%global __brp_check_rpaths %{nil}
%global packname  dMod
%global packver   1.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Dynamic Modeling and Parameter Estimation in ODE Models

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-cOde >= 1.0
BuildRequires:    R-CRAN-deSolve 
BuildRequires:    R-CRAN-rootSolve 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-plyr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-doParallel 
Requires:         R-CRAN-cOde >= 1.0
Requires:         R-CRAN-deSolve 
Requires:         R-CRAN-rootSolve 
Requires:         R-CRAN-ggplot2 
Requires:         R-parallel 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-plyr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-doParallel 

%description
The framework provides functions to generate ODEs of reaction networks,
parameter transformations, observation functions, residual functions, etc.
The framework follows the paradigm that derivative information should be
used for optimization whenever possible. Therefore, all major functions
produce and can handle expressions for symbolic derivatives. The methods
used in dMod were published in Kaschek et al, 2019,
<doi:10.18637/jss.v088.i10>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}