colocalized {colocalized} | R Documentation |
Searches for clusters of colocalized transcription factor (TF) binding sequences.
colocalized(choose,chr,n)
searches for instances where the sequences from each
table element in choose are colocalized to within a cut-off distance.
colocalized(choose, chr, n, cores)
choose |
List of .bed tables |
chr |
Chromosome |
n |
The cut-off distance |
cores |
Number of cores for parallel processing. Leaving this blank causes the program to use default (series) processing |
Table of clusters found in chr
complex<-list(nfkb1,nfkb2,relb)
colocalized(complex,"chrY",150)