msa.tree {EnvNJ} | R Documentation |
Infers a tree base on a MSA.
msa.tree(data, outgroup = 'any')
data |
input data must be a dataframe where each row corresponds to a protein and each column to a species. |
outgroup |
when a rooted tree is desired, indicate the species to be used as outgroup. |
The input data has the same format that the input data used for EnvNJ or SVD-n-Gram methods. Thus, the name of columns must correspond to that of species.
A list containing the (i) MSA, (ii) the distance matrix and (iii) the tree.
msa.merge
## Not run:
data(bovids)
msa.tree(bovids)
## End(Not run)