Warning: Permanently added '3.94.179.168' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6665643-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.69 PID: 9569 Logging PID: 9570 Task: {'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 6665643, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '319bc8af266c5923659187e1102f0fe324880661', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bigsnpr', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-bigsnpr', 'package_version': '1.12.2-1', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'submitter': 'iucar', 'tags': [], 'task_id': '6665643-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bigsnpr /var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-bigsnpr', '/var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr'... Running: git checkout 319bc8af266c5923659187e1102f0fe324880661 -- cmd: ['git', 'checkout', '319bc8af266c5923659187e1102f0fe324880661', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr rc: 0 stdout: stderr: Note: switching to '319bc8af266c5923659187e1102f0fe324880661'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 319bc8a automatic import of R-CRAN-bigsnpr Running: copr-distgit-client sources 100 1035k 100 1035k 0 0 20.3M 0 --:--:-- --:--:-- --:--:-- 20.6M INFO: Reading stdout from command: md5sum bigsnpr_1.12.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700319849.219098 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700319849.219098 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1700319849.219098/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 154 MB/s | 26 MB 00:00 fedora 20 MB/s | 89 MB 00:04 updates 47 MB/s | 14 MB 00:00 Last metadata expiration check: 0:00:03 ago on Sat Nov 18 15:04:31 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.21-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-4.fc39 fedora 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-30 fedora 18 k findutils x86_64 1:4.9.0-5.fc39 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-10.fc39 updates 70 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 262-1.fc39 fedora 84 k rpm-build x86_64 4.19.0-1.fc39 fedora 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc39 fedora 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-4.fc39 fedora 117 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-13.fc39 fedora 5.6 M binutils-gold x86_64 2.40-13.fc39 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k coreutils-common x86_64 9.3-4.fc39 fedora 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231113-1.gitb402e82.fc39 updates 99 k curl x86_64 8.2.1-3.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-10.fc39 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.190-1.fc39 updates 550 k elfutils-debuginfod-client x86_64 0.190-1.fc39 updates 38 k elfutils-default-yama-scope noarch 0.190-1.fc39 updates 14 k elfutils-libelf x86_64 0.190-1.fc39 updates 195 k elfutils-libs x86_64 0.190-1.fc39 updates 260 k fedora-gpg-keys noarch 39-1 fedora 130 k fedora-release noarch 39-30 fedora 8.1 k fedora-release-identity-basic noarch 39-30 fedora 8.9 k fedora-repos noarch 39-1 fedora 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-10.fc39 updates 4.2 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-10.fc39 updates 2.1 M glibc-common x86_64 2.38-10.fc39 updates 349 k glibc-gconv-extra x86_64 2.38-10.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.3.1-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-2.fc39 updates 764 k libacl x86_64 2.3.1-8.fc39 fedora 23 k libarchive x86_64 3.7.1-1.fc39 fedora 408 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.2-1.fc39 fedora 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-7.fc39 fedora 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-3.fc39 fedora 323 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-1.fc39 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc39 fedora 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-4.fc39 updates 111 k libgomp x86_64 13.2.1-4.fc39 updates 320 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc39 fedora 155 k libnghttp2 x86_64 1.55.1-4.fc39 updates 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc39 fedora 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-4.fc39 updates 862 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-0.fc39 updates 94 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc39 fedora 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.5-4.fc39 fedora 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-7.20230520.fc39 fedora 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc39 fedora 2.2 M p11-kit x86_64 0.25.2-1.fc39 updates 520 k p11-kit-trust x86_64 0.25.2-1.fc39 updates 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc39 fedora 57 k pyproject-srpm-macros noarch 1.10.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-4.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.11-1.fc39 updates 8.3 k qt6-srpm-macros noarch 6.6.0-1.fc39 updates 8.6 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.19.0-1.fc39 fedora 538 k rpm-build-libs x86_64 4.19.0-1.fc39 fedora 96 k rpm-libs x86_64 4.19.0-1.fc39 fedora 312 k rpm-sequoia x86_64 1.5.0-1.fc39 fedora 871 k rpmautospec-rpm-macros noarch 0.3.5-4.fc39 fedora 8.8 k rust-srpm-macros noarch 25.2-2.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.5-2.fc39 fedora 689 k util-linux-core x86_64 2.39.2-1.fc39 fedora 494 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.5-4.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 151 Packages Total download size: 52 M Installed size: 178 M Downloading Packages: (1/151): alternatives-1.25-1.fc39.x86_64.rpm 1.8 MB/s | 39 kB 00:00 (2/151): ansible-srpm-macros-1-11.fc39.noarch.r 867 kB/s | 21 kB 00:00 (3/151): authselect-1.4.3-1.fc39.x86_64.rpm 46 MB/s | 149 kB 00:00 (4/151): audit-libs-3.1.2-4.fc39.x86_64.rpm 4.5 MB/s | 117 kB 00:00 (5/151): authselect-libs-1.4.3-1.fc39.x86_64.rp 71 MB/s | 249 kB 00:00 (6/151): basesystem-11-18.fc39.noarch.rpm 2.6 MB/s | 7.2 kB 00:00 (7/151): binutils-gold-2.40-13.fc39.x86_64.rpm 55 MB/s | 797 kB 00:00 (8/151): bzip2-1.0.8-16.fc39.x86_64.rpm 3.1 MB/s | 52 kB 00:00 (9/151): binutils-2.40-13.fc39.x86_64.rpm 227 MB/s | 5.6 MB 00:00 (10/151): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 4.6 MB/s | 41 kB 00:00 (11/151): ca-certificates-2023.2.60_v7.0.306-2. 