scan_multi_oneqtl_perm {qtl2pleio} | R Documentation |
Permute the phenotypes matrix and then scan the genome. Record the genomewide greatest LOD score for each permuted data set.
scan_multi_oneqtl_perm(
probs_list,
pheno,
kinship_list = NULL,
addcovar = NULL,
n_perm = 1,
cores = 1
)
probs_list |
a list of founder allele probabilities, one array per chromosome |
pheno |
a matrix of trait values |
kinship_list |
a list of kinship matrices, one per chromosome |
addcovar |
a matrix of covariate values |
n_perm |
positive integer for the number of permuted data sets to scan. |
cores |
number of cores for parallelization |
a vector of 'n_perm' max lod statistics