add_redundants {onemap} | R Documentation |
Add the redundant markers removed by create_data_bins function
Description
Add the redundant markers removed by create_data_bins function
Usage
add_redundants(sequence, onemap.obj, bins)
Arguments
sequence |
object of class sequence
|
onemap.obj |
object of class onemap.obj before redundant markers were removed
|
bins |
object of class onemap_bin
|
Value
New sequence object of class sequence
, which is a list containing the
following components:
seq.num |
a vector containing the
(ordered) indices of markers in the sequence, according to the input file.
|
seq.phases |
a vector with the linkage phases between markers
in the sequence, in corresponding positions. -1 means that there are
no defined linkage phases.
|
seq.rf |
a vector with the
recombination frequencies between markers in the sequence. -1 means
that there are no estimated recombination frequencies.
|
seq.like |
log-likelihood of the corresponding linkage map.
|
data.name |
object of class onemap with the raw
data.
|
twopt |
object of class rf_2pts with the
2-point analyses.
|
Author(s)
Cristiane Taniguti, chtaniguti@tamu.edu
See Also
find_bins
[Package
onemap version 3.0.0
Index]