amr_positives {Plasmidprofiler} | R Documentation |
This function loads the imported blast results, identifies which plasmids carry AMR genes at highest identity. May have issues with multiple genes per plasmid, currently optimized for identifying one of two genes
amr_positives(blast.results)
blast.results |
Blast results loaded from read_blast or from Global Env |
Two column DF of plasmid names and genes present
## Not run:
amr_positives(blastdata)
## End(Not run)