LSPFP-package {LSPFP} | R Documentation |
Creates plots of peptides from shotgun proteomics analysis of secretome and lysate samples. These plots contain associated protein features and scores for potential secretion and truncation.
The DESCRIPTION file:
Package: | LSPFP |
Type: | Package |
Title: | Lysate and Secretome Peptide Feature Plotter |
Version: | 1.0.3 |
Date: | 2020-05-11 |
Author: | Rafael Dellen, with contributions of Fabian Kruse |
Maintainer: | Gereon Poschmann <gereon.poschmann@hhu.de> |
Description: | Creates plots of peptides from shotgun proteomics analysis of secretome and lysate samples. These plots contain associated protein features and scores for potential secretion and truncation. |
License: | GPL-3 |
Depends: | seqinr, RCurl, data.table, bit64 |
Imports: | R.utils, graphics, grDevices, stats, utils |
NeedsCompilation: | no |
Packaged: | 2016-05-19 10:46:48 UTC; dellen |
Repository: | CRAN |
Date/Publication: | 2016-05-19 16:35:29 |
RoxygenNote: | 6.1.1 |
Index of help topics:
LSPFP-package Lysate and Secretome Peptide Feature Plotter printSelectedPeptides Only print peptides wrapperLSPFP wrapperLSPFP
The package offers two functions. Please have a look at wrapperLSPFP and printSelectedPeptides for details.
Rafael Dellen, with contributions of Fabian Kruse
Maintainer: Gereon Poschmann <gereon.poschmann@hhu.de>
#Please have a look at wrapperLSPFP for an example.