%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  omicsTools
%global packver   1.0.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.5
Release:          1%{?dist}%{?buildtag}
Summary:          Omics Data Process Toolbox

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-shiny >= 1.7.2
BuildRequires:    R-CRAN-golem >= 0.3.5
BuildRequires:    R-CRAN-config >= 0.3.1
BuildRequires:    R-CRAN-bs4Dash 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-tibble 
Requires:         R-CRAN-shiny >= 1.7.2
Requires:         R-CRAN-golem >= 0.3.5
Requires:         R-CRAN-config >= 0.3.1
Requires:         R-CRAN-bs4Dash 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-tibble 

%description
Processing and analyzing omics data from genomics, transcriptomics,
proteomics, and metabolomics platforms. It provides functions for
preprocessing, normalization, visualization, and statistical analysis, as
well as machine learning algorithms for predictive modeling. 'omicsTools'
is an essential tool for researchers working with high-throughput omics
data in fields such as biology, bioinformatics, and medicine.The QC-RLSC
(quality control–based robust LOESS signal correction) algorithm is used
for normalization. Dunn et al. (2011) <doi:10.1038/nprot.2011.335>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}