homoZygotTestCpp {detectRUNS} | R Documentation |
This is a core function. Parameters on how to consider a window homozygous are here (maxHet, maxMiss)
homoZygotTestCpp(x, gaps, maxHet, maxMiss, maxGap)
x |
vector of 0/1 genotypes (from genoConvert()) |
gaps |
vector of differences between consecutive positions (gaps) in bps |
maxHet |
max n. of heterozygous SNP in a homozygous window |
maxMiss |
max n. of missing in a window |
maxGap |
max distance between consecutive SNP in a window to be still considered a potential run |
TRUE/FALSE (whether a window is homozygous or NOT)