create_mhcnuggets_options {mhcnuggetsr} | R Documentation |
Create a set of options to run MHCnuggets with.
create_mhcnuggets_options(
mhc_class = NA,
mhc,
ba_models = FALSE,
verbose = FALSE,
folder_name = get_default_mhcnuggets_folder(),
mhcnuggets_url = get_mhcnuggets_url()
)
mhc_class |
MHC class. Must be |
mhc |
the MHC haplotype name |
ba_models |
Set to TRUE to use a pure BA model |
verbose |
set to TRUE for more debug information |
folder_name |
superfolder of MHCnuggets.
The name of the superfolder is |
mhcnuggets_url |
URL to the MHCnuggets GitHub repository |
This function will give an error message if the arguments are invalid.
an mhcnuggets_options
an mhcnuggets_options
created
by create_mhcnuggets_options is always
checked by check_mhcnuggets_options
Richèl J.C. Bilderbeek
use create_test_mhcnuggets_options to create an MHCnuggets object for testing
if (is_mhcnuggets_installed()) {
create_mhcnuggets_options(
mhc = "HLA-A02:01"
)
}