Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10d' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6665562-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.69 PID: 26247 Logging PID: 26248 Task: {'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 6665562, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'df3f70d0035eac0f7724d8c38d1bb6c2e90524e3', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-diversityForest', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-diversityForest', 'package_version': '0.4.0-1', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'submitter': 'iucar', 'tags': [], 'task_id': '6665562-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-diversityForest /var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-diversityForest', '/var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest'... Running: git checkout df3f70d0035eac0f7724d8c38d1bb6c2e90524e3 -- cmd: ['git', 'checkout', 'df3f70d0035eac0f7724d8c38d1bb6c2e90524e3', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest rc: 0 stdout: stderr: Note: switching to 'df3f70d0035eac0f7724d8c38d1bb6c2e90524e3'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at df3f70d automatic import of R-CRAN-diversityForest Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading diversityForest_0.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o diversityForest_0.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-diversityForest/diversityForest_0.4.0.tar.gz/md5/73a8a08d30eb21acac72bcfb2441fed3/diversityForest_0.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 177k 100 177k 0 0 1506k 0 --:--:-- --:--:-- --:--:-- 1515k INFO: Reading stdout from command: md5sum diversityForest_0.4.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest/R-CRAN-diversityForest.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700317982.767386 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest/R-CRAN-diversityForest.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700317982.767386 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest/R-CRAN-diversityForest.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1700317982.767386/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 31 kB/s | 1.5 kB 00:00 Copr repository 46 MB/s | 26 MB 00:00 fedora 517 kB/s | 23 kB 00:00 updates 275 kB/s | 13 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.21-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-4.fc39 fedora 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-30 fedora 18 k findutils x86_64 1:4.9.0-5.fc39 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-10.fc39 updates 70 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 262-1.fc39 fedora 84 k rpm-build x86_64 4.19.0-1.fc39 fedora 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc39 fedora 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-4.fc39 fedora 117 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-13.fc39 fedora 5.6 M binutils-gold x86_64 2.40-13.fc39 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k coreutils-common x86_64 9.3-4.fc39 fedora 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231113-1.gitb402e82.fc39 updates 99 k curl x86_64 8.2.1-3.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-10.fc39 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.190-1.fc39 updates 550 k elfutils-debuginfod-client x86_64 0.190-1.fc39 updates 38 k elfutils-default-yama-scope noarch 0.190-1.fc39 updates 14 k elfutils-libelf x86_64 0.190-1.fc39 updates 195 k elfutils-libs x86_64 0.190-1.fc39 updates 260 k fedora-gpg-keys noarch 39-1 fedora 130 k fedora-release noarch 39-30 fedora 8.1 k fedora-release-identity-basic noarch 39-30 fedora 8.9 k fedora-repos noarch 39-1 fedora 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-10.fc39 updates 4.2 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-10.fc39 updates 2.1 M glibc-common x86_64 2.38-10.fc39 updates 349 k glibc-gconv-extra x86_64 2.38-10.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.1-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-2.fc39 updates 764 k libacl x86_64 2.3.1-8.fc39 fedora 23 k libarchive x86_64 3.7.1-1.fc39 fedora 408 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.2-1.fc39 fedora 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-7.fc39 fedora 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-3.fc39 fedora 323 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-1.fc39 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc39 fedora 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-4.fc39 updates 111 k libgomp x86_64 13.2.1-4.fc39 updates 320 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc39 fedora 155 k libnghttp2 x86_64 1.55.1-4.fc39 updates 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc39 fedora 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-4.fc39 updates 862 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-0.fc39 updates 94 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc39 fedora 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.5-4.fc39 fedora 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-7.20230520.fc39 fedora 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc39 fedora 2.2 M p11-kit x86_64 0.25.2-1.fc39 updates 520 k p11-kit-trust x86_64 0.25.2-1.fc39 updates 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc39 fedora 57 k pyproject-srpm-macros noarch 1.10.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-4.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc39 updates 8.3 k qt6-srpm-macros noarch 6.6.0-1.fc39 updates 8.6 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.19.0-1.fc39 fedora 538 k rpm-build-libs x86_64 4.19.0-1.fc39 fedora 96 k rpm-libs x86_64 4.19.0-1.fc39 fedora 312 k rpm-sequoia x86_64 1.5.0-1.fc39 fedora 871 k rpmautospec-rpm-macros noarch 0.3.5-4.fc39 fedora 8.8 k rust-srpm-macros noarch 25.2-2.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.5-2.fc39 fedora 689 k util-linux-core x86_64 2.39.2-1.fc39 fedora 494 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.5-4.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 151 Packages Total size: 52 M Installed size: 178 M Downloading Packages: [SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] binutils-2.40-13.fc39.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.40-13.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.3-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.3-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.14-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] curl-8.2.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-39-1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-39-30.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-39-30.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-39-30.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-39-1.noarch.rpm: Already downloaded [SKIPPED] file-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-2.fc39.noarch.rpm: Already downloaded [SKIPPED] gmp-6.2.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-3.fc39.noarch.rpm: Already downloaded [SKIPPED] grep-3.11-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] info-7.0.3-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-20.fc39.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.7.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.39.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.47.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libcurl-8.2.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-56.fc39.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.5.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] 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Running transaction test Transaction test succeeded. 