100 MB/s | 837 kB 00:00 (12/151): coreutils-9.3-4.fc39.x86_64.rpm 212 MB/s | 1.1 MB 00:00 (13/151): coreutils-common-9.3-4.fc39.x86_64.rp 194 MB/s | 2.1 MB 00:00 (14/151): cpio-2.14-4.fc39.x86_64.rpm 23 MB/s | 279 kB 00:00 (15/151): cracklib-2.9.11-2.fc39.x86_64.rpm 12 MB/s | 94 kB 00:00 (16/151): curl-8.2.1-3.fc39.x86_64.rpm 195 MB/s | 345 kB 00:00 (17/151): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 208 MB/s | 793 kB 00:00 (18/151): debugedit-5.0-10.fc39.x86_64.rpm 18 MB/s | 77 kB 00:00 (19/151): diffutils-3.10-3.fc39.x86_64.rpm 65 MB/s | 398 kB 00:00 (20/151): ed-1.19-4.fc39.x86_64.rpm 22 MB/s | 79 kB 00:00 (21/151): dwz-0.15-3.fc39.x86_64.rpm 31 MB/s | 134 kB 00:00 (22/151): efi-srpm-macros-5-9.fc39.noarch.rpm 22 MB/s | 22 kB 00:00 (23/151): fedora-gpg-keys-39-1.noarch.rpm 78 MB/s | 130 kB 00:00 (24/151): fedora-release-39-30.noarch.rpm 5.0 MB/s | 8.1 kB 00:00 (25/151): fedora-release-common-39-30.noarch.rp 11 MB/s | 18 kB 00:00 (26/151): fedora-repos-39-1.noarch.rpm 9.1 MB/s | 9.3 kB 00:00 (27/151): fedora-release-identity-basic-39-30.n 7.0 MB/s | 8.9 kB 00:00 (28/151): file-5.44-5.fc39.x86_64.rpm 37 MB/s | 49 kB 00:00 (29/151): filesystem-3.18-6.fc39.x86_64.rpm 289 MB/s | 1.1 MB 00:00 (30/151): file-libs-5.44-5.fc39.x86_64.rpm 126 MB/s | 729 kB 00:00 (31/151): findutils-4.9.0-5.fc39.x86_64.rpm 78 MB/s | 492 kB 00:00 (32/151): fonts-srpm-macros-2.0.5-12.fc39.noarc 11 MB/s | 26 kB 00:00 (33/151): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 2.8 MB/s | 7.4 kB 00:00 (34/151): gawk-5.2.2-2.fc39.x86_64.rpm 244 MB/s | 1.1 MB 00:00 (35/151): gdbm-libs-1.23-4.fc39.x86_64.rpm 12 MB/s | 56 kB 00:00 (36/151): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 1.8 MB/s | 7.8 kB 00:00 (37/151): gnat-srpm-macros-6-3.fc39.noarch.rpm 7.3 MB/s | 8.8 kB 00:00 (38/151): gmp-6.2.1-5.fc39.x86_64.rpm 121 MB/s | 313 kB 00:00 (39/151): grep-3.11-3.fc39.x86_64.rpm 98 MB/s | 298 kB 00:00 (40/151): info-7.0.3-3.fc39.x86_64.rpm 88 MB/s | 182 kB 00:00 (41/151): jansson-2.13.1-7.fc39.x86_64.rpm 29 MB/s | 44 kB 00:00 (42/151): kernel-srpm-macros-1.0-20.fc39.noarch 6.9 MB/s | 10 kB 00:00 (43/151): keyutils-libs-1.6.1-7.fc39.x86_64.rpm 26 MB/s | 31 kB 00:00 (44/151): libacl-2.3.1-8.fc39.x86_64.rpm 13 MB/s | 23 kB 00:00 (45/151): gzip-1.12-6.fc39.x86_64.rpm 22 MB/s | 166 kB 00:00 (46/151): libarchive-3.7.1-1.fc39.x86_64.rpm 111 MB/s | 408 kB 00:00 (47/151): libattr-2.5.1-8.fc39.x86_64.rpm 8.0 MB/s | 18 kB 00:00 (48/151): libblkid-2.39.2-1.fc39.x86_64.rpm 73 MB/s | 116 kB 00:00 (49/151): libbrotli-1.1.0-1.fc39.x86_64.rpm 167 MB/s | 336 kB 00:00 (50/151): libcap-2.48-7.fc39.x86_64.rpm 28 MB/s | 68 kB 00:00 (51/151): libcap-ng-0.8.3-8.fc39.x86_64.rpm 13 MB/s | 32 kB 00:00 (52/151): libcom_err-1.47.0-2.fc39.x86_64.rpm 16 MB/s | 26 kB 00:00 (53/151): libcurl-8.2.1-3.fc39.x86_64.rpm 139 MB/s | 323 kB 00:00 (54/151): libdb-5.3.28-56.fc39.x86_64.rpm 181 MB/s | 760 kB 00:00 (55/151): libeconf-0.5.2-1.fc39.x86_64.rpm 8.7 MB/s | 30 kB 00:00 (56/151): libevent-2.1.12-9.fc39.x86_64.rpm 79 MB/s | 258 kB 00:00 (57/151): libffi-3.4.4-4.fc39.x86_64.rpm 30 MB/s | 40 kB 00:00 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-4.fc39.x86_64 1/151 Running scriptlet: libgcc-13.2.1-4.fc39.x86_64 1/151 Installing : crypto-policies-20231113-1.gitb402e82.fc39.noarc 2/151 Running scriptlet: crypto-policies-20231113-1.gitb402e82.fc39.noarc 2/151 Installing : fedora-release-identity-basic-39-30.noarch 3/151 Installing : fedora-gpg-keys-39-1.noarch 4/151 Installing : fedora-repos-39-1.noarch 5/151 Installing : fedora-release-common-39-30.noarch 6/151 Installing : fedora-release-39-30.noarch 7/151 Installing : setup-2.14.4-1.fc39.noarch 8/151 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 8/151 Installing : filesystem-3.18-6.fc39.x86_64 9/151 Installing : basesystem-11-18.fc39.noarch 10/151 Installing : rust-srpm-macros-25.2-2.fc39.noarch 11/151 Installing : qt6-srpm-macros-6.6.0-1.fc39.noarch 12/151 Installing : qt5-srpm-macros-5.15.11-1.fc39.noarch 13/151 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cracklib-2.9.11-2.fc39.x86_64 117/151 Installing : libpwquality-1.4.5-6.fc39.x86_64 118/151 Installing : authselect-1.4.3-1.fc39.x86_64 119/151 Installing : libnsl2-2.0.0-6.fc39.x86_64 120/151 Installing : pam-1.5.3-3.fc39.x86_64 121/151 Installing : libssh-0.10.5-2.fc39.x86_64 122/151 Installing : libarchive-3.7.1-1.fc39.x86_64 123/151 Installing : libevent-2.1.12-9.fc39.x86_64 124/151 Installing : openldap-2.6.6-1.fc39.x86_64 125/151 Installing : libcurl-8.2.1-3.fc39.x86_64 126/151 Installing : elfutils-libs-0.190-1.fc39.x86_64 127/151 Installing : elfutils-debuginfod-client-0.190-1.fc39.x86_64 128/151 Installing : binutils-gold-2.40-13.fc39.x86_64 129/151 Running scriptlet: binutils-gold-2.40-13.fc39.x86_64 129/151 Installing : binutils-2.40-13.fc39.x86_64 130/151 Running scriptlet: binutils-2.40-13.fc39.x86_64 130/151 Installing : elfutils-0.190-1.fc39.x86_64 131/151 Installing : gdb-minimal-13.2-10.fc39.x86_64 132/151 Installing : debugedit-5.0-10.fc39.x86_64 133/151 Installing : curl-8.2.1-3.fc39.x86_64 134/151 Installing : rpm-sequoia-1.5.0-1.fc39.x86_64 135/151 Installing : rpm-libs-4.19.0-1.fc39.x86_64 136/151 Running scriptlet: rpm-4.19.0-1.fc39.x86_64 137/151 Installing : rpm-4.19.0-1.fc39.x86_64 137/151 Installing : efi-srpm-macros-5-9.fc39.noarch 138/151 Installing : lua-srpm-macros-1-9.fc39.noarch 139/151 Installing : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 140/151 Installing : rpm-build-libs-4.19.0-1.fc39.x86_64 