%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  labNorm
%global packver   1.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Normalize Laboratory Measurements by Age and Sex

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-forcats 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rappdirs 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-withr 
BuildRequires:    R-CRAN-yesno 
Requires:         R-CRAN-cli 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-forcats 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rappdirs 
Requires:         R-CRAN-scales 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-utils 
Requires:         R-CRAN-withr 
Requires:         R-CRAN-yesno 

%description
Provides functions for normalizing standard laboratory measurements (e.g.
hemoglobin, cholesterol levels) according to age and sex, based on the
algorithms described in "Personalized lab test models to quantify disease
potentials in healthy individuals" (Netta Mendelson Cohen, Omer
Schwartzman, Ram Jaschek, Aviezer Lifshitz, Michael Hoichman, Ran Balicer,
Liran I. Shlush, Gabi Barbash & Amos Tanay,
<doi:10.1038/s41591-021-01468-6>). Allows users to easily obtain
normalized values for standard lab results, and to visualize their
distributions. See more at <https://tanaylab.weizmann.ac.il/labs/>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}