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info-7.0.3-3.fc39.x86_64 151/151 Running scriptlet: filesystem-3.18-6.fc39.x86_64 151/151 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 151/151 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 151/151 Running scriptlet: rpm-4.19.0-1.fc39.x86_64 151/151 Running scriptlet: info-7.0.3-3.fc39.x86_64 151/151 Verifying : alternatives-1.25-1.fc39.x86_64 1/151 Verifying : ansible-srpm-macros-1-11.fc39.noarch 2/151 Verifying : audit-libs-3.1.2-4.fc39.x86_64 3/151 Verifying : authselect-1.4.3-1.fc39.x86_64 4/151 Verifying : authselect-libs-1.4.3-1.fc39.x86_64 5/151 Verifying : basesystem-11-18.fc39.noarch 6/151 Verifying : binutils-2.40-13.fc39.x86_64 7/151 Verifying : binutils-gold-2.40-13.fc39.x86_64 8/151 Verifying : bzip2-1.0.8-16.fc39.x86_64 9/151 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 10/151 Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 11/151 Verifying : coreutils-9.3-4.fc39.x86_64 12/151 Verifying : coreutils-common-9.3-4.fc39.x86_64 13/151 Verifying : cpio-2.14-4.fc39.x86_64 14/151 Verifying : cracklib-2.9.11-2.fc39.x86_64 15/151 Verifying : curl-8.2.1-3.fc39.x86_64 16/151 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 17/151 Verifying : debugedit-5.0-10.fc39.x86_64 18/151 Verifying : diffutils-3.10-3.fc39.x86_64 19/151 Verifying : dwz-0.15-3.fc39.x86_64 20/151 Verifying : ed-1.19-4.fc39.x86_64 21/151 Verifying : efi-srpm-macros-5-9.fc39.noarch 22/151 Verifying : fedora-gpg-keys-39-1.noarch 23/151 Verifying : fedora-release-39-30.noarch 24/151 Verifying : fedora-release-common-39-30.noarch 25/151 Verifying : fedora-release-identity-basic-39-30.noarch 26/151 Verifying : fedora-repos-39-1.noarch 27/151 Verifying : file-5.44-5.fc39.x86_64 28/151 Verifying : file-libs-5.44-5.fc39.x86_64 29/151 Verifying : filesystem-3.18-6.fc39.x86_64 30/151 Verifying : findutils-1:4.9.0-5.fc39.x86_64 31/151 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 32/151 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 33/151 Verifying : gawk-5.2.2-2.fc39.x86_64 34/151 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 35/151 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 36/151 Verifying : gmp-1:6.2.1-5.fc39.x86_64 37/151 Verifying : gnat-srpm-macros-6-3.fc39.noarch 38/151 Verifying : grep-3.11-3.fc39.x86_64 39/151 Verifying : gzip-1.12-6.fc39.x86_64 40/151 Verifying : info-7.0.3-3.fc39.x86_64 41/151 Verifying : jansson-2.13.1-7.fc39.x86_64 42/151 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 43/151 Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 44/151 Verifying : libacl-2.3.1-8.fc39.x86_64 45/151 Verifying : libarchive-3.7.1-1.fc39.x86_64 46/151 Verifying : libattr-2.5.1-8.fc39.x86_64 47/151 Verifying : libblkid-2.39.2-1.fc39.x86_64 48/151 Verifying : libbrotli-1.1.0-1.fc39.x86_64 49/151 Verifying : libcap-2.48-7.fc39.x86_64 50/151 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 51/151 Verifying : libcom_err-1.47.0-2.fc39.x86_64 52/151 Verifying : libcurl-8.2.1-3.fc39.x86_64 53/151 Verifying : libdb-5.3.28-56.fc39.x86_64 54/151 Verifying : libeconf-0.5.2-1.fc39.x86_64 55/151 Verifying : libevent-2.1.12-9.fc39.x86_64 56/151 Verifying : libfdisk-2.39.2-1.fc39.x86_64 57/151 Verifying : libffi-3.4.4-4.fc39.x86_64 58/151 Verifying : libidn2-2.3.4-3.fc39.x86_64 59/151 Verifying : libmount-2.39.2-1.fc39.x86_64 60/151 Verifying : libnsl2-2.0.0-6.fc39.x86_64 61/151 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 62/151 Verifying : libpsl-0.21.2-4.fc39.x86_64 63/151 Verifying : libpwquality-1.4.5-6.fc39.x86_64 64/151 Verifying : libselinux-3.5-5.fc39.x86_64 65/151 Verifying : libsemanage-3.5-4.fc39.x86_64 66/151 Verifying : libsepol-3.5-2.fc39.x86_64 67/151 Verifying : libsigsegv-2.14-5.fc39.x86_64 68/151 Verifying : libsmartcols-2.39.2-1.fc39.x86_64 69/151 Verifying : libssh-0.10.5-2.fc39.x86_64 70/151 Verifying : libssh-config-0.10.5-2.fc39.noarch 71/151 Verifying : libtasn1-4.19.0-3.fc39.x86_64 72/151 Verifying : libunistring-1.1-5.fc39.x86_64 73/151 Verifying : libutempter-1.2.1-10.fc39.x86_64 74/151 Verifying : libuuid-2.39.2-1.fc39.x86_64 75/151 Verifying : libverto-0.3.2-6.fc39.x86_64 76/151 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 77/151 Verifying : libxml2-2.10.4-3.fc39.x86_64 78/151 Verifying : libzstd-1.5.5-4.fc39.x86_64 79/151 Verifying : lua-libs-5.4.6-3.fc39.x86_64 80/151 Verifying : lua-srpm-macros-1-9.fc39.noarch 81/151 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 82/151 Verifying : mpfr-4.2.0-3.fc39.x86_64 83/151 Verifying : ncurses-base-6.4-7.20230520.fc39.noarch 84/151 Verifying : ncurses-libs-6.4-7.20230520.fc39.x86_64 85/151 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 86/151 Verifying : openblas-srpm-macros-2-14.fc39.noarch 87/151 Verifying : openldap-2.6.6-1.fc39.x86_64 88/151 Verifying : openssl-libs-1:3.1.1-4.fc39.x86_64 89/151 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 90/151 Verifying : patch-2.7.6-22.fc39.x86_64 91/151 Verifying : pcre2-10.42-1.fc39.2.x86_64 92/151 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 93/151 Verifying : perl-srpm-macros-1-51.fc39.noarch 94/151 Verifying : pkgconf-1.9.5-2.fc39.x86_64 95/151 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 96/151 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 97/151 Verifying : popt-1.19-3.fc39.x86_64 98/151 Verifying : publicsuffix-list-dafsa-20230812-1.fc39.noarch 99/151 Verifying : python-srpm-macros-3.12-4.fc39.noarch 100/151 Verifying : readline-8.2-4.fc39.x86_64 101/151 Verifying : redhat-rpm-config-262-1.fc39.noarch 102/151 Verifying : rpm-4.19.0-1.fc39.x86_64 103/151 Verifying : rpm-build-4.19.0-1.fc39.x86_64 104/151 Verifying : rpm-build-libs-4.19.0-1.fc39.x86_64 105/151 Verifying : rpm-libs-4.19.0-1.fc39.x86_64 106/151 Verifying : rpm-sequoia-1.5.0-1.fc39.x86_64 107/151 Verifying : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 108/151 Verifying : sed-4.8-14.fc39.x86_64 109/151 Verifying : setup-2.14.4-1.fc39.noarch 110/151 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 111/151 Verifying : systemd-libs-254.5-2.fc39.x86_64 112/151 Verifying : tar-2:1.35-2.fc39.x86_64 113/151 Verifying : unzip-6.0-62.fc39.x86_64 114/151 Verifying : util-linux-2.39.2-1.fc39.x86_64 115/151 Verifying : util-linux-core-2.39.2-1.fc39.x86_64 116/151 Verifying : which-2.21-40.fc39.x86_64 117/151 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 118/151 Verifying : xz-5.4.4-1.fc39.x86_64 119/151 Verifying : xz-libs-5.4.4-1.fc39.x86_64 120/151 Verifying : zip-3.0-39.fc39.x86_64 121/151 Verifying : zlib-1.2.13-4.fc39.x86_64 122/151 Verifying : zstd-1.5.5-4.fc39.x86_64 123/151 Verifying : bash-5.2.21-1.fc39.x86_64 124/151 Verifying : crypto-policies-20231113-1.gitb402e82.fc39.noarc 125/151 Verifying : elfutils-0.190-1.fc39.x86_64 126/151 Verifying : elfutils-debuginfod-client-0.190-1.fc39.x86_64 127/151 Verifying : elfutils-default-yama-scope-0.190-1.fc39.noarch 128/151 Verifying : elfutils-libelf-0.190-1.fc39.x86_64 129/151 Verifying : elfutils-libs-0.190-1.fc39.x86_64 130/151 Verifying : gdb-minimal-13.2-10.fc39.x86_64 131/151 Verifying : glibc-2.38-10.fc39.x86_64 132/151 Verifying : glibc-common-2.38-10.fc39.x86_64 133/151 Verifying : glibc-gconv-extra-2.38-10.fc39.x86_64 134/151 Verifying : glibc-minimal-langpack-2.38-10.fc39.x86_64 135/151 Verifying : go-srpm-macros-3.3.1-1.fc39.noarch 136/151 Verifying : krb5-libs-1.21.2-2.fc39.x86_64 137/151 Verifying : libgcc-13.2.1-4.fc39.x86_64 138/151 Verifying : libgomp-13.2.1-4.fc39.x86_64 139/151 Verifying : libnghttp2-1.55.1-4.fc39.x86_64 140/151 Verifying : libstdc++-13.2.1-4.fc39.x86_64 141/151 Verifying : libtirpc-1.3.4-0.fc39.x86_64 142/151 Verifying : p11-kit-0.25.2-1.fc39.x86_64 143/151 Verifying : p11-kit-trust-0.25.2-1.fc39.x86_64 144/151 Verifying : pam-1.5.3-3.fc39.x86_64 145/151 Verifying : pam-libs-1.5.3-3.fc39.x86_64 146/151 Verifying : pyproject-srpm-macros-1.10.0-1.fc39.noarch 147/151 Verifying : qt5-srpm-macros-5.15.11-1.fc39.noarch 148/151 Verifying : qt6-srpm-macros-6.6.0-1.fc39.noarch 149/151 Verifying : rust-srpm-macros-25.2-2.fc39.noarch 150/151 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 151/151 Installed products updated. Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-1.fc39.x86_64 binutils-2.40-13.fc39.x86_64 binutils-gold-2.40-13.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-4.fc39.x86_64 coreutils-common-9.3-4.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc39.noarch curl-8.2.1-3.