default_params_doc {mhcnuggetsr} | R Documentation |
This function does nothing. It is intended to inherit the documentation of the parameters from.
default_params_doc(
ba_models,
folder_name,
mhc,
mhcs,
mhc_class,
mhcnuggets_options,
mhcnuggets_url,
n_aas,
peptide,
peptides,
peptide_length,
peptides_path,
protein_sequence,
verbose
)
ba_models |
Set to TRUE to use a pure BA model |
folder_name |
superfolder of MHCnuggets.
The name of the superfolder is |
mhc |
the MHC haplotype name |
mhcs |
the MHC haplotype names |
mhc_class |
MHC class. Must be |
mhcnuggets_options |
options to run MHCnuggets with, as can be created by create_mhcnuggets_options. |
mhcnuggets_url |
URL to the MHCnuggets GitHub repository |
n_aas |
number of amino acids |
peptide |
one peptide sequence |
peptides |
one of more peptide sequences |
peptide_length |
length of a peptide, in number of amino acids |
peptides_path |
the path to the peptides |
protein_sequence |
protein sequence, in uppercase,
for example |
verbose |
set to TRUE for more debug information |
This is an internal function, so it should be marked with
@noRd
. This is not done, as this will disallow all
functions to find the documentation parameters
Richèl J.C. Bilderbeek