141/151 Installing : ansible-srpm-macros-1-11.fc39.noarch 142/151 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/151 Installing : python-srpm-macros-3.12-4.fc39.noarch 144/151 Installing : go-srpm-macros-3.3.1-1.fc39.noarch 145/151 Installing : redhat-rpm-config-262-1.fc39.noarch 146/151 Installing : rpm-build-4.19.0-1.fc39.x86_64 147/151 Installing : pyproject-srpm-macros-1.10.0-1.fc39.noarch 148/151 Installing : util-linux-2.39.2-1.fc39.x86_64 149/151 Installing : which-2.21-40.fc39.x86_64 150/151 Installing : info-7.0.3-3.fc39.x86_64 151/151 Running scriptlet: filesystem-3.18-6.fc39.x86_64 151/151 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 151/151 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 151/151 Running scriptlet: rpm-4.19.0-1.fc39.x86_64 151/151 Running scriptlet: info-7.0.3-3.fc39.x86_64 151/151 Verifying : alternatives-1.25-1.fc39.x86_64 1/151 Verifying : ansible-srpm-macros-1-11.fc39.noarch 2/151 Verifying : audit-libs-3.1.2-4.fc39.x86_64 3/151 Verifying : authselect-1.4.3-1.fc39.x86_64 4/151 Verifying : authselect-libs-1.4.3-1.fc39.x86_64 5/151 Verifying : basesystem-11-18.fc39.noarch 6/151 Verifying : binutils-2.40-13.fc39.x86_64 7/151 Verifying : binutils-gold-2.40-13.fc39.x86_64 8/151 Verifying : bzip2-1.0.8-16.fc39.x86_64 9/151 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 10/151 Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 11/151 Verifying : coreutils-9.3-4.fc39.x86_64 12/151 Verifying : coreutils-common-9.3-4.fc39.x86_64 13/151 Verifying : cpio-2.14-4.fc39.x86_64 14/151 Verifying : cracklib-2.9.11-2.fc39.x86_64 15/151 Verifying : curl-8.2.1-3.fc39.x86_64 16/151 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 17/151 Verifying : debugedit-5.0-10.fc39.x86_64 18/151 Verifying : diffutils-3.10-3.fc39.x86_64 19/151 Verifying : dwz-0.15-3.fc39.x86_64 20/151 Verifying : ed-1.19-4.fc39.x86_64 21/151 Verifying : efi-srpm-macros-5-9.fc39.noarch 22/151 Verifying : fedora-gpg-keys-39-1.noarch 23/151 Verifying : fedora-release-39-30.noarch 24/151 Verifying : fedora-release-common-39-30.noarch 25/151 Verifying : fedora-release-identity-basic-39-30.noarch 26/151 Verifying : fedora-repos-39-1.noarch 27/151 Verifying : file-5.44-5.fc39.x86_64 28/151 Verifying : file-libs-5.44-5.fc39.x86_64 29/151 Verifying : filesystem-3.18-6.fc39.x86_64 30/151 Verifying : findutils-1:4.9.0-5.fc39.x86_64 31/151 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 32/151 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 33/151 Verifying : gawk-5.2.2-2.fc39.x86_64 34/151 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 35/151 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 36/151 Verifying : gmp-1:6.2.1-5.fc39.x86_64 37/151 Verifying : gnat-srpm-macros-6-3.fc39.noarch 38/151 Verifying : grep-3.11-3.fc39.x86_64 39/151 Verifying : gzip-1.12-6.fc39.x86_64 40/151 Verifying : info-7.0.3-3.fc39.x86_64 41/151 Verifying : jansson-2.13.1-7.fc39.x86_64 42/151 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 43/151 Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 44/151 Verifying : libacl-2.3.1-8.fc39.x86_64 45/151 Verifying : libarchive-3.7.1-1.fc39.x86_64 46/151 Verifying : libattr-2.5.1-8.fc39.x86_64 47/151 Verifying : libblkid-2.39.2-1.fc39.x86_64 48/151 Verifying : libbrotli-1.1.0-1.fc39.x86_64 49/151 Verifying : libcap-2.48-7.fc39.x86_64 50/151 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 51/151 Verifying : libcom_err-1.47.0-2.fc39.x86_64 52/151 Verifying : libcurl-8.2.1-3.fc39.x86_64 53/151 Verifying : libdb-5.3.28-56.fc39.x86_64 54/151 Verifying : libeconf-0.5.2-1.fc39.x86_64 55/151 Verifying : libevent-2.1.12-9.fc39.x86_64 56/151 Verifying : libfdisk-2.39.2-1.fc39.x86_64 57/151 Verifying : libffi-3.4.4-4.fc39.x86_64 58/151 Verifying : libidn2-2.3.4-3.fc39.x86_64 59/151 Verifying : libmount-2.39.2-1.fc39.x86_64 60/151 Verifying : libnsl2-2.0.0-6.fc39.x86_64 61/151 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 62/151 Verifying : libpsl-0.21.2-4.fc39.x86_64 63/151 Verifying : libpwquality-1.4.5-6.fc39.x86_64 64/151 Verifying : libselinux-3.5-5.fc39.x86_64 65/151 Verifying : libsemanage-3.5-4.fc39.x86_64 66/151 Verifying : libsepol-3.5-2.fc39.x86_64 67/151 Verifying : libsigsegv-2.14-5.fc39.x86_64 68/151 Verifying : libsmartcols-2.39.2-1.fc39.x86_64 69/151 Verifying : libssh-0.10.5-2.fc39.x86_64 70/151 Verifying : libssh-config-0.10.5-2.fc39.noarch 71/151 Verifying : libtasn1-4.19.0-3.fc39.x86_64 72/151 Verifying : libunistring-1.1-5.fc39.x86_64 73/151 Verifying : libutempter-1.2.1-10.fc39.x86_64 74/151 Verifying : libuuid-2.39.2-1.fc39.x86_64 75/151 Verifying : libverto-0.3.2-6.fc39.x86_64 76/151 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 77/151 Verifying : libxml2-2.10.4-3.fc39.x86_64 78/151 Verifying : libzstd-1.5.5-4.fc39.x86_64 79/151 Verifying : lua-libs-5.4.6-3.fc39.x86_64 80/151 Verifying : lua-srpm-macros-1-9.fc39.noarch 81/151 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 82/151 Verifying : mpfr-4.2.0-3.fc39.x86_64 83/151 Verifying : ncurses-base-6.4-7.20230520.fc39.noarch 84/151 Verifying : ncurses-libs-6.4-7.20230520.fc39.x86_64 85/151 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 86/151 Verifying : openblas-srpm-macros-2-14.fc39.noarch 87/151 Verifying : openldap-2.6.6-1.fc39.x86_64 88/151 Verifying : openssl-libs-1:3.1.1-4.fc39.x86_64 89/151 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 90/151 Verifying : patch-2.7.6-22.fc39.x86_64 91/151 Verifying : pcre2-10.42-1.fc39.2.x86_64 92/151 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 93/151 Verifying : perl-srpm-macros-1-51.fc39.noarch 94/151 Verifying : pkgconf-1.9.5-2.fc39.x86_64 95/151 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 96/151 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 97/151 Verifying : popt-1.19-3.fc39.x86_64 98/151 Verifying : publicsuffix-list-dafsa-20230812-1.fc39.noarch 99/151 Verifying : python-srpm-macros-3.12-4.fc39.noarch 