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-1.fc39.x86_64 elfutils-debuginfod-client-0.190-1.fc39.x86_64 elfutils-default-yama-scope-0.190-1.fc39.noarch elfutils-libelf-0.190-1.fc39.x86_64 elfutils-libs-0.190-1.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-30.noarch fedora-release-common-39-30.noarch fedora-release-identity-basic-39-30.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-10.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-10.fc39.x86_64 glibc-common-2.38-10.fc39.x86_64 glibc-gconv-extra-2.38-10.fc39.x86_64 glibc-minimal-langpack-2.38-10.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc39.x86_64 libacl-2.3.1-8.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.2-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-3.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-1.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-4.fc39.x86_64 libgomp-13.2.1-4.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc39.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-4.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.noarch ncurses-libs-6.4-7.20230520.fc39.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc39.x86_64 p11-kit-0.25.2-1.fc39.x86_64 p11-kit-trust-0.25.2-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc39.noarch pyproject-srpm-macros-1.10.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.11-1.fc39.noarch qt6-srpm-macros-6.6.0-1.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-262-1.fc39.noarch rpm-4.19.0-1.fc39.x86_64 rpm-build-4.19.0-1.fc39.x86_64 rpm-build-libs-4.19.0-1.fc39.x86_64 rpm-libs-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-4.fc39.noarch rust-srpm-macros-25.2-2.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.5-2.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc39.x86_64 util-linux-core-2.39.2-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-1.fc39.x86_64 binutils-2.40-13.fc39.x86_64 binutils-gold-2.40-13.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-4.fc39.x86_64 coreutils-common-9.3-4.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc39.noarch curl-8.2.1-3.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-1.fc39.x86_64 elfutils-debuginfod-client-0.190-1.fc39.x86_64 elfutils-default-yama-scope-0.190-1.fc39.noarch elfutils-libelf-0.190-1.fc39.x86_64 elfutils-libs-0.190-1.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-30.noarch fedora-release-common-39-30.noarch fedora-release-identity-basic-39-30.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-5.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-10.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-10.fc39.x86_64 glibc-common-2.38-10.fc39.x86_64 glibc-gconv-extra-2.38-10.fc39.x86_64 glibc-minimal-langpack-2.38-10.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc39.x86_64 libacl-2.3.1-8.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.2-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-3.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-1.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-4.fc39.x86_64 libgomp-13.2.1-4.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc39.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-4.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.noarch ncurses-libs-6.4-7.20230520.fc39.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc39.x86_64 p11-kit-0.25.2-1.fc39.x86_64 p11-kit-trust-0.25.2-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc39.noarch pyproject-srpm-macros-1.10.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.11-1.fc39.noarch qt6-srpm-macros-6.6.0-1.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-262-1.fc39.noarch rpm-4.19.0-1.fc39.x86_64 rpm-build-4.19.0-1.fc39.x86_64 rpm-build-libs-4.19.0-1.fc39.x86_64 rpm-libs-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-4.fc39.noarch rust-srpm-macros-25.2-2.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.5-2.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc39.x86_64 util-linux-core-2.39.2-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1700317982.767386/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1700317982.767386/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1700317982.767386/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-r2semll9/R-CRAN-diversityForest/R-CRAN-diversityForest.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1700317982.767386/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.18.1-3.fc38.x86_64 rpm-sequoia-1.4.0-3.fc38.x86_64 python3-dnf-4.18.1-1.fc38.noarch python3-dnf-plugins-core-4.4.3-1.fc38.noarch yum-4.18.1-1.fc38.noarch Start: build phase for R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm Start: build setup for R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 25 kB/s | 1.5 kB 00:00 Copr repository 8.9 MB/s | 26 MB 00:02 fedora 519 kB/s | 23 kB 00:00 updates 305 kB/s | 13 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-MapGAM noarch 1.3-1.fc39.copr6290228 copr_base 1.5 M R-CRAN-Matrix x86_64 1.6.3-1.fc39.copr6636945 copr_base 4.1 M R-CRAN-RColorBrewer noarch 1.1.3-1.fc39.copr6279333 copr_base 65 k R-CRAN-Rcpp x86_64 1.0.11-1.fc39.copr6279302 copr_base 2.0 M R-CRAN-RcppEigen x86_64 0.3.3.9.4-1.fc39.copr6596539 copr_base 1.2 M R-CRAN-gam x86_64 1.22.2-1.fc39.copr6285250 copr_base 341 k R-CRAN-ggplot2 noarch 3.4.4-1.fc39.copr6524688 copr_base 4.2 M R-CRAN-ggpubr noarch 0.6.0-1.fc39.copr6298934 copr_base 2.1 M R-CRAN-nnet x86_64 7.3.19-1.fc39.copr6282082 copr_base 130 k R-CRAN-rlang x86_64 1.1.2-1.fc39.copr6598950 copr_base 1.6 M R-CRAN-rms x86_64 6.7.1-1.fc39.copr6398689 copr_base 2.3 M R-CRAN-scales noarch 1.2.1-1.fc39.copr6285210 copr_base 638 k R-CRAN-sgeostat x86_64 1.0.27-3.fc39.copr6280864 copr_base 166 k R-CRAN-survival x86_64 3.5.7-1.fc39.copr6665187 copr_base 6.0 M R-core x86_64 4.3.2-1.fc39 updates 64 M R-devel x86_64 4.3.2-1.fc39 updates 10 k Installing dependencies: R-CRAN-DBI noarch 1.1.3-1.fc39.copr6279368 copr_base 752 k R-CRAN-Formula noarch 1.2.5-1.fc39.copr6279389 copr_base 169 k R-CRAN-Hmisc x86_64 5.1.1-1.fc39.copr6398654 copr_base 3.7 M R-CRAN-KernSmooth x86_64 2.23.22-1.fc39.copr6282079 copr_base 108 k R-CRAN-MASS x86_64 7.3.60-1.fc39.copr6282081 copr_base 1.2 M R-CRAN-MatrixModels noarch 0.5.3-1.fc39.copr6664804 copr_base 377 k R-CRAN-PBSmapping x86_64 2.73.4-1.fc39.copr6598947 copr_base 4.5 M R-CRAN-R6 noarch 2.5.1-1.fc39.copr6279323 copr_base 96 k R-CRAN-SparseM x86_64 1.81-1.fc39.copr6279449 copr_base 964 k R-CRAN-TH.data noarch 1.1.2-1.fc39.copr6286827 copr_base 8.4 M R-CRAN-abind noarch 1.4.5-3.fc39.copr6279306 copr_base 78 k R-CRAN-backports x86_64 1.4.1-1.fc39.copr6279307 copr_base 120 k R-CRAN-base64enc x86_64 0.1.3-3.fc39.copr6279336 copr_base 40 k R-CRAN-boot noarch 1.3.28.1-1.fc39.copr6282075 copr_base 700 k R-CRAN-broom noarch 1.0.5-1.fc39.copr6293263 copr_base 1.9 M R-CRAN-bslib noarch 0.5.1-1.fc39.copr6289601 copr_base 4.9 M R-CRAN-cachem x86_64 1.0.8-1.fc39.copr6284664 copr_base 82 k R-CRAN-car noarch 3.1.2-1.fc39.copr6298365 copr_base 1.8 M R-CRAN-carData noarch 3.0.5-1.fc39.copr6279358 copr_base 1.8 M R-CRAN-checkmate x86_64 2.3.0-1.fc39.copr6565979 copr_base 747 k R-CRAN-class x86_64 7.3.22-1.fc39.copr6284602 copr_base 107 k R-CRAN-classInt x86_64 0.4.10-1.fc39.copr6375003 copr_base 490 k R-CRAN-cli x86_64 3.6.1-1.fc39.copr6279347 copr_base 1.3 M R-CRAN-cluster x86_64 2.1.4-1.fc39.copr6282076 copr_base 620 k R-CRAN-codetools noarch 0.2.19-1.fc39.copr6282077 copr_base 103 k R-CRAN-colorspace x86_64 2.1.0-1.fc39.copr6279338 copr_base 2.4 M R-CRAN-corrplot noarch 0.92-1.fc39.copr6279364 copr_base 3.7 M R-CRAN-cowplot noarch 1.1.1-1.fc39.copr6291051 copr_base 1.3 M R-CRAN-data.table x86_64 1.14.8-1.fc39.copr6279367 copr_base 1.9 M R-CRAN-digest x86_64 0.6.33-1.fc39.copr6279309 copr_base 216 k R-CRAN-dplyr x86_64 1.1.3-1.fc39.copr6368767 copr_base 1.5 M R-CRAN-e1071 x86_64 1.7.13-1.fc39.copr6285216 copr_base 619 k R-CRAN-ellipsis x86_64 0.3.2-1.fc39.copr6282869 copr_base 49 k R-CRAN-evaluate noarch 0.23-1.fc39.copr6589765 copr_base 97 k R-CRAN-fansi x86_64 1.0.5-1.fc39.copr6506680 copr_base 339 k R-CRAN-farver x86_64 2.1.1-1.fc39.copr6279385 copr_base 1.3 M R-CRAN-fastmap x86_64 