABOUST_1.0.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ rm -rf /builddir/build/BUILD/MABOUST-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/MABOUST-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';'
+ '[' -d MABOUST/src ']'
+ find MABOUST/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';'
+ find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nesZdu
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd MABOUST
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.eTdsE8
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64
++ dirname /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd MABOUST
+ mkdir -p /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64/usr/local/lib/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64/usr/local/lib/R/library MABOUST
* installing *source* package 'MABOUST' ...
** package 'MABOUST' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)'
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c MABOUST.cpp -o MABOUST.o
MABOUST.cpp: In function 'int Sample2(arma::vec)':
MABOUST.cpp:31:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   31 |   for(m=1;m<groupprob.n_rows;m++){
      |           ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:44:14: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   44 |     for(m=0;m<(groupprob.n_rows-2);m++){
      |             ~^~~~~~~~~~~~~~~~~~~~~
MABOUST.cpp: In function 'int IsAdmissable(arma::mat, arma::mat)':
MABOUST.cpp:71:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   71 |   for(k=0;k<gamma1.n_rows;k++){
      |           ~^~~~~~~~~~~~~~
MABOUST.cpp:72:16: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   72 |     for(m1=0;m1<(gamma1.n_cols-1);m1++){
      |              ~~^~~~~~~~~~~~~~~~~~
MABOUST.cpp: In function 'int Sample1(int)':
MABOUST.cpp:90:7: warning: unused variable 'm' [-Wunused-variable]
   90 |   int m=0;
      |       ^
MABOUST.cpp: In function 'int SampleSpike(arma::vec, int)':
MABOUST.cpp:107:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  107 |   for(m1 =0 ; m1<SPIKEHOLD.n_rows;m1++){
      |               ~~^~~~~~~~~~~~~~~~~
MABOUST.cpp:122:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  122 |     for(m1=0;m1<SPIKEHOLD.n_rows;m1++){
      |              ~~^~~~~~~~~~~~~~~~~
MABOUST.cpp: In function 'arma::vec GetBoundariesALPHA(int, arma::vec)':
MABOUST.cpp:209:9: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  209 |     if(m==(beta.n_rows-1)){
      |        ~^~~~~~~~~~~~~~~~~
MABOUST.cpp: In function 'arma::vec GetBoundariesBETA(int, arma::vec)':
MABOUST.cpp:267:9: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  267 |     if(m==(alpha.n_rows-1)){
      |        ~^~~~~~~~~~~~~~~~~~
MABOUST.cpp: In function 'double LIKECOV(arma::vec, arma::vec, arma::mat, arma::mat, arma::vec)':
MABOUST.cpp:405:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  405 |   for(m=0;m<eta.n_rows;m++){
      |           ~^~~~~~~~~~~
MABOUST.cpp:397:7: warning: unused variable 'k' [-Wunused-variable]
  397 |   int k=1;
      |       ^
MABOUST.cpp:398:7: warning: unused variable 'j' [-Wunused-variable]
  398 |   int j=0;
      |       ^
MABOUST.cpp: In function 'Rcpp::List MCMC_MABOUST(arma::vec, arma::vec, arma::mat, double, double, double, double, int)':
MABOUST.cpp:522:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  522 |   for(j =0;j<thetavec.n_cols;j++){
      |            ~^~~~~~~~~~~~~~~~
MABOUST.cpp:564:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  564 |   for(m=0;m<SPIKEHOLD.n_rows;m++){
      |           ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:592:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  592 |           for(k=0;k<thetavec.n_rows;k++){
      |                   ~^~~~~~~~~~~~~~~~
MABOUST.cpp:593:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  593 |             for(m1=0;m1<thetavec.n_cols;m1++){
      |                      ~~^~~~~~~~~~~~~~~~
MABOUST.cpp:611:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  611 |           for(k=0;k<Beta.n_rows;k++){
      |                   ~^~~~~~~~~~~~
MABOUST.cpp:632:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  632 |       for(k=0;k<thetavec.n_rows;k++){
      |               ~^~~~~~~~~~~~~~~~
MABOUST.cpp:637:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  637 |           for(m1=0;m1<thetavec.n_cols;m1++){
      |                    ~~^~~~~~~~~~~~~~~~
