browse_msig {msig} | R Documentation |
Retrieve Gene set Names from MSigDB database Retrieve gene set names from MSigDB database by the gene set name and collection. the search filed is gene name.
browse_msig(geneSetName = "", collection = "")
geneSetName |
one keyword for gene set name, default is empty |
collection |
one collection, default is empty |
gene set names
# missing genSetName and collection to get all gene set names
x <- browse_msig()
# search for gene names include immune
x <- browse_msig('immune')
x |>
msig_view('cells','response','to','m')
# search for gene names include immune in c8
browse_msig('immune','c8')
# gene names in c8
browse_msig('immune','c8')