1.1.1-1.fc39.copr6280214 copr_base 78 k R-CRAN-fontawesome noarch 0.5.2-1.fc39.copr6319288 copr_base 1.3 M R-CRAN-foreach noarch 1.5.2-1.fc39.copr6282916 copr_base 143 k R-CRAN-foreign x86_64 0.8.85-1.fc39.copr6390858 copr_base 270 k R-CRAN-fs x86_64 1.6.3-1.fc39.copr6279390 copr_base 312 k R-CRAN-generics noarch 0.1.3-1.fc39.copr6279393 copr_base 100 k R-CRAN-ggrepel x86_64 0.9.4-1.fc39.copr6524704 copr_base 269 k R-CRAN-ggsci noarch 3.0.0-1.fc39.copr6291050 copr_base 2.1 M R-CRAN-ggsignif noarch 0.6.4-1.fc39.copr6291052 copr_base 564 k R-CRAN-glue x86_64 1.6.2-1.fc39.copr6279303 copr_base 162 k R-CRAN-gridExtra noarch 2.3-3.fc39.copr6286811 copr_base 1.0 M R-CRAN-gtable noarch 0.3.4-1.fc39.copr6523581 copr_base 231 k R-CRAN-highr noarch 0.10-1.fc39.copr6282892 copr_base 51 k R-CRAN-htmlTable noarch 2.4.2-1.fc39.copr6579455 copr_base 418 k R-CRAN-htmltools x86_64 0.5.7-1.fc39.copr6596515 copr_base 385 k R-CRAN-htmlwidgets noarch 1.6.2-1.fc39.copr6290980 copr_base 426 k R-CRAN-isoband x86_64 0.2.7-1.fc39.copr6280488 copr_base 1.6 M R-CRAN-iterators noarch 1.0.14-1.fc39.copr6279403 copr_base 348 k R-CRAN-jquerylib noarch 0.1.4-1.fc39.copr6287868 copr_base 301 k R-CRAN-jsonlite x86_64 1.8.7-1.fc39.copr6279319 copr_base 637 k R-CRAN-knitr noarch 1.45-1.fc39.copr6583452 copr_base 1.3 M R-CRAN-labeling noarch 0.4.3-1.fc39.copr6354313 copr_base 77 k R-CRAN-lattice x86_64 0.22.5-1.fc39.copr6562879 copr_base 1.4 M R-CRAN-lifecycle noarch 1.0.4-1.fc39.copr6614518 copr_base 130 k R-CRAN-lme4 x86_64 1.1.35.1-1.fc39.copr6664800 copr_base 4.1 M R-CRAN-magrittr x86_64 2.0.3-1.fc39.copr6279321 copr_base 222 k R-CRAN-memoise noarch 2.0.1-1.fc39.copr6285223 copr_base 63 k R-CRAN-mgcv x86_64 1.9.0-1.fc39.copr6665186 copr_base 3.3 M R-CRAN-mime x86_64 0.12-1.fc39.copr6279326 copr_base 46 k R-CRAN-minqa x86_64 1.2.6-1.fc39.copr6395773 copr_base 125 k R-CRAN-multcomp noarch 1.4.25-1.fc39.copr6288612 copr_base 728 k R-CRAN-munsell noarch 0.5.0-3.fc39.copr6282866 copr_base 251 k R-CRAN-mvtnorm x86_64 1.2.3-1.fc39.copr6344043 copr_base 743 k R-CRAN-nlme x86_64 3.1.163-1.fc39.copr6284604 copr_base 2.4 M R-CRAN-nloptr x86_64 2.0.3-1.fc39.copr6295244 copr_base 700 k R-CRAN-numDeriv noarch 2016.8.1.1-3.fc39.copr6279422 copr_base 128 k R-CRAN-pbkrtest noarch 0.5.2-1.fc39.copr6665412 copr_base 208 k R-CRAN-pillar noarch 1.9.0-1.fc39.copr6286818 copr_base 626 k R-CRAN-pkgconfig noarch 2.0.3-3.fc39.copr6279322 copr_base 30 k R-CRAN-polspline x86_64 1.1.24-1.fc39.copr6568798 copr_base 619 k R-CRAN-polynom noarch 1.4.1-1.fc39.copr6279430 copr_base 399 k R-CRAN-proxy x86_64 0.4.27-1.fc39.copr6279833 copr_base 189 k R-CRAN-purrr x86_64 1.0.2-1.fc39.copr6286812 copr_base 546 k R-CRAN-quantreg x86_64 5.97-1.fc39.copr6665413 copr_base 1.6 M R-CRAN-rappdirs x86_64 0.3.3-1.fc39.copr6279439 copr_base 60 k R-CRAN-rmarkdown noarch 2.25-1.fc39.copr6416123 copr_base 2.0 M R-CRAN-rpart x86_64 4.1.21-1.fc39.copr6511630 copr_base 701 k R-CRAN-rstatix noarch 0.7.2-1.fc39.copr6298750 copr_base 659 k R-CRAN-rstudioapi noarch 0.15.0-1.fc39.copr6279330 copr_base 338 k R-CRAN-s2 x86_64 1.1.4-1.fc39.copr6284181 copr_base 1.9 M R-CRAN-sandwich noarch 3.0.2-1.fc39.copr6285229 copr_base 1.4 M R-CRAN-sass x86_64 0.4.7-1.fc39.copr6287680 copr_base 2.1 M R-CRAN-sf x86_64 1.0.14-1.fc39.copr6288623 copr_base 3.0 M R-CRAN-sp x86_64 2.1.1-1.fc39.copr6534604 copr_base 1.8 M R-CRAN-stringi x86_64 1.8.1-1.fc39.copr6631343 copr_base 992 k R-CRAN-stringr noarch 1.5.1-1.fc39.copr6636964 copr_base 319 k R-CRAN-tibble x86_64 3.2.1-1.fc39.copr6288598 copr_base 632 k R-CRAN-tidyr x86_64 1.3.0-1.fc39.copr6290987 copr_base 1.1 M R-CRAN-tidyselect noarch 1.2.0-1.fc39.copr6286814 copr_base 232 k R-CRAN-tinytex noarch 0.48-1.fc39.copr6524679 copr_base 153 k R-CRAN-units x86_64 0.8.4-1.fc39.copr6401676 copr_base 355 k R-CRAN-utf8 x86_64 1.2.4-1.fc39.copr6555966 copr_base 150 k R-CRAN-vctrs x86_64 0.6.4-1.fc39.copr6524681 copr_base 1.3 M R-CRAN-viridis noarch 0.6.4-1.fc39.copr6290988 copr_base 2.9 M R-CRAN-viridisLite noarch 0.4.2-1.fc39.copr6279312 copr_base 1.2 M R-CRAN-withr noarch 2.5.2-1.fc39.copr6583488 copr_base 255 k R-CRAN-wk x86_64 0.9.0-1.fc39.copr6555967 copr_base 1.7 M R-CRAN-xfun x86_64 0.41-1.fc39.copr6589789 copr_base 476 k R-CRAN-yaml x86_64 2.3.7-1.fc39.copr6279331 copr_base 121 k R-CRAN-zoo x86_64 1.8.12-1.fc39.copr6282861 copr_base 1.0 M R-core-devel x86_64 4.3.2-1.fc39 updates 93 k R-java x86_64 4.3.2-1.fc39 updates 11 k R-java-devel x86_64 4.3.2-1.fc39 updates 10 k R-littler x86_64 0.3.18-4.fc39 fedora 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k SuperLU x86_64 6.0.0-1.fc39 fedora 186 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.10-3.fc39 fedora 522 k annobin-docs noarch 12.30-1.fc39 updates 92 k annobin-plugin-gcc x86_64 12.30-1.fc39 updates 959 k armadillo x86_64 10.8.2-5.fc39 fedora 34 k arpack x86_64 3.9.1-1.fc39 updates 210 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k blosc x86_64 1.21.4-2.fc39 fedora 59 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cfitsio x86_64 4.3.0-1.fc39 fedora 606 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-4.fc39 updates 11 M crypto-policies-scripts noarch 20231113-1.gitb402e82.fc39 updates 117 k cups-libs x86_64 1:2.4.7-2.fc39 updates 269 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.1-2.fc39 fedora 7.1 k expat x86_64 2.5.0-3.fc39 fedora 110 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-devel x86_64 3.3.1-5.fc39 fedora 117 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-netlib64 x86_64 3.3.1-5.fc39 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-5.fc39 fedora 17 k fontconfig x86_64 2.14.2-5.fc39 fedora 297 k fontconfig-devel x86_64 2.14.2-5.fc39 fedora 165 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k freexl x86_64 2.0.0-2.fc39 fedora 45 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-4.fc39 updates 34 M gcc-c++ x86_64 13.2.1-4.fc39 updates 13 M gcc-gfortran x86_64 13.2.1-4.fc39 updates 12 M gcc-plugin-annobin x86_64 13.2.1-4.fc39 updates 48 k gdal-libs x86_64 3.7.3-1.fc39 updates 8.4 M geos x86_64 3.12.0-2.fc39 fedora 1.1 M gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k giflib x86_64 5.2.1-17.fc39 fedora 51 k glib2 x86_64 2.78.1-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.1-1.fc39 updates 595 k glibc-devel x86_64 2.38-10.fc39 updates 85 k glibc-headers-x86 noarch 2.38-10.fc39 updates 568 k gnutls x86_64 3.8.1-1.fc39 fedora 1.1 M google-noto-fonts-common noarch 20230801-4.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20230801-4.fc39 updates 583 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k hdf-libs x86_64 4.2.15-13.fc39 fedora 295 k hdf5 x86_64 1.12.1-12.fc39 fedora 2.2 M imath x86_64 3.1.9-3.fc39 fedora 96 k java-17-openjdk x86_64 1:17.0.8.0.7-1.fc39 fedora 407 k java-17-openjdk-devel x86_64 1:17.0.8.0.7-1.fc39 fedora 4.7 M java-17-openjdk-headless x86_64 1:17.0.8.0.7-1.fc39 fedora 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k json-c x86_64 0.17-1.fc39 fedora 43 k kernel-headers x86_64 6.5.4-300.fc39 fedora 1.5 M lcms2 x86_64 2.15-2.fc39 fedora 177 k libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.2-1.fc39 updates 122 k libRmath-devel x86_64 4.3.2-1.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.7-1.fc39 fedora 650 k libX11-common noarch 1.8.7-1.fc39 fedora 176 k libX11-devel x86_64 1.8.7-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.7-1.fc39 fedora 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libaec x86_64 1.0.6-5.fc39 fedora 42 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.2-1.fc39 fedora 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgeotiff x86_64 1.7.1-9.fc39 fedora 106 k libgfortran x86_64 13.2.1-4.fc39 updates 900 k libgta x86_64 1.2.1-10.fc39 fedora 35 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k libkml x86_64 1.3.0-45.fc39 fedora 358 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.2-1.fc39 fedora 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libpq x86_64 15.3-1.fc39 fedora 215 k libqhull_r x86_64 1:7.2.1-13.fc39 fedora 167 k libquadmath x86_64 13.2.1-4.fc39 updates 196 k libquadmath-devel x86_64 13.2.1-4.fc39 updates 38 k librttopo x86_64 1.1.0-12.fc39 fedora 207 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libspatialite x86_64 5.0.1-23.fc39 fedora 3.1 M libstdc++-devel x86_64 13.2.1-4.