%global __brp_check_rpaths %{nil}
%global packname  msigdbr
%global packver   7.5.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          7.5.1
Release:          1%{?dist}%{?buildtag}
Summary:          MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4
Requires:         R-core >= 3.4
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr >= 0.7.0
BuildRequires:    R-CRAN-babelgene 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyselect 
Requires:         R-CRAN-dplyr >= 0.7.0
Requires:         R-CRAN-babelgene 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyselect 

%description
Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically
used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian
et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015
<doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with
key-value pairs. The package includes the human genes as listed in MSigDB
as well as the corresponding symbols and IDs for frequently studied model
organisms such as mouse, rat, pig, fly, and yeast.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}