%global __brp_check_rpaths %{nil}
%global packname  GxEScanR
%global packver   2.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Run GWAS/GWEIS Scans Using Binary Dosage Files

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildRequires:    R-CRAN-Rcpp >= 1.0.4
BuildRequires:    R-CRAN-prodlim 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-Rcpp >= 1.0.4
Requires:         R-CRAN-prodlim 

%description
Tools to run genome-wide association study (GWAS) and genome-wide by
environment interaction study (GWEIS) scans using the genetic data stored
in a binary dosage file. The user provides a data frame with the subject's
covariate data and the information about the binary dosage file returned
by the BinaryDosage::getbdinfo() routine.

%prep
%setup -q -c -n %{packname}

find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}