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.4-0.fc39 updates 125 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mariadb-connector-c x86_64 3.3.5-2.fc39 fedora 208 k mariadb-connector-c-config noarch 3.3.5-2.fc39 fedora 8.8 k metis x86_64 5.1.0.3-2.fc39 fedora 572 k minizip-ng x86_64 3.0.7-4.fc39 fedora 70 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k netcdf x86_64 4.9.0-5.fc38 fedora 833 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-14.fc39 fedora 136 k nss x86_64 3.94.0-2.fc39 fedora 693 k nss-softokn x86_64 3.94.0-2.fc39 fedora 411 k nss-softokn-freebl x86_64 3.94.0-2.fc39 fedora 348 k nss-sysinit x86_64 3.94.0-2.fc39 fedora 18 k nss-util x86_64 3.94.0-2.fc39 fedora 87 k ogdi x86_64 4.1.0-11.fc39 fedora 245 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M openexr-libs x86_64 3.1.10-2.fc39 fedora 1.1 M openjpeg2 x86_64 2.5.0-5.fc39 fedora 178 k pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k poppler x86_64 23.08.0-1.fc39 fedora 1.2 M poppler-data noarch 0.4.11-5.fc39 fedora 2.0 M proj x86_64 9.2.1-2.fc39 fedora 1.5 M proj-data noarch 9.2.1-2.fc39 fedora 1.3 M python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python3 x86_64 3.12.0-1.fc39 fedora 26 k python3-libs x86_64 3.12.0-1.fc39 fedora 9.2 M python3-setuptools noarch 67.7.2-7.fc39 fedora 1.5 M snappy x86_64 1.1.10-2.fc39 fedora 37 k sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2023c-2.fc39 fedora 717 k tzdata-java noarch 2023c-2.fc39 fedora 208 k udunits2 x86_64 2.2.28-8.fc39 fedora 634 k unixODBC x86_64 2.3.11-4.fc39 fedora 482 k uriparser x86_64 0.9.7-3.fc39 fedora 60 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xerces-c x86_64 3.2.3-9.fc39 fedora 960 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ======================================================================================== Install 315 Packages Total size: 427 M Total download size: 152 M Installed size: 1.2 G Downloading Packages: [SKIPPED] R-CRAN-Matrix-1.6.3-1.fc39.copr6636945.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-cli-3.6.1-1.fc39.copr6279347.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-glue-1.6.2-1.fc39.copr6279303.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lattice-0.22.5-1.fc39.copr6562879.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-rlang-1.1.2-1.fc39.copr6598950.x86_64.rpm: Already downloaded [SKIPPED] R-rpm-macros-1.2.1-7.fc39.noarch.rpm: Already downloaded [SKIPPED] abattis-cantarell-vf-fonts-0.301-10.fc39.noarch.rpm: Already downloaded [SKIPPED] alsa-lib-1.2.10-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] avahi-libs-0.8-24.fc39.x86_64.rpm: Already downloaded [SKIPPED] brotli-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] brotli-devel-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-devel-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.18.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.7-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] copy-jdk-configs-4.1-3.fc39.noarch.rpm: Already downloaded [SKIPPED] dbus-libs-1.14.10-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] default-fonts-core-sans-4.0-9.fc39.noarch.rpm: Already downloaded [SKIPPED] desktop-file-utils-0.26-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] emacs-filesystem-29.1-2.fc39.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-devel-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.3.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib64-3.3.1-5.fc39.x86_64.rpm: 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graphite2-1.3.14-12.fc39.x86_64.rpm: Already downloaded [SKIPPED] graphite2-devel-1.3.14-12.fc39.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-8.2.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-devel-8.2.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-icu-8.2.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-17.0.8.0.7-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-devel-17.0.8.0.7-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-headless-17.0.8.0.7-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] javapackages-filesystem-6.1.0-10.fc39.noarch.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-26.fc39.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-6.5.4-300.fc39.x86_64.rpm: Already downloaded [SKIPPED] libICE-1.0.10-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] libSM-1.2.3-13.fc39.x86_64.rpm: Already downloaded [SKIPPED] 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Running transaction test Transaction test succeeded. 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R-CRAN-minqa-1.2.6-1.fc39.copr6395773.x86_64 74/315 Verifying : R-CRAN-multcomp-1.4.25-1.fc39.copr6288612.noarch 75/315 Verifying : R-CRAN-munsell-0.5.0-3.fc39.copr6282866.noarch 76/315 Verifying : R-CRAN-mvtnorm-1.2.3-1.fc39.copr6344043.x86_64 77/315 Verifying : R-CRAN-nlme-3.1.163-1.fc39.copr6284604.x86_64 78/315 Verifying : R-CRAN-nloptr-2.0.3-1.fc39.copr6295244.x86_64 79/315 Verifying : R-CRAN-nnet-7.3.19-1.fc39.copr6282082.x86_64 80/315 Verifying : R-CRAN-numDeriv-2016.8.1.1-3.fc39.copr6279422.no 81/315 Verifying : R-CRAN-pbkrtest-0.5.2-1.fc39.copr6665412.noarch 82/315 Verifying : R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch 83/315 Verifying : R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch 84/315 Verifying : R-CRAN-polspline-1.1.24-1.fc39.copr6568798.x86_6 85/315 Verifying : R-CRAN-polynom-1.4.1-1.fc39.copr6279430.noarch 86/315 Verifying : R-CRAN-proxy-0.4.27-1.fc39.copr6279833.x86_64 87/315 Verifying : R-CRAN-purrr-1.0.2-1.fc39.copr6286812.x86_64 88/315 Verifying : R-CRAN-quantreg-5.97-1.fc39.copr6665413.x86_64 89/315 Verifying : R-CRAN-rappdirs-0.3.3-1.fc39.copr6279439.x86_64 90/315 Verifying : R-CRAN-rlang-1.1.2-1.fc39.copr6598950.x86_64 91/315 Verifying : R-CRAN-rmarkdown-2.25-1.fc39.copr6416123.noarch 92/315 Verifying : R-CRAN-rms-6.7.1-1.fc39.copr6398689.x86_64 93/315 Verifying : R-CRAN-rpart-4.1.21-1.fc39.copr6511630.x86_64 94/315 Verifying : R-CRAN-rstatix-0.7.2-1.fc39.copr6298750.noarch 95/315 Verifying : R-CRAN-rstudioapi-0.15.0-1.fc39.copr6279330.noar 96/315 Verifying : R-CRAN-s2-1.1.4-1.fc39.copr6284181.x86_64 97/315 Verifying : R-CRAN-sandwich-3.0.2-1.fc39.copr6285229.noarch 98/315 Verifying : R-CRAN-sass-0.4.7-1.fc39.copr6287680.x86_64 99/315 Verifying : R-CRAN-scales-1.2.1-1.fc39.copr6285210.noarch 100/315 Verifying : R-CRAN-sf-1.0.14-1.fc39.copr6288623.x86_64 101/315 Verifying : R-CRAN-sgeostat-1.0.27-3.fc39.copr6280864.x86_64 102/315 Verifying : R-CRAN-sp-2.1.1-1.fc39.copr6534604.x86_64 103/315 Verifying : R-CRAN-stringi-1.8.1-1.fc39.copr6631343.x86_64 104/315 Verifying : R-CRAN-stringr-1.5.1-1.fc39.copr6636964.noarch 105/315 Verifying : R-CRAN-survival-3.5.7-1.fc39.copr6665187.x86_64 106/315 Verifying : R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 107/315 Verifying : R-CRAN-tidyr-1.3.0-1.fc39.copr6290987.x86_64 108/315 Verifying : R-CRAN-tidyselect-1.2.0-1.fc39.copr6286814.noarc 109/315 Verifying : R-CRAN-tinytex-0.48-1.fc39.copr6524679.noarch 110/315 Verifying : R-CRAN-units-0.8.4-1.fc39.copr6401676.x86_64 111/315 Verifying : R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 112/315 Verifying : R-CRAN-vctrs-0.6.4-1.fc39.copr6524681.x86_64 113/315 Verifying : R-CRAN-viridis-0.6.4-1.fc39.copr6290988.noarch 114/315 Verifying : R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noar 115/315 Verifying : R-CRAN-withr-2.5.2-1.fc39.copr6583488.noarch 116/315 Verifying : R-CRAN-wk-0.9.0-1.fc39.copr6555967.x86_64 117/315 Verifying : R-CRAN-xfun-0.41-1.fc39.copr6589789.x86_64 118/315 Verifying : R-CRAN-yaml-2.3.7-1.fc39.copr6279331.x86_64 119/315 Verifying : R-CRAN-zoo-1.8.12-1.fc39.copr6282861.x86_64 120/315 Verifying : R-littler-0.3.18-4.fc39.x86_64 121/315 Verifying : R-rpm-macros-1.2.1-7.fc39.noarch 122/315 Verifying : SuperLU-6.0.0-1.fc39.x86_64 123/315 Verifying : abattis-cantarell-vf-fonts-0.301-10.fc39.noarch 124/315 Verifying : alsa-lib-1.2.10-3.fc39.x86_64 125/315 