Datasets {cubfits} | R Documentation |
Examples of toy data to test and demonstrate cubfits.
b.Init
ex.test
ex.train
All are in list formats.
b.Init
contains two sets (roc
and rocnse
) of
initial coefficients including mutation and selection parameters for
3 amino acids 'A', 'C', and 'D' in matrix
format.
Both sets are in b
format.
ex.train
contains a training set of 100 sequences including
3 reu13.df
(codon counts in reu13
data frame format
divided by amino acids),
3 y
(codon counts in simplified data frame format
divided by amino acids),
3 n
(total amino acid counts in vector format
divided by amino acids), and
phi.Obs
(observed phi values in vector format).
ex.test
contains a testing set of the other 100 sequences in the
same format of ex.train
.
Wei-Chen Chen wccsnow@gmail.com.
https://github.com/snoweye/cubfits/
init.function()
, cubfits()
,
cubpred()
, and cubappr()
.
## Not run:
suppressMessages(library(cubfits, quietly = TRUE))
str(b.Init)
str(ex.test)
str(ex.train)
## End(Not run)