mock_predict_topologies_from_sequences {pureseqtmr} | R Documentation |
Do a mock prediction directy on a protein sequence, as can be useful in testing Use predict_topologies_from_sequences for doing a real prediction.
mock_predict_topologies_from_sequences(protein_sequences)
protein_sequences |
one ore more protein sequence,
each sequence with the amino acids as capitals, for
example |
a topology as a string of zeroes and ones, where a one denotes that the corresponding amino acid is located within the membrane.
Richèl J.C. Bilderbeek
protein_sequence <- paste0(
"QEKNWSALLTAVVIILTIAGNILVIMAVSLEKKLQNATNYFLM",
"SLAIADMLLGFLVMPVSMLTILYGYRWP"
)
mock_predict_topologies_from_sequences(protein_sequence)