Verifying : armadillo-10.8.2-5.fc39.x86_64 126/315 Verifying : avahi-libs-0.8-24.fc39.x86_64 127/315 Verifying : blosc-1.21.4-2.fc39.x86_64 128/315 Verifying : brotli-1.1.0-1.fc39.x86_64 129/315 Verifying : brotli-devel-1.1.0-1.fc39.x86_64 130/315 Verifying : bzip2-devel-1.0.8-16.fc39.x86_64 131/315 Verifying : cairo-1.18.0-1.fc39.x86_64 132/315 Verifying : cfitsio-4.3.0-1.fc39.x86_64 133/315 Verifying : cmake-filesystem-3.27.7-1.fc39.x86_64 134/315 Verifying : copy-jdk-configs-4.1-3.fc39.noarch 135/315 Verifying : dbus-libs-1:1.14.10-1.fc39.x86_64 136/315 Verifying : default-fonts-core-sans-4.0-9.fc39.noarch 137/315 Verifying : desktop-file-utils-0.26-9.fc39.x86_64 138/315 Verifying : emacs-filesystem-1:29.1-2.fc39.noarch 139/315 Verifying : expat-2.5.0-3.fc39.x86_64 140/315 Verifying : flexiblas-3.3.1-5.fc39.x86_64 141/315 Verifying : flexiblas-devel-3.3.1-5.fc39.x86_64 142/315 Verifying : flexiblas-netlib-3.3.1-5.fc39.x86_64 143/315 Verifying : flexiblas-netlib64-3.3.1-5.fc39.x86_64 144/315 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 145/315 Verifying : flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 146/315 Verifying : fontconfig-2.14.2-5.fc39.x86_64 147/315 Verifying : fontconfig-devel-2.14.2-5.fc39.x86_64 148/315 Verifying : fonts-filesystem-1:2.0.5-12.fc39.noarch 149/315 Verifying : freetype-2.13.1-2.fc39.x86_64 150/315 Verifying : freetype-devel-2.13.1-2.fc39.x86_64 151/315 Verifying : freexl-2.0.0-2.fc39.x86_64 152/315 Verifying : fribidi-1.0.13-2.fc39.x86_64 153/315 Verifying : gc-8.2.2-4.fc39.x86_64 154/315 Verifying : geos-3.12.0-2.fc39.x86_64 155/315 Verifying : gettext-0.22-2.fc39.x86_64 156/315 Verifying : gettext-envsubst-0.22-2.fc39.x86_64 157/315 Verifying : gettext-libs-0.22-2.fc39.x86_64 158/315 Verifying : gettext-runtime-0.22-2.fc39.x86_64 159/315 Verifying : giflib-5.2.1-17.fc39.x86_64 160/315 Verifying : gnutls-3.8.1-1.fc39.x86_64 161/315 Verifying : graphite2-1.3.14-12.fc39.x86_64 162/315 Verifying : graphite2-devel-1.3.14-12.fc39.x86_64 163/315 Verifying : guile22-2.2.7-9.fc39.x86_64 164/315 Verifying : harfbuzz-8.2.1-2.fc39.x86_64 165/315 Verifying : harfbuzz-devel-8.2.1-2.fc39.x86_64 166/315 Verifying : harfbuzz-icu-8.2.1-2.fc39.x86_64 167/315 Verifying : hdf-libs-4.2.15-13.fc39.x86_64 168/315 Verifying : hdf5-1.12.1-12.fc39.x86_64 169/315 Verifying : imath-3.1.9-3.fc39.x86_64 170/315 Verifying : java-17-openjdk-1:17.0.8.0.7-1.fc39.x86_64 171/315 Verifying : java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.x86_64 172/315 Verifying : java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.x86 173/315 Verifying : javapackages-filesystem-6.1.0-10.fc39.noarch 174/315 Verifying : jbigkit-libs-2.1-26.fc39.x86_64 175/315 Verifying : json-c-0.17-1.fc39.x86_64 176/315 Verifying : kernel-headers-6.5.4-300.fc39.x86_64 177/315 Verifying : lcms2-2.15-2.fc39.x86_64 178/315 Verifying : libICE-1.0.10-11.fc39.x86_64 179/315 Verifying : libSM-1.2.3-13.fc39.x86_64 180/315 Verifying : libX11-1.8.7-1.fc39.x86_64 181/315 Verifying : libX11-common-1.8.7-1.fc39.noarch 182/315 Verifying : libX11-devel-1.8.7-1.fc39.x86_64 183/315 Verifying : libX11-xcb-1.8.7-1.fc39.x86_64 184/315 Verifying : libXau-1.0.11-3.fc39.x86_64 185/315 Verifying : libXau-devel-1.0.11-3.fc39.x86_64 186/315 Verifying : libXcomposite-0.4.5-10.fc39.x86_64 187/315 Verifying : libXext-1.3.5-3.fc39.x86_64 188/315 Verifying : libXft-2.3.8-3.fc39.x86_64 189/315 Verifying : libXft-devel-2.3.8-3.fc39.x86_64 190/315 Verifying : libXi-1.8.1-2.fc39.x86_64 191/315 Verifying : libXmu-1.1.4-3.fc39.x86_64 192/315 Verifying : libXrender-0.9.11-3.fc39.x86_64 193/315 Verifying : libXrender-devel-0.9.11-3.fc39.x86_64 194/315 Verifying : libXt-1.2.1-5.fc39.x86_64 195/315 Verifying : libXtst-1.2.4-3.fc39.x86_64 196/315 Verifying : libaec-1.0.6-5.fc39.x86_64 197/315 Verifying : libb2-0.98.1-9.fc39.x86_64 198/315 Verifying : libblkid-devel-2.39.2-1.fc39.x86_64 199/315 Verifying : libdatrie-0.2.13-7.fc39.x86_64 200/315 Verifying : libffi-devel-3.4.4-4.fc39.x86_64 201/315 Verifying : libfontenc-1.1.6-3.fc39.x86_64 202/315 Verifying : libgeotiff-1.7.1-9.fc39.x86_64 203/315 Verifying : libgta-1.2.1-10.fc39.x86_64 204/315 Verifying : libicu-73.2-2.fc39.x86_64 205/315 Verifying : libicu-devel-73.2-2.fc39.x86_64 206/315 Verifying : libjpeg-turbo-2.1.4-3.fc39.x86_64 207/315 Verifying : libkml-1.3.0-45.fc39.x86_64 208/315 Verifying : liblerc-4.0.0-4.fc39.x86_64 209/315 Verifying : libmount-devel-2.39.2-1.fc39.x86_64 210/315 Verifying : libmpc-1.3.1-3.fc39.x86_64 211/315 Verifying : libpng-2:1.6.37-15.fc39.x86_64 212/315 Verifying : libpng-devel-2:1.6.37-15.fc39.x86_64 213/315 Verifying : libpq-15.3-1.fc39.x86_64 214/315 Verifying : libqhull_r-1:7.2.1-13.fc39.x86_64 215/315 Verifying : librttopo-1.1.0-12.fc39.x86_64 216/315 Verifying : libselinux-devel-3.5-5.fc39.x86_64 217/315 Verifying : libsepol-devel-3.5-2.fc39.x86_64 218/315 Verifying : libspatialite-5.0.1-23.fc39.x86_64 219/315 Verifying : libthai-0.1.29-6.fc39.x86_64 220/315 Verifying : libtiff-4.4.0-8.fc39.x86_64 221/315 Verifying : libtool-ltdl-2.4.7-7.fc39.x86_64 222/315 Verifying : libwebp-1.3.2-2.fc39.x86_64 223/315 Verifying : libxcb-1.13.1-12.fc39.x86_64 224/315 Verifying : libxcb-devel-1.13.1-12.fc39.x86_64 225/315 Verifying : libxcrypt-devel-4.4.36-2.fc39.x86_64 226/315 Verifying : libxml2-devel-2.10.4-3.fc39.x86_64 227/315 Verifying : lksctp-tools-1.0.19-4.fc39.x86_64 228/315 Verifying : lua-5.4.6-3.fc39.x86_64 229/315 Verifying : lua-posix-36.2.1-3.fc39.x86_64 230/315 Verifying : make-1:4.4.1-2.fc39.x86_64 231/315 Verifying : mariadb-connector-c-3.3.5-2.fc39.x86_64 232/315 Verifying : mariadb-connector-c-config-3.3.5-2.fc39.noarch 233/315 Verifying : metis-5.1.0.3-2.fc39.x86_64 234/315 Verifying : minizip-ng-3.0.7-4.fc39.x86_64 235/315 Verifying : mkfontscale-1.2.2-4.fc39.x86_64 236/315 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 237/315 Verifying : netcdf-4.9.0-5.fc38.x86_64 238/315 Verifying : nettle-3.9.1-2.fc39.x86_64 239/315 Verifying : nspr-4.35.0-14.fc39.x86_64 240/315 Verifying : nss-3.94.0-2.fc39.x86_64 241/315 Verifying : nss-softokn-3.94.0-2.fc39.x86_64 242/315 Verifying : nss-softokn-freebl-3.94.0-2.fc39.x86_64 243/315 Verifying : nss-sysinit-3.94.0-2.fc39.x86_64 244/315 Verifying : nss-util-3.94.0-2.fc39.x86_64 245/315 Verifying : ogdi-4.1.0-11.fc39.x86_64 246/315 Verifying : openblas-0.3.21-6.fc39.x86_64 247/315 Verifying : openblas-openmp-0.3.21-6.fc39.x86_64 248/315 Verifying : openblas-openmp64-0.3.21-6.fc39.x86_64 249/315 Verifying : openexr-libs-3.1.10-2.fc39.x86_64 250/315 Verifying : openjpeg2-2.5.0-5.fc39.x86_64 251/315 Verifying : pango-1.51.0-1.fc39.x86_64 252/315 Verifying : pcre2-devel-10.42-1.fc39.2.x86_64 253/315 Verifying : pcre2-utf16-10.42-1.fc39.2.x86_64 254/315 Verifying : pcre2-utf32-10.42-1.fc39.2.x86_64 255/315 Verifying : pixman-0.42.2-2.fc39.x86_64 256/315 Verifying : poppler-23.08.0-1.fc39.x86_64 257/315 Verifying : poppler-data-0.4.11-5.fc39.noarch 258/315 Verifying : proj-9.2.1-2.fc39.x86_64 259/315 Verifying : proj-data-9.2.1-2.fc39.noarch 260/315 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 261/315 Verifying : python3-3.12.0-1.fc39.x86_64 262/315 Verifying : python3-libs-3.12.0-1.fc39.x86_64 263/315 Verifying : python3-setuptools-67.7.2-7.fc39.noarch 264/315 Verifying : snappy-1.1.10-2.fc39.x86_64 265/315 Verifying : tcl-1:8.6.12-5.fc39.x86_64 266/315 Verifying : tcl-devel-1:8.6.12-5.fc39.x86_64 267/315 Verifying : tk-1:8.6.12-5.fc39.x86_64 268/315 Verifying : tk-devel-1:8.6.12-5.fc39.x86_64 269/315 Verifying : tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 270/315 Verifying : tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noar 271/315 Verifying : tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_6 272/315 Verifying : ttmkfdir-3.0.9-69.fc39.x86_64 273/315 Verifying : tzdata-2023c-2.fc39.noarch 274/315 Verifying : tzdata-java-2023c-2.fc39.noarch 275/315 Verifying : udunits2-2.2.28-8.fc39.x86_64 276/315 Verifying : unixODBC-2.3.11-4.fc39.x86_64 277/315 Verifying : uriparser-0.9.7-3.fc39.x86_64 278/315 Verifying : xdg-utils-1.1.3-15.fc39.noarch 279/315 Verifying : xerces-c-3.2.3-9.fc39.x86_64 