100/151 Verifying : readline-8.2-4.fc39.x86_64 101/151 Verifying : redhat-rpm-config-262-1.fc39.noarch 102/151 Verifying : rpm-4.19.0-1.fc39.x86_64 103/151 Verifying : rpm-build-4.19.0-1.fc39.x86_64 104/151 Verifying : rpm-build-libs-4.19.0-1.fc39.x86_64 105/151 Verifying : rpm-libs-4.19.0-1.fc39.x86_64 106/151 Verifying : rpm-sequoia-1.5.0-1.fc39.x86_64 107/151 Verifying : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 108/151 Verifying : sed-4.8-14.fc39.x86_64 109/151 Verifying : setup-2.14.4-1.fc39.noarch 110/151 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 111/151 Verifying : systemd-libs-254.5-2.fc39.x86_64 112/151 Verifying : tar-2:1.35-2.fc39.x86_64 113/151 Verifying : unzip-6.0-62.fc39.x86_64 114/151 Verifying : util-linux-2.39.2-1.fc39.x86_64 115/151 Verifying : util-linux-core-2.39.2-1.fc39.x86_64 116/151 Verifying : which-2.21-40.fc39.x86_64 117/151 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 118/151 Verifying : xz-5.4.4-1.fc39.x86_64 119/151 Verifying : xz-libs-5.4.4-1.fc39.x86_64 120/151 Verifying : zip-3.0-39.fc39.x86_64 121/151 Verifying : zlib-1.2.13-4.fc39.x86_64 122/151 Verifying : zstd-1.5.5-4.fc39.x86_64 123/151 Verifying : bash-5.2.21-1.fc39.x86_64 124/151 Verifying : crypto-policies-20231113-1.gitb402e82.fc39.noarc 125/151 Verifying : elfutils-0.190-1.fc39.x86_64 126/151 Verifying : elfutils-debuginfod-client-0.190-1.fc39.x86_64 127/151 Verifying : elfutils-default-yama-scope-0.190-1.fc39.noarch 128/151 Verifying : elfutils-libelf-0.190-1.fc39.x86_64 129/151 Verifying : elfutils-libs-0.190-1.fc39.x86_64 130/151 Verifying : gdb-minimal-13.2-10.fc39.x86_64 131/151 Verifying : glibc-2.38-10.fc39.x86_64 132/151 Verifying : glibc-common-2.38-10.fc39.x86_64 133/151 Verifying : glibc-gconv-extra-2.38-10.fc39.x86_64 134/151 Verifying : glibc-minimal-langpack-2.38-10.fc39.x86_64 135/151 Verifying : go-srpm-macros-3.3.1-1.fc39.noarch 136/151 Verifying : krb5-libs-1.21.2-2.fc39.x86_64 137/151 Verifying : libgcc-13.2.1-4.fc39.x86_64 138/151 Verifying : libgomp-13.2.1-4.fc39.x86_64 139/151 Verifying : libnghttp2-1.55.1-4.fc39.x86_64 140/151 Verifying : libstdc++-13.2.1-4.fc39.x86_64 141/151 Verifying : libtirpc-1.3.4-0.fc39.x86_64 142/151 Verifying : p11-kit-0.25.2-1.fc39.x86_64 143/151 Verifying : p11-kit-trust-0.25.2-1.fc39.x86_64 144/151 Verifying : pam-1.5.3-3.fc39.x86_64 145/151 Verifying : pam-libs-1.5.3-3.fc39.x86_64 146/151 Verifying : pyproject-srpm-macros-1.10.0-1.fc39.noarch 147/151 Verifying : qt5-srpm-macros-5.15.11-1.fc39.noarch 148/151 Verifying : qt6-srpm-macros-6.6.0-1.fc39.noarch 149/151 Verifying : rust-srpm-macros-25.2-2.fc39.noarch 150/151 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 151/151 Installed products updated. Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-1.fc39.x86_64 binutils-2.40-13.fc39.x86_64 binutils-gold-2.40-13.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-4.fc39.x86_64 coreutils-common-9.3-4.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc39.noarch curl-8.2.1-3.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-1.fc39.x86_64 elfutils-debuginfod-client-0.190-1.fc39.x86_64 elfutils-default-yama-scope-0.190-1.fc39.noarch elfutils-libelf-0.190-1.fc39.x86_64 elfutils-libs-0.190-1.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-30.noarch fedora-release-common-39-30.noarch fedora-release-identity-basic-39-30.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-10.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-10.fc39.x86_64 glibc-common-2.38-10.fc39.x86_64 glibc-gconv-extra-2.38-10.fc39.x86_64 glibc-minimal-langpack-2.38-10.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc39.x86_64 libacl-2.3.1-8.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.2-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-3.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-1.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-4.fc39.x86_64 libgomp-13.2.1-4.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc39.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-4.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.noarch ncurses-libs-6.4-7.20230520.fc39.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc39.x86_64 p11-kit-0.25.2-1.fc39.x86_64 p11-kit-trust-0.25.2-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc39.noarch pyproject-srpm-macros-1.10.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.11-1.fc39.noarch qt6-srpm-macros-6.6.0-1.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-262-1.fc39.noarch rpm-4.19.0-1.fc39.x86_64 rpm-build-4.19.0-1.fc39.x86_64 rpm-build-libs-4.19.0-1.fc39.x86_64 rpm-libs-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-4.fc39.noarch rust-srpm-macros-25.2-2.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.5-2.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc39.x86_64 util-linux-core-2.39.2-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-1.fc39.x86_64 binutils-2.40-13.fc39.x86_64 binutils-gold-2.40-13.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-4.fc39.x86_64 coreutils-common-9.3-4.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231113-1.gitb402e82.fc39.noarch curl-8.2.1-3.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-1.fc39.x86_64 elfutils-debuginfod-client-0.190-1.fc39.x86_64 elfutils-default-yama-scope-0.190-1.fc39.noarch elfutils-libelf-0.190-1.fc39.x86_64 elfutils-libs-0.190-1.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-30.noarch fedora-release-common-39-30.noarch fedora-release-identity-basic-39-30.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-5.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-10.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-10.fc39.x86_64 glibc-common-2.38-10.fc39.x86_64 glibc-gconv-extra-2.38-10.fc39.x86_64 glibc-minimal-langpack-2.38-10.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-2.fc39.x86_64 libacl-2.3.1-8.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.2-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-3.