%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  nodiv
%global packver   1.4.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.4.2
Release:          1%{?dist}%{?buildtag}
Summary:          Compares the Distribution of Sister Clades Through a Phylogeny

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0
Requires:         R-core >= 3.0
BuildArch:        noarch
BuildRequires:    R-CRAN-picante 
BuildRequires:    R-CRAN-raster 
BuildRequires:    R-CRAN-ape 
BuildRequires:    R-CRAN-sp 
BuildRequires:    R-CRAN-vegan 
BuildRequires:    R-utils 
Requires:         R-CRAN-picante 
Requires:         R-CRAN-raster 
Requires:         R-CRAN-ape 
Requires:         R-CRAN-sp 
Requires:         R-CRAN-vegan 
Requires:         R-utils 

%description
An implementation of the nodiv algorithm, see Borregaard, M.K., Rahbek,
C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014.
Node-based analysis of species distributions. Methods in Ecology and
Evolution 5(11): 1225-1235. <DOI:10.1111/2041-210X.12283>. Package for
phylogenetic analysis of species distributions. The main function goes
through each node in the phylogeny, compares the distributions of the two
descendant nodes, and compares the result to a null model. This highlights
nodes where major distributional divergence have occurred. The
distributional divergence for these nodes is mapped.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}