pairwise.propShared {PopGenReport} | R Documentation |
Calculates proportion of shared alleles per pairs of populations based on the minima of allele frequency for each allel (then summed and averaged over loci). Returns a similarity matrix (upper diagonal of the pairwise matrix.
pairwise.propShared(gi)
gi |
a genind object with at least two populations |
a matrix of proportion of shared alleles between populations