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-1.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-4.fc39.x86_64 libgomp-13.2.1-4.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc39.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-4.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-0.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.noarch ncurses-libs-6.4-7.20230520.fc39.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc39.x86_64 p11-kit-0.25.2-1.fc39.x86_64 p11-kit-trust-0.25.2-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc39.noarch pyproject-srpm-macros-1.10.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.11-1.fc39.noarch qt6-srpm-macros-6.6.0-1.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-262-1.fc39.noarch rpm-4.19.0-1.fc39.x86_64 rpm-build-4.19.0-1.fc39.x86_64 rpm-build-libs-4.19.0-1.fc39.x86_64 rpm-libs-4.19.0-1.fc39.x86_64 rpm-sequoia-1.5.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-4.fc39.noarch rust-srpm-macros-25.2-2.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.5-2.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc39.x86_64 util-linux-core-2.39.2-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1700319849.219098/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1700319849.219098/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1700319849.219098/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-j38iizc6/R-CRAN-bigsnpr/R-CRAN-bigsnpr.spec) Config(child) 0 minutes 35 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1700319849.219098/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.18.1-3.fc38.x86_64 rpm-sequoia-1.4.0-3.fc38.x86_64 python3-dnf-4.18.1-1.fc38.noarch python3-dnf-plugins-core-4.4.3-1.fc38.noarch yum-4.18.1-1.fc38.noarch Start: build phase for R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm Start: build setup for R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 67 kB/s | 1.5 kB 00:00 Copr repository 177 MB/s | 26 MB 00:00 fedora 487 kB/s | 23 kB 00:00 updates 161 kB/s | 13 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-Matrix x86_64 1.6.3-1.fc39.copr6636945 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.11-1.fc39.copr6279302 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 0.12.6.6.0-1.fc39.copr6589779 copr_base 935 k R-CRAN-bigassertr noarch 0.1.6-1.fc39.copr6281167 copr_base 45 k R-CRAN-bigparallelr noarch 0.3.2-1.fc39.copr6287477 copr_base 57 k R-CRAN-bigreadr x86_64 0.2.5-1.fc39.copr6283207 copr_base 186 k R-CRAN-bigsparser x86_64 0.6.1-1.fc39.copr6665130 copr_base 253 k R-CRAN-bigstatsr x86_64 1.5.12-1.fc39.copr6293679 copr_base 1.3 M R-CRAN-bigutilsr x86_64 0.3.4-1.fc39.copr6289130 copr_base 972 k R-CRAN-data.table x86_64 1.14.8-1.fc39.copr6279367 copr_base 1.9 M R-CRAN-doRNG noarch 1.8.6-1.fc39.copr6285378 copr_base 309 k R-CRAN-foreach noarch 1.5.2-1.fc39.copr6282916 copr_base 143 k R-CRAN-ggplot2 noarch 3.4.4-1.fc39.copr6524688 copr_base 4.2 M R-CRAN-magrittr x86_64 2.0.3-1.fc39.copr6279321 copr_base 222 k R-CRAN-rmio noarch 0.4.0-1.fc39.copr6285381 copr_base 33 k R-CRAN-roptim x86_64 0.1.6-1.fc39.copr6285852 copr_base 262 k R-CRAN-runonce noarch 0.2.3-1.fc39.copr6288014 copr_base 33 k R-CRAN-vctrs x86_64 0.6.4-1.fc39.copr6524681 copr_base 1.3 M R-core x86_64 4.3.2-1.fc39 updates 64 M R-devel x86_64 4.3.2-1.fc39 updates 10 k Installing dependencies: R-CRAN-DEoptimR noarch 1.1.3-1.fc39.copr6505367 copr_base 90 k R-CRAN-MASS x86_64 7.3.60-1.fc39.copr6282081 copr_base 1.2 M R-CRAN-R6 noarch 2.5.1-1.fc39.copr6279323 copr_base 96 k R-CRAN-RColorBrewer noarch 1.1.3-1.fc39.copr6279333 copr_base 65 k R-CRAN-RSpectra x86_64 0.16.1-1.fc39.copr6664807 copr_base 425 k R-CRAN-RhpcBLASctl x86_64 0.23.42-1.fc39.copr6281113 copr_base 28 k R-CRAN-bit x86_64 4.0.5-1.fc39.copr6279356 copr_base 1.1 M R-CRAN-cli x86_64 3.6.1-1.fc39.copr6279347 copr_base 1.3 M R-CRAN-codetools noarch 0.2.19-1.fc39.copr6282077 copr_base 103 k R-CRAN-colorspace x86_64 2.1.0-1.fc39.copr6279338 copr_base 2.4 M R-CRAN-cowplot noarch 1.1.1-1.fc39.copr6291051 copr_base 1.3 M R-CRAN-digest x86_64 0.6.33-1.fc39.copr6279309 copr_base 216 k R-CRAN-doParallel noarch 1.0.17-1.fc39.copr6285248 copr_base 195 k R-CRAN-fansi x86_64 1.0.5-1.fc39.copr6506680 copr_base 339 k R-CRAN-farver x86_64 2.1.1-1.fc39.copr6279385 copr_base 1.3 M R-CRAN-ff x86_64 4.0.9-1.fc39.copr6282915 copr_base 1.1 M R-CRAN-flock x86_64 0.7-3.fc39.copr6283008 copr_base 53 k R-CRAN-glue x86_64 1.6.2-1.fc39.copr6279303 copr_base 162 k R-CRAN-gtable noarch 0.3.4-1.fc39.copr6523581 copr_base 231 k R-CRAN-isoband x86_64 0.2.7-1.fc39.copr6280488 copr_base 1.6 M R-CRAN-iterators noarch 1.0.14-1.fc39.copr6279403 copr_base 348 k R-CRAN-labeling noarch 0.4.3-1.fc39.copr6354313 copr_base 77 k R-CRAN-lattice x86_64 0.22.5-1.fc39.copr6562879 copr_base 1.4 M R-CRAN-lifecycle noarch 1.0.4-1.fc39.copr6614518 copr_base 130 k R-CRAN-mgcv x86_64 1.9.0-1.fc39.copr6665186 copr_base 3.3 M R-CRAN-munsell noarch 0.5.0-3.fc39.copr6282866 copr_base 251 k R-CRAN-nabor x86_64 0.5.0-1.fc39.copr6286869 copr_base 165 k R-CRAN-nlme x86_64 3.1.163-1.fc39.copr6284604 copr_base 2.4 M R-CRAN-parallelly noarch 1.36.0-1.fc39.copr6282094 copr_base 389 k R-CRAN-pillar noarch 1.9.0-1.fc39.copr6286818 copr_base 626 k R-CRAN-pkgconfig noarch 2.0.3-3.fc39.copr6279322 copr_base 30 k R-CRAN-ps x86_64 1.7.5-1.fc39.copr6279341 copr_base 338 k R-CRAN-rlang x86_64 1.1.2-1.fc39.copr6598950 copr_base 1.6 M R-CRAN-rngtools noarch 1.5.2-1.fc39.copr6282932 copr_base 97 k R-CRAN-robustbase x86_64 0.99.0-1.fc39.copr6282926 copr_base 3.0 M R-CRAN-scales noarch 1.2.1-1.fc39.copr6285210 copr_base 638 k R-CRAN-tibble x86_64 3.2.1-1.fc39.copr6288598 copr_base 632 k R-CRAN-triebeard x86_64 0.4.1-1.fc39.copr6282958 copr_base 154 k R-CRAN-urltools x86_64 1.7.3-3.fc39.copr6285263 copr_base 271 k R-CRAN-utf8 x86_64 1.2.4-1.fc39.copr6555966 copr_base 150 k R-CRAN-viridisLite