MABOUST.cpp:644:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  644 |             for(j=0;j<SPIKEHOLD.n_rows;j++){
      |                     ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:714:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  714 |         for(j=0;j<thetavecprop.n_cols;j++){
      |                 ~^~~~~~~~~~~~~~~~~~~~
MABOUST.cpp:725:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  725 |         for(j=0;j<SPIKEHOLD.n_rows;j++){
      |                 ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:729:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  729 |             for(m2=0;m2<thetavecprop.n_cols;m2++){
      |                      ~~^~~~~~~~~~~~~~~~~~~~
MABOUST.cpp:803:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  803 |       for(k=0;k<Beta.n_rows;k++){
      |               ~^~~~~~~~~~~~
MABOUST.cpp:843:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  843 |       for(j=0;j<thetavec.n_rows;j++){
      |               ~^~~~~~~~~~~~~~~~
MABOUST.cpp:844:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  844 |         for(m1=0;m1<thetavec.n_cols;m1++){
      |                  ~~^~~~~~~~~~~~~~~~
MABOUST.cpp:850:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  850 |       for(k=0;k<Beta.n_rows;k++){
      |               ~^~~~~~~~~~~~
MABOUST.cpp:854:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  854 |       for(k=0;k<SPIKEHOLD.n_rows;k++){
      |               ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:878:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  878 |           for(k=0;k<thetavec.n_rows;k++){
      |                   ~^~~~~~~~~~~~~~~~
MABOUST.cpp:879:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  879 |             for(m1=0;m1<thetavec.n_cols;m1++){
      |                      ~~^~~~~~~~~~~~~~~~
MABOUST.cpp:897:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  897 |           for(k=0;k<Beta.n_rows;k++){
      |                   ~^~~~~~~~~~~~
MABOUST.cpp:918:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  918 |       for(k=0;k<thetavec.n_rows;k++){
      |               ~^~~~~~~~~~~~~~~~
MABOUST.cpp:923:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  923 |           for(m1=0;m1<thetavec.n_cols;m1++){
      |                    ~~^~~~~~~~~~~~~~~~
MABOUST.cpp:930:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  930 |             for(j=0;j<SPIKEHOLD.n_rows;j++){
      |                     ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:1000:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1000 |         for(j=0;j<thetavecprop.n_cols;j++){
      |                 ~^~~~~~~~~~~~~~~~~~~~
MABOUST.cpp:1011:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1011 |         for(j=0;j<SPIKEHOLD.n_rows;j++){
      |                 ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:1015:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1015 |             for(m2=0;m2<thetavecprop.n_cols;m2++){
      |                      ~~^~~~~~~~~~~~~~~~~~~~
MABOUST.cpp:1096:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1096 |       for(j=0;j<thetavec.n_rows;j++){
      |               ~^~~~~~~~~~~~~~~~
MABOUST.cpp:1097:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1097 |         for(m1=0;m1<thetavec.n_cols;m1++){
      |                  ~~^~~~~~~~~~~~~~~~
MABOUST.cpp:1103:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1103 |       for(k=0;k<Beta.n_rows;k++){
      |               ~^~~~~~~~~~~~
MABOUST.cpp:1107:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1107 |       for(k=0;k<SPIKEHOLD.n_rows;k++){
      |               ~^~~~~~~~~~~~~~~~~
MABOUST.cpp:462:10: warning: unused variable 'PNPO' [-Wunused-variable]
  462 |   double PNPO = .5; //Probability of npo
      |          ^~~~
MABOUST.cpp:464:7: warning: unused variable 'g' [-Wunused-variable]
  464 |   int g=0;
      |       ^
MABOUST.cpp:470:7: warning: unused variable 'MEANS' [-Wunused-variable]
  470 |   int MEANS=0;
      |       ^~~~~
MABOUST.cpp:472:7: warning: unused variable 'IntIN' [-Wunused-variable]
  472 |   int IntIN=0;
      |       ^~~~~
MABOUST.cpp:473:7: warning: unused variable 'IntOUT' [-Wunused-variable]
  473 |   int IntOUT=0;
      |       ^~~~~~
MABOUST.cpp:481:7: warning: unused variable 'i' [-Wunused-variable]
  481 |   int i=0; //For the patient index
      |       ^
MABOUST.cpp:482:7: warning: unused variable 'rep' [-Wunused-variable]
  482 |   int rep=0; //For the simulation repetition.