280/315 Verifying : xml-common-0.6.3-61.fc39.noarch 281/315 Verifying : xorg-x11-fonts-Type1-7.5-36.fc39.noarch 282/315 Verifying : xorg-x11-proto-devel-2023.2-2.fc39.noarch 283/315 Verifying : xz-devel-5.4.4-1.fc39.x86_64 284/315 Verifying : zlib-devel-1.2.13-4.fc39.x86_64 285/315 Verifying : R-core-4.3.2-1.fc39.x86_64 286/315 Verifying : R-core-devel-4.3.2-1.fc39.x86_64 287/315 Verifying : R-devel-4.3.2-1.fc39.x86_64 288/315 Verifying : R-java-4.3.2-1.fc39.x86_64 289/315 Verifying : R-java-devel-4.3.2-1.fc39.x86_64 290/315 Verifying : annobin-docs-12.30-1.fc39.noarch 291/315 Verifying : annobin-plugin-gcc-12.30-1.fc39.x86_64 292/315 Verifying : arpack-3.9.1-1.fc39.x86_64 293/315 Verifying : cpp-13.2.1-4.fc39.x86_64 294/315 Verifying : crypto-policies-scripts-20231113-1.gitb402e82.fc 295/315 Verifying : cups-libs-1:2.4.7-2.fc39.x86_64 296/315 Verifying : gcc-13.2.1-4.fc39.x86_64 297/315 Verifying : gcc-c++-13.2.1-4.fc39.x86_64 298/315 Verifying : gcc-gfortran-13.2.1-4.fc39.x86_64 299/315 Verifying : gcc-plugin-annobin-13.2.1-4.fc39.x86_64 300/315 Verifying : gdal-libs-3.7.3-1.fc39.x86_64 301/315 Verifying : glib2-2.78.1-1.fc39.x86_64 302/315 Verifying : glib2-devel-2.78.1-1.fc39.x86_64 303/315 Verifying : glibc-devel-2.38-10.fc39.x86_64 304/315 Verifying : glibc-headers-x86-2.38-10.fc39.noarch 305/315 Verifying : google-noto-fonts-common-20230801-4.fc39.noarch 306/315 Verifying : google-noto-sans-vf-fonts-20230801-4.fc39.noarch 307/315 Verifying : libRmath-4.3.2-1.fc39.x86_64 308/315 Verifying : libRmath-devel-4.3.2-1.fc39.x86_64 309/315 Verifying : libgfortran-13.2.1-4.fc39.x86_64 310/315 Verifying : libquadmath-13.2.1-4.fc39.x86_64 311/315 Verifying : libquadmath-devel-13.2.1-4.fc39.x86_64 312/315 Verifying : libstdc++-devel-13.2.1-4.fc39.x86_64 313/315 Verifying : libtirpc-devel-1.3.4-0.fc39.x86_64 314/315 Verifying : sysprof-capture-devel-45.1-1.fc39.x86_64 315/315 Installed products updated. 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pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 poppler-23.08.0-1.fc39.x86_64 poppler-data-0.4.11-5.fc39.noarch proj-9.2.1-2.fc39.x86_64 proj-data-9.2.1-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.0-1.fc39.x86_64 python3-libs-3.12.0-1.fc39.x86_64 python3-setuptools-67.7.2-7.fc39.noarch snappy-1.1.10-2.fc39.x86_64 sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2023c-2.fc39.noarch tzdata-java-2023c-2.fc39.noarch udunits2-2.2.28-8.fc39.x86_64 unixODBC-2.3.11-4.fc39.x86_64 uriparser-0.9.7-3.fc39.x86_64 xdg-utils-1.1.3-15.fc39.noarch xerces-c-3.2.3-9.fc39.x86_64 xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm Start: rpmbuild R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lY1lGI + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf diversityForest + /usr/bin/mkdir -p diversityForest + cd diversityForest + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/diversityForest_0.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/diversityForest-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/diversityForest-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d diversityForest/src ']' + find diversityForest/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d diversityForest/src ']' + find diversityForest/src/Makevars diversityForest/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.vAVMmy + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd diversityForest + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.9gJkSF + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd diversityForest + mkdir -p /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64/usr/local/lib/R/library diversityForest * installing *source* package ‘diversityForest’ ... ** package ‘diversityForest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)’ using C++17 g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c AAA_check_cpp11.cpp -o AAA_check_cpp11.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Data.cpp -o Data.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c DataChar.cpp -o DataChar.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c DataFloat.cpp -o DataFloat.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c DataSparse.cpp -o DataSparse.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:397, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from DataSparse.h:31, from DataSparse.cpp:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:377: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:370: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:439: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] DataSparse.h: In member function ‘virtual double diversityForest::DataSparse::get(size_t, size_t) const’: DataSparse.h:53:12: warning: unused variable ‘col_permuted’ [-Wunused-variable] 53 | size_t col_permuted = col; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Forest.cpp -o Forest.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ForestClassification.cpp -o ForestClassification.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ForestProbability.cpp -o ForestProbability.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ForestRegression.cpp -o ForestRegression.o ForestRegression.cpp: In member function ‘diversityForest::ForestRegression::computePredictionErrorInternal()’: ForestRegression.cpp:143:35: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized] 143 | predictions[0][0][sampleID] += value; ForestRegression.cpp:135:14: note: ‘value’ was declared here 135 | double value; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ForestSurvival.cpp -o ForestSurvival.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:397, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:5: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:377: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:370: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:439: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = assign_op]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:100: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:100: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:90:53: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:46:54: required from ‘Rcpp::ReferenceInputParameter::ReferenceInputParameter(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:58:100: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Tree.cpp -o Tree.o In file included from Tree.cpp:18: utility.h: In instantiation of ‘std::vector diversityForest::reorder(std::vector&, const std::vector&) [with T = std::vector]’: Tree.cpp:1294:41: required from here utility.h:516:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 516 | for ( int s = 1, d; s < order.size(); ++ s ) { | ~~^~~~~~~~~~~~~~ utility.h: In instantiation of ‘std::vector diversityForest::reorder(std::vector&, const std::vector&) [with T = long unsigned int]’: Tree.cpp:1295:36: required from here utility.h:516:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] utility.h: In instantiation of ‘std::vector diversityForest::reorder(std::vector&, const std::vector&) [with T = std::vector >]’: Tree.cpp:1296:38: required from here utility.h:516:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] utility.h: In instantiation of ‘std::vector diversityForest::reorder(std::vector&, const std::vector&) [with T = std::vector >]’: Tree.cpp:1297:41: required from here utility.h:516:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/string:51, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/streambuf:43, from /usr/include/c++/13/bits/streambuf_iterator.h:35, from /usr/include/c++/13/iterator:66, from Tree.cpp:12: In function ‘std::min(unsigned long const&, unsigned long const&)unsigned long const&’, inlined from ‘diversityForest::Tree::drawSplitsUnivariate(unsigned long, unsigned long, std::vector, std::allocator > >&)’ at Tree.cpp:832:29: /usr/include/c++/13/bits/stl_algobase.h:238:7: warning: ‘n_triedsplitscandidate’ may be used uninitialized [-Wmaybe-uninitialized] 238 | if (__b < __a) | ^~ Tree.cpp: In member function ‘diversityForest::Tree::drawSplitsUnivariate(unsigned long, unsigned long, std::vector, std::allocator > >&)’: Tree.cpp:807:12: note: ‘n_triedsplitscandidate’ was declared here 807 | size_t n_triedsplitscandidate; | ^~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c TreeClassification.cpp -o TreeClassification.o TreeClassification.cpp: In member function ‘diversityForest::TreeClassification::computePredictionAccuracyInternal()’: TreeClassification.cpp:234:5: warning: ‘predicted_value’ may be used uninitialized [-Wmaybe-uninitialized] 234 | if (predicted_value != real_value) { | ^~ TreeClassification.cpp:226:12: note: ‘predicted_value’ was declared here 226 | double predicted_value; | ^~~~~~~~~~~~~~~ TreeClassification.cpp: In member function ‘diversityForest::TreeClassification::findBestSplitMultivariate(unsigned long, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >)’: TreeClassification.cpp:475:23: warning: ‘best_split_type’ may be used uninitialized [-Wmaybe-uninitialized] 475 | split_types[nodeID] = best_split_type; TreeClassification.cpp:396:10: note: ‘best_split_type’ was declared here 396 | size_t best_split_type; | ^~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c TreeProbability.cpp -o TreeProbability.o TreeProbability.cpp: In member function ‘diversityForest::TreeProbability::findBestSplitMultivariate(unsigned long, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >)’: TreeProbability.cpp:347:23: warning: ‘best_split_type’ may be used uninitialized [-Wmaybe-uninitialized] 347 | split_types[nodeID] = best_split_type; TreeProbability.cpp:266:10: note: ‘best_split_type’ was declared here 266 | size_t best_split_type; | ^~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c TreeRegression.cpp -o TreeRegression.o TreeRegression.cpp: In member function ‘diversityForest::TreeRegression::computePredictionAccuracyInternal()’: TreeRegression.cpp:219:5: warning: ‘predicted_value’ may be used uninitialized [-Wmaybe-uninitialized] 219 | if (predicted_value != real_value) { | ^~ TreeRegression.cpp:211:12: note: ‘predicted_value’ was declared here 211 | double predicted_value; | ^~~~~~~~~~~~~~~ TreeRegression.cpp: In member function ‘diversityForest::TreeRegression::findBestSplitMultivariate(unsigned long, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >)’: TreeRegression.cpp:451:23: warning: ‘best_split_type’ may be used uninitialized [-Wmaybe-uninitialized] 451 | split_types[nodeID] = best_split_type; TreeRegression.cpp:372:10: note: ‘best_split_type’ was declared here 372 | size_t best_split_type; | ^~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c TreeSurvival.cpp -o TreeSurvival.o TreeSurvival.cpp: In member function ‘diversityForest::TreeSurvival::findBestSplitMultivariate(unsigned long, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >)’: TreeSurvival.cpp:414:23: warning: ‘best_split_type’ may be used uninitialized [-Wmaybe-uninitialized] 414 | split_types[nodeID] = best_split_type; TreeSurvival.cpp:296:10: note: ‘best_split_type’ was declared here 296 | size_t best_split_type; | ^~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c divforCpp.cpp -o divforCpp.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:397, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from divforCpp.cpp:28: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:377: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:370: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:439: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from divforCpp.cpp:44: DataSparse.h: In member function ‘virtual double diversityForest::DataSparse::get(size_t, size_t) const’: DataSparse.h:53:12: warning: unused variable ‘col_permuted’ [-Wunused-variable] 53 | size_t col_permuted = col; | ^~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Array >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Array > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, Eigen::Array > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Array >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1139:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]’ DataSparse.h:66:18: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utility.cpp -o utility.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -DR_BUILD -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utilityRcpp.cpp -o utilityRcpp.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o diversityForest.so AAA_check_cpp11.o Data.o DataChar.o DataFloat.o DataSparse.o Forest.o ForestClassification.o ForestProbability.o ForestRegression.o ForestSurvival.o RcppExports.o Tree.o TreeClassification.o TreeProbability.o TreeRegression.o TreeSurvival.o divforCpp.o utility.o utilityRcpp.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64/usr/local/lib/R/library/00LOCK-diversityForest/00new/diversityForest/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘diversityForest’ finding HTML links ... done diversityForest-package html divfor html importance.divfor html interactionfor html plot.interactionfor html plotEffects html plotPair html predict.divfor html predict.interactionfor html stock html tunedivfor html zoo html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diversityForest) + test -d diversityForest/src + cd diversityForest/src + rm -f AAA_check_cpp11.o Data.o DataChar.o DataFloat.o DataSparse.o Forest.o ForestClassification.o ForestProbability.o ForestRegression.o ForestSurvival.o RcppExports.o Tree.o TreeClassification.o TreeProbability.o TreeRegression.o TreeSurvival.o divforCpp.o utility.o utilityRcpp.o diversityForest.so + rm -f /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.4.0-1.fc39.copr6665562 --unique-debug-suffix -0.4.0-1.fc39.copr6665562.x86_64 --unique-debug-src-base R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/diversityForest find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 895 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 Provides: R-CRAN-diversityForest = 0.4.0-1.fc39.copr6665562 R-CRAN-diversityForest(x86-64) = 0.4.0-1.fc39.copr6665562 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-diversityForest-debugsource-0.4.0-1.fc39.copr6665562.x86_64 Provides: R-CRAN-diversityForest-debugsource = 0.4.0-1.fc39.copr6665562 R-CRAN-diversityForest-debugsource(x86-64) = 0.4.0-1.fc39.copr6665562 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-diversityForest-debuginfo-0.4.0-1.fc39.copr6665562.x86_64 Provides: R-CRAN-diversityForest-debuginfo = 0.4.0-1.fc39.copr6665562 R-CRAN-diversityForest-debuginfo(x86-64) = 0.4.0-1.fc39.copr6665562 debuginfo(build-id) = aa5ce1b692481a4c33894218d5525a273330217f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-diversityForest-debugsource(x86-64) = 0.4.0-1.fc39.copr6665562 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-diversityForest-debugsource-0.4.0-1.fc39.copr6665562.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-diversityForest-debuginfo-0.4.0-1.fc39.copr6665562.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.74GPuj + umask 022 + cd /builddir/build/BUILD + cd diversityForest + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.PY66pj + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/diversityForest-SPECPARTS + rm -rf diversityForest diversityForest.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm Finish: build phase for R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1700317982.767386/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1700317982.767386/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1700317982.767386/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-diversityForest-0.4.0-1.fc39.copr6665562.src.rpm) Config(child) 2 minutes 6 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-diversityForest", "epoch": null, "version": "0.4.0", "release": "1.fc39.copr6665562", "arch": "x86_64" }, { "name": "R-CRAN-diversityForest", "epoch": null, "version": "0.4.0", "release": "1.fc39.copr6665562", "arch": "src" }, { "name": "R-CRAN-diversityForest-debuginfo", "epoch": null, "version": "0.4.0", "release": "1.fc39.copr6665562", "arch": "x86_64" }, { "name": "R-CRAN-diversityForest-debugsource", "epoch": null, "version": "0.4.0", "release": "1.fc39.copr6665562", "arch": "x86_64" } ] } RPMResults finished