noarch 0.4.2-1.fc39.copr6279312 copr_base 1.2 M R-CRAN-withr noarch 2.5.2-1.fc39.copr6583488 copr_base 255 k R-core-devel x86_64 4.3.2-1.fc39 updates 93 k R-java x86_64 4.3.2-1.fc39 updates 11 k R-java-devel x86_64 4.3.2-1.fc39 updates 10 k R-littler x86_64 0.3.18-4.fc39 fedora 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.10-3.fc39 fedora 522 k annobin-docs noarch 12.30-1.fc39 updates 92 k annobin-plugin-gcc x86_64 12.30-1.fc39 updates 959 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-4.fc39 updates 11 M crypto-policies-scripts noarch 20231113-1.gitb402e82.fc39 updates 117 k cups-libs x86_64 1:2.4.7-2.fc39 updates 269 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.1-2.fc39 fedora 7.1 k expat x86_64 2.5.0-3.fc39 fedora 110 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-devel x86_64 3.3.1-5.fc39 fedora 117 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-netlib64 x86_64 3.3.1-5.fc39 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-5.fc39 fedora 17 k fontconfig x86_64 2.14.2-5.fc39 fedora 297 k fontconfig-devel x86_64 2.14.2-5.fc39 fedora 165 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-4.fc39 updates 34 M gcc-c++ x86_64 13.2.1-4.fc39 updates 13 M gcc-gfortran x86_64 13.2.1-4.fc39 updates 12 M gcc-plugin-annobin x86_64 13.2.1-4.fc39 updates 48 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.1-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.1-1.fc39 updates 595 k glibc-devel x86_64 2.38-10.fc39 updates 85 k glibc-headers-x86 noarch 2.38-10.fc39 updates 568 k gnutls x86_64 3.8.1-1.fc39 fedora 1.1 M google-noto-fonts-common noarch 20230801-4.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20230801-4.fc39 updates 583 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-17-openjdk x86_64 1:17.0.8.0.7-1.fc39 fedora 407 k java-17-openjdk-devel x86_64 1:17.0.8.0.7-1.fc39 fedora 4.7 M java-17-openjdk-headless x86_64 1:17.0.8.0.7-1.fc39 fedora 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.5.4-300.fc39 fedora 1.5 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.2-1.fc39 updates 122 k libRmath-devel x86_64 4.3.2-1.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.7-1.fc39 fedora 650 k libX11-common noarch 1.8.7-1.fc39 fedora 176 k libX11-devel x86_64 1.8.7-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.7-1.fc39 fedora 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.2-1.fc39 fedora 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.2.1-4.fc39 updates 900 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.2-1.fc39 fedora 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.2.1-4.fc39 updates 196 k libquadmath-devel x86_64 13.2.1-4.fc39 updates 38 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.2.1-4.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.4-0.fc39 updates 125 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-14.fc39 fedora 136 k nss x86_64 3.94.0-2.fc39 fedora 693 k nss-softokn x86_64 3.94.0-2.fc39 fedora 411 k nss-softokn-freebl x86_64 3.94.0-2.fc39 fedora 348 k nss-sysinit x86_64 3.94.0-2.fc39 fedora 18 k nss-util x86_64 3.94.0-2.fc39 fedora 87 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python3 x86_64 3.12.0-1.fc39 fedora 26 k python3-libs x86_64 3.12.0-1.fc39 fedora 9.2 M python3-setuptools noarch 67.7.2-7.fc39 fedora 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2023c-2.fc39 fedora 717 k tzdata-java noarch 2023c-2.fc39 fedora 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ======================================================================================== Install 216 Packages Total download size: 315 M Installed size: 937 M Downloading Packages: (1/216): R-CRAN-DEoptimR-1.1.3-1.fc39.copr65053 4.3 MB/s | 90 kB 00:00 (2/216): R-CRAN-MASS-7.3.60-1.fc39.copr6282081. 40 MB/s | 1.2 MB 00:00 (3/216): R-CRAN-R6-2.5.1-1.fc39.copr6279323.noa 9.7 MB/s | 96 kB 00:00 (4/216): R-CRAN-Matrix-1.6.3-1.fc39.copr6636945 118 MB/s | 4.1 MB 00:00 (5/216): R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6 15 MB/s | 65 kB 00:00 (6/216): R-CRAN-RSpectra-0.16.1-1.fc39.copr6664 85 MB/s | 425 kB 00:00 (7/216): R-CRAN-RhpcBLASctl-0.23.42-1.fc39.copr 6.7 MB/s | 28 kB 00:00 (8/216): R-CRAN-RcppArmadillo-0.12.6.6.0-1.fc39 77 MB/s | 935 kB 00:00 (9/216): R-CRAN-bigassertr-0.1.6-1.fc39.copr628 5.9 MB/s | 45 kB 00:00 (10/216): R-CRAN-Rcpp-1.0.11-1.fc39.copr6279302 51 MB/s | 2.0 MB 00:00 (11/216): R-CRAN-bigparallelr-0.3.2-1.fc39.copr 174 kB/s | 57 kB 00:00 (12/216): R-CRAN-bigreadr-0.2.5-1.fc39.copr6283 563 kB/s | 186 kB 00:00 (13/216): R-CRAN-bigstatsr-1.5.12-1.fc39.copr62 9.1 MB/s | 1.3 MB 00:00 (14/216): R-CRAN-bit-4.0.5-1.fc39.copr6279356.x 251 MB/s | 1.1 MB 00:00 (15/216): R-CRAN-cli-3.6.1-1.fc39.copr6279347.x 196 MB/s | 1.3 MB 00:00 (16/216): R-CRAN-codetools-0.2.19-1.fc39.copr62 62 MB/s | 103 kB 00:00 (17/216): R-CRAN-colorspace-2.1.0-1.fc39.copr62 258 MB/s | 2.4 MB 00:00 (18/216): R-CRAN-cowplot-1.1.1-1.fc39.copr62910 169 MB/s | 1.3 MB 00:00 (19/216): R-CRAN-data.table-1.14.8-1.fc39.copr6 84 MB/s | 1.9 MB 00:00 (20/216): R-CRAN-digest-0.6.33-1.fc39.copr62793 110 MB/s | 216 kB 00:00 (21/216): R-CRAN-doParallel-1.0.17-1.fc39.copr6 79 MB/s | 195 kB 00:00 (22/216): R-CRAN-doRNG-1.8.6-1.fc39.copr6285378 102 MB/s | 309 kB 00:00 (23/216): R-CRAN-fansi-1.0.5-1.fc39.copr6506680 166 MB/s | 339 kB 00:00 (24/216): R-CRAN-farver-2.1.1-1.fc39.copr627938 338 MB/s | 1.3 MB 00:00 (25/216): R-CRAN-bigsparser-0.6.1-1.fc39.copr66 493 kB/s | 253 kB 00:00 (26/216): R-CRAN-ff-4.0.9-1.fc39.copr6282915.x8 263 MB/s | 1.1 MB 00:00 (27/216): R-CRAN-foreach-1.5.2-1.fc39.copr62829 106 MB/s | 143 kB 00:00 (28/216): R-CRAN-ggplot2-3.4.4-1.fc39.copr65246 283 MB/s | 4.2 MB 00:00 (29/216): R-CRAN-glue-1.6.2-1.fc39.copr6279303. 111 MB/s | 162 kB 00:00 (30/216): R-CRAN-gtable-0.3.4-1.fc39.copr652358 151 MB/s | 231 kB 00:00 (31/216): R-CRAN-isoband-0.2.7-1.fc39.copr62804 377 MB/s | 1.6 MB 00:00 (32/216): R-CRAN-iterators-1.0.14-1.fc39.copr62 155 MB/s | 348 kB 00:00 (33/216): R-CRAN-labeling-0.4.3-1.fc39.copr6354 70 MB/s 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Running transaction test Transaction test succeeded. 