%global __brp_check_rpaths %{nil}
%global packname  qra
%global packver   0.2.7
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.7
Release:          1%{?dist}%{?buildtag}
Summary:          Quantal Response Analysis for Dose-Mortality Data

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-lattice 
BuildRequires:    R-CRAN-latticeExtra 
BuildRequires:    R-CRAN-knitr 
BuildRequires:    R-CRAN-rmarkdown 
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-splines 
BuildRequires:    R-CRAN-ggplot2 
Requires:         R-CRAN-lattice 
Requires:         R-CRAN-latticeExtra 
Requires:         R-CRAN-knitr 
Requires:         R-CRAN-rmarkdown 
Requires:         R-CRAN-lme4 
Requires:         R-splines 
Requires:         R-CRAN-ggplot2 

%description
Functions are provided that implement the use of the Fieller's formula
methodology, for calculating a confidence interval for a ratio of
(commonly, correlated) means.  See Fieller (1954)
<doi:10.1111/j.2517-6161.1954.tb00159.x>.  Here, the application of
primary interest is to studies of insect mortality response to increasing
doses of a fumigant, or, e.g., to time in coolstorage. The formula is used
to calculate a confidence interval for the dose or time required to
achieve a specified mortality proportion, commonly 0.5 or 0.99.  Vignettes
demonstrate link functions that may be considered, checks on fitted
models, and alternative choices of error family.  Note in particular the
betabinomial error family. See also Maindonald, Waddell, and Petry (2001)
<doi:10.1016/S0925-5214(01)00082-5>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}