      |       ^~~
MABOUST.cpp:493:10: warning: unused variable 'NewSlope' [-Wunused-variable]
  493 |   double NewSlope=0;
      |          ^~~~~~~~
MABOUST.cpp:494:7: warning: unused variable 'Which1' [-Wunused-variable]
  494 |   int Which1=0;
      |       ^~~~~~
MABOUST.cpp:500:10: warning: unused variable 'signew' [-Wunused-variable]
  500 |   double signew=0;
      |          ^~~~~~
MABOUST.cpp:501:10: warning: unused variable 'slopenew' [-Wunused-variable]
  501 |   double slopenew=0;
      |          ^~~~~~~~
MABOUST.cpp:502:10: warning: unused variable 'Munew' [-Wunused-variable]
  502 |   double Munew=0;
      |          ^~~~~
MABOUST.cpp:514:7: warning: unused variable 'count' [-Wunused-variable]
  514 |   int count=0;
      |       ^~~~~
MABOUST.cpp:537:7: warning: unused variable 'm3' [-Wunused-variable]
  537 |   int m3=0;
      |       ^~
g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o MABOUST.so MABOUST.o RcppExports.o -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64/usr/local/lib/R/library/00LOCK-MABOUST/00new/MABOUST/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MABOUST'
    finding HTML links ... done
    CUTOFF                                  html  
    GetProbs                                html  
    GetScenario                             html  
    MABOUST                                 html  
    MCMC_MABOUST                            html  
    SimMABOUST                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MABOUST)
+ test -d MABOUST/src
+ cd MABOUST/src
+ rm -f MABOUST.o RcppExports.o MABOUST.so
+ rm -f /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64/usr/local/lib/R/library/R.css
+ find /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64@@g '{}' ';'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.1-1.fc39.copr6286329 --unique-debug-suffix -1.0.1-1.fc39.copr6286329.x86_64 --unique-debug-src-base R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/MABOUST
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64
53 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64
Provides: R-CRAN-MABOUST = 1.0.1-1.fc39.copr6286329 R-CRAN-MABOUST(x86-64) = 1.0.1-1.fc39.copr6286329
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: R-CRAN-MABOUST-debugsource-1.0.1-1.fc39.copr6286329.x86_64
Provides: R-CRAN-MABOUST-debugsource = 1.0.1-1.fc39.copr6286329 R-CRAN-MABOUST-debugsource(x86-64) = 1.0.1-1.fc39.copr6286329
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-CRAN-MABOUST-debuginfo-1.0.1-1.fc39.copr6286329.x86_64
Provides: R-CRAN-MABOUST-debuginfo = 1.0.1-1.fc39.copr6286329 R-CRAN-MABOUST-debuginfo(x86-64) = 1.0.1-1.fc39.copr6286329 debuginfo(build-id) = b7abda3d6e119b24d2be1f5fe6a1c0cda89bb360
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-CRAN-MABOUST-debugsource(x86-64) = 1.0.1-1.fc39.copr6286329
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64
Wrote: /builddir/build/RPMS/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-MABOUST-debugsource-1.0.1-1.fc39.copr6286329.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-MABOUST-debuginfo-1.0.1-1.fc39.copr6286329.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Ho4WML
+ umask 022
+ cd /builddir/build/BUILD
+ cd MABOUST
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-MABOUST-1.0.1-1.fc39.copr6286329.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.OozPFS
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/MABOUST-SPECPARTS
+ rm -rf MABOUST MABOUST.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0