nucmerRMD {CovidMutations} | R Documentation |
Manipulate the "nucmer" object to make the analysis easier.
nucmerRMD(nucmer = nucmer, outdir = NULL, chinalist = chinalist)
nucmer |
An object called "nucmer", mutation information derived from "nucmer.snp" variant file by "seqkit" software and "nucmer SNP-calling" scripts. |
outdir |
The output directory. |
chinalist |
A list of places in China, for displacing some original cities with "China" in order to make the downstream analysis easier. |
Saving the updated "nucmer" object.
data("nucmer")
data("chinalist")
#outdir <- tempdir()
nucmerr<- nucmerRMD(nucmer = nucmer, outdir = NULL, chinalist = chinalist)