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R-CRAN-DEoptimR-1.1.3-1.fc39.copr6505367.noarch 1/216 Verifying : R-CRAN-MASS-7.3.60-1.fc39.copr6282081.x86_64 2/216 Verifying : R-CRAN-Matrix-1.6.3-1.fc39.copr6636945.x86_64 3/216 Verifying : R-CRAN-R6-2.5.1-1.fc39.copr6279323.noarch 4/216 Verifying : R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6279333.noa 5/216 Verifying : R-CRAN-RSpectra-0.16.1-1.fc39.copr6664807.x86_64 6/216 Verifying : R-CRAN-Rcpp-1.0.11-1.fc39.copr6279302.x86_64 7/216 Verifying : R-CRAN-RcppArmadillo-0.12.6.6.0-1.fc39.copr65897 8/216 Verifying : R-CRAN-RhpcBLASctl-0.23.42-1.fc39.copr6281113.x8 9/216 Verifying : R-CRAN-bigassertr-0.1.6-1.fc39.copr6281167.noarc 10/216 Verifying : R-CRAN-bigparallelr-0.3.2-1.fc39.copr6287477.noa 11/216 Verifying : R-CRAN-bigreadr-0.2.5-1.fc39.copr6283207.x86_64 12/216 Verifying : R-CRAN-bigsparser-0.6.1-1.fc39.copr6665130.x86_6 13/216 Verifying : R-CRAN-bigstatsr-1.5.12-1.fc39.copr6293679.x86_6 14/216 Verifying : R-CRAN-bigutilsr-0.3.4-1.fc39.copr6289130.x86_64 15/216 Verifying : 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R-CRAN-glue-1.6.2-1.fc39.copr6279303.x86_64 31/216 Verifying : R-CRAN-gtable-0.3.4-1.fc39.copr6523581.noarch 32/216 Verifying : R-CRAN-isoband-0.2.7-1.fc39.copr6280488.x86_64 33/216 Verifying : R-CRAN-iterators-1.0.14-1.fc39.copr6279403.noarc 34/216 Verifying : R-CRAN-labeling-0.4.3-1.fc39.copr6354313.noarch 35/216 Verifying : R-CRAN-lattice-0.22.5-1.fc39.copr6562879.x86_64 36/216 Verifying : R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch 37/216 Verifying : R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64 38/216 Verifying : R-CRAN-mgcv-1.9.0-1.fc39.copr6665186.x86_64 39/216 Verifying : R-CRAN-munsell-0.5.0-3.fc39.copr6282866.noarch 40/216 Verifying : R-CRAN-nabor-0.5.0-1.fc39.copr6286869.x86_64 41/216 Verifying : R-CRAN-nlme-3.1.163-1.fc39.copr6284604.x86_64 42/216 Verifying : R-CRAN-parallelly-1.36.0-1.fc39.copr6282094.noar 43/216 Verifying : R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch 44/216 Verifying : R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch 45/216 Verifying : R-CRAN-ps-1.7.5-1.fc39.copr6279341.x86_64 46/216 Verifying : R-CRAN-rlang-1.1.2-1.fc39.copr6598950.x86_64 47/216 Verifying : R-CRAN-rmio-0.4.0-1.fc39.copr6285381.noarch 48/216 Verifying : R-CRAN-rngtools-1.5.2-1.fc39.copr6282932.noarch 49/216 Verifying : R-CRAN-robustbase-0.99.0-1.fc39.copr6282926.x86_ 50/216 Verifying : R-CRAN-roptim-0.1.6-1.fc39.copr6285852.x86_64 51/216 Verifying : R-CRAN-runonce-0.2.3-1.fc39.copr6288014.noarch 52/216 Verifying : R-CRAN-scales-1.2.1-1.fc39.copr6285210.noarch 53/216 Verifying : R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 54/216 Verifying : R-CRAN-triebeard-0.4.1-1.fc39.copr6282958.x86_64 55/216 Verifying : R-CRAN-urltools-1.7.3-3.fc39.copr6285263.x86_64 56/216 Verifying : R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 57/216 Verifying : R-CRAN-vctrs-0.6.4-1.fc39.copr6524681.x86_64 58/216 Verifying : R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noar 59/216 Verifying : R-CRAN-withr-2.5.2-1.fc39.copr6583488.noarch 60/216 Verifying : R-littler-0.3.18-4.fc39.x86_64 61/216 Verifying : R-rpm-macros-1.2.1-7.fc39.noarch 62/216 Verifying : abattis-cantarell-vf-fonts-0.301-10.fc39.noarch 63/216 Verifying : alsa-lib-1.2.10-3.fc39.x86_64 64/216 Verifying : avahi-libs-0.8-24.fc39.x86_64 65/216 Verifying : brotli-1.1.0-1.fc39.x86_64 66/216 Verifying : brotli-devel-1.1.0-1.fc39.x86_64 67/216 Verifying : bzip2-devel-1.0.8-16.fc39.x86_64 68/216 Verifying : cairo-1.18.0-1.fc39.x86_64 69/216 Verifying : cmake-filesystem-3.27.7-1.fc39.x86_64 70/216 Verifying : copy-jdk-configs-4.1-3.fc39.noarch 71/216 Verifying : dbus-libs-1:1.14.10-1.fc39.x86_64 72/216 Verifying : default-fonts-core-sans-4.0-9.fc39.noarch 73/216 Verifying : desktop-file-utils-0.26-9.fc39.x86_64 74/216 Verifying : emacs-filesystem-1:29.1-2.fc39.noarch 75/216 Verifying : expat-2.5.0-3.fc39.x86_64 76/216 Verifying : flexiblas-3.3.1-5.fc39.x86_64 77/216 Verifying : flexiblas-devel-3.3.1-5.fc39.x86_64 78/216 Verifying : flexiblas-netlib-3.3.1-5.fc39.x86_64 79/216 Verifying : flexiblas-netlib64-3.3.1-5.fc39.x86_64 80/216 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 81/216 Verifying : flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 82/216 Verifying : fontconfig-2.14.2-5.fc39.x86_64 83/216 Verifying : fontconfig-devel-2.14.2-5.fc39.x86_64 84/216 Verifying : fonts-filesystem-1:2.0.5-12.fc39.noarch 85/216 Verifying : freetype-2.13.1-2.fc39.x86_64 86/216 Verifying : freetype-devel-2.13.1-2.fc39.x86_64 87/216 Verifying : fribidi-1.0.13-2.fc39.x86_64 88/216 Verifying : gc-8.2.2-4.fc39.x86_64 89/216 Verifying : gettext-0.22-2.fc39.x86_64 90/216 Verifying : gettext-envsubst-0.22-2.fc39.x86_64 91/216 Verifying : gettext-libs-0.22-2.fc39.x86_64 92/216 Verifying : gettext-runtime-0.22-2.fc39.x86_64 93/216 Verifying : gnutls-3.8.1-1.fc39.x86_64 94/216 Verifying : graphite2-1.3.14-12.fc39.x86_64 95/216 Verifying : graphite2-devel-1.3.14-12.fc39.x86_64 96/216 Verifying : guile22-2.2.7-9.fc39.x86_64 97/216 Verifying : harfbuzz-8.2.1-2.fc39.x86_64 98/216 Verifying : harfbuzz-devel-8.2.1-2.fc39.x86_64 99/216 Verifying : harfbuzz-icu-8.2.1-2.fc39.x86_64 100/216 Verifying : java-17-openjdk-1:17.0.8.0.7-1.fc39.x86_64 101/216 Verifying : java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.x86_64 102/216 Verifying : java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.x86 103/216 Verifying : javapackages-filesystem-6.1.0-10.fc39.noarch 104/216 Verifying : jbigkit-libs-2.1-26.fc39.x86_64 105/216 Verifying : kernel-headers-6.5.4-300.fc39.x86_64 106/216 Verifying : libICE-1.0.10-11.fc39.x86_64 107/216 Verifying : libSM-1.2.3-13.fc39.x86_64 108/216 Verifying : libX11-1.8.7-1.fc39.x86_64 109/216 Verifying : libX11-common-1.8.7-1.fc39.noarch 110/216 Verifying : libX11-devel-1.8.7-1.fc39.x86_64 111/216 Verifying : libX11-xcb-1.8.7-1.fc39.x86_64 112/216 Verifying : libXau-1.0.11-3.fc39.x86_64 113/216 Verifying : libXau-devel-1.0.11-3.fc39.x86_64 114/216 Verifying : libXcomposite-0.4.5-10.fc39.x86_64 115/216 Verifying : libXext-1.3.5-3.fc39.x86_64 116/216 Verifying : libXft-2.3.8-3.fc39.x86_64 117/216 Verifying : libXft-devel-2.3.8-3.fc39.x86_64 118/216 Verifying : libXi-1.8.1-2.fc39.x86_64 119/216 Verifying : libXmu-1.1.4-3.fc39.x86_64 120/216 Verifying : libXrender-0.9.11-3.fc39.x86_64 121/216 Verifying : libXrender-devel-0.9.11-3.fc39.x86_64 122/216 Verifying : libXt-1.2.1-5.fc39.x86_64 123/216 Verifying : libXtst-1.2.4-3.fc39.x86_64 124/216 Verifying : libb2-0.98.1-9.fc39.x86_64 125/216 Verifying : libblkid-devel-2.39.2-1.fc39.x86_64 126/216 Verifying : libdatrie-0.2.13-7.fc39.x86_64 127/216 Verifying : libffi-devel-3.4.4-4.fc39.x86_64 128/216 Verifying : libfontenc-1.1.6-3.fc39.x86_64 129/216 Verifying : libicu-73.2-2.fc39.x86_64 130/216 Verifying : libicu-devel-73.2-2.fc39.x86_64 131/216 Verifying : libjpeg-turbo-2.1.4-3.fc39.x86_64 132/216 Verifying : liblerc-4.0.0-4.fc39.x86_64 133/216 Verifying : libmount-devel-2.39.2-1.fc39.x86_64 134/216 Verifying : libmpc-1.3.1-3.fc39.x86_64 135/216 Verifying : libpng-2:1.6.37-15.fc39.x86_64 136/216 Verifying : libpng-devel-2:1.6.37-15.fc39.x86_64 137/216 Verifying : libselinux-devel-3.5-5.fc39.x86_64 138/216 Verifying : libsepol-devel-3.5-2.fc39.x86_64 139/216 Verifying : libthai-0.1.29-6.fc39.x86_64 140/216 Verifying : libtiff-4.4.0-8.fc39.x86_64 141/216 Verifying : libtool-ltdl-2.4.7-7.fc39.x86_64 142/216 Verifying : libwebp-1.3.2-2.fc39.x86_64 143/216 Verifying : libxcb-1.13.1-12.fc39.x86_64 144/216 Verifying : libxcb-devel-1.13.1-12.fc39.x86_64 145/216 Verifying : libxcrypt-devel-4.4.36-2.fc39.x86_64 146/216 Verifying : libxml2-devel-2.10.4-3.fc39.x86_64 147/216 Verifying : lksctp-tools-1.0.19-4.fc39.x86_64 148/216 Verifying : lua-5.4.6-3.fc39.x86_64 149/216 Verifying : lua-posix-36.2.1-3.fc39.x86_64 150/216 Verifying : make-1:4.4.1-2.fc39.x86_64 151/216 Verifying : mkfontscale-1.2.2-4.fc39.x86_64 152/216 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 153/216 Verifying : nettle-3.9.1-2.fc39.x86_64 154/216 Verifying : nspr-4.35.0-14.fc39.x86_64 155/216 Verifying : nss-3.94.0-2.fc39.x86_64 156/216 Verifying : nss-softokn-3.94.0-2.fc39.x86_64 157/216 Verifying : nss-softokn-freebl-3.94.0-2.fc39.x86_64 158/216 Verifying : nss-sysinit-3.94.0-2.fc39.x86_64 159/216 Verifying : nss-util-3.94.0-2.fc39.x86_64 160/216 Verifying : openblas-0.3.21-6.fc39.x86_64 161/216 Verifying : openblas-openmp-0.3.21-6.fc39.x86_64 162/216 Verifying : openblas-openmp64-0.3.21-6.fc39.x86_64 163/216 Verifying : pango-1.51.0-1.fc39.x86_64 164/216 Verifying : pcre2-devel-10.42-1.fc39.2.x86_64 165/216 Verifying : pcre2-utf16-10.42-1.fc39.2.x86_64 166/216 Verifying : pcre2-utf32-10.42-1.fc39.2.x86_64 167/216 Verifying : pixman-0.42.2-2.fc39.x86_64 168/216 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 169/216 Verifying : python3-3.12.0-1.fc39.x86_64 170/216 Verifying : python3-libs-3.12.0-1.fc39.x86_64 171/216 Verifying : python3-setuptools-67.7.2-7.fc39.noarch 172/216 Verifying : tcl-1:8.6.12-5.fc39.x86_64 173/216 Verifying : tcl-devel-1:8.6.12-5.fc39.x86_64 174/216 Verifying : tk-1:8.6.12-5.fc39.x86_64 175/216 Verifying : tk-devel-1:8.6.12-5.fc39.x86_64 176/216 Verifying : tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 177/216 Verifying : tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noar 178/216 Verifying : tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_6 179/216 Verifying : ttmkfdir-3.0.9-69.fc39.x86_64 180/216 Verifying : tzdata-2023c-2.fc39.noarch 181/216 Verifying : tzdata-java-2023c-2.fc39.noarch 182/216 Verifying : xdg-utils-1.1.3-15.fc39.noarch 183/216 Verifying : xml-common-0.6.3-61.fc39.noarch 184/216 Verifying : xorg-x11-fonts-Type1-7.5-36.fc39.noarch 185/216 Verifying : xorg-x11-proto-devel-2023.2-2.fc39.noarch 186/216 Verifying : xz-devel-5.4.4-1.fc39.x86_64 187/216 Verifying : zlib-devel-1.2.13-4.fc39.x86_64 188/216 Verifying : R-core-4.3.2-1.fc39.x86_64 189/216 Verifying : R-core-devel-4.3.2-1.fc39.x86_64 190/216 Verifying : R-devel-4.3.2-1.fc39.x86_64 191/216 Verifying : R-java-4.3.2-1.fc39.x86_64 192/216 Verifying : R-java-devel-4.3.2-1.fc39.x86_64 193/216 Verifying : annobin-docs-12.30-1.fc39.noarch 194/216 Verifying : annobin-plugin-gcc-12.30-1.fc39.x86_64 195/216 Verifying : cpp-13.2.1-4.fc39.x86_64 196/216 Verifying : crypto-policies-scripts-20231113-1.gitb402e82.fc 197/216 Verifying : cups-libs-1:2.4.7-2.fc39.x86_64 198/216 Verifying : gcc-13.2.1-4.fc39.x86_64 199/216 Verifying : gcc-c++-13.2.1-4.fc39.x86_64 200/216 Verifying : gcc-gfortran-13.2.1-4.fc39.x86_64 201/216 Verifying : gcc-plugin-annobin-13.2.1-4.fc39.x86_64 202/216 Verifying : glib2-2.78.1-1.fc39.x86_64 203/216 Verifying : glib2-devel-2.78.1-1.fc39.x86_64 204/216 Verifying : glibc-devel-2.38-10.fc39.x86_64 205/216 Verifying : glibc-headers-x86-2.38-10.fc39.noarch 206/216 Verifying : google-noto-fonts-common-20230801-4.fc39.noarch 207/216 Verifying : google-noto-sans-vf-fonts-20230801-4.fc39.noarch 208/216 Verifying : libRmath-4.3.2-1.fc39.x86_64 209/216 Verifying : libRmath-devel-4.3.2-1.fc39.x86_64 210/216 Verifying : libgfortran-13.2.1-4.fc39.x86_64 211/216 Verifying : libquadmath-13.2.1-4.fc39.x86_64 212/216 Verifying : libquadmath-devel-13.2.1-4.fc39.x86_64 213/216 Verifying : libstdc++-devel-13.2.1-4.fc39.x86_64 214/216 Verifying : libtirpc-devel-1.3.4-0.fc39.x86_64 215/216 Verifying : sysprof-capture-devel-45.1-1.fc39.x86_64 216/216 Installed products updated. Installed: R-CRAN-DEoptimR-1.1.3-1.fc39.copr6505367.noarch R-CRAN-MASS-7.3.60-1.fc39.copr6282081.x86_64 R-CRAN-Matrix-1.6.3-1.fc39.copr6636945.x86_64 R-CRAN-R6-2.5.1-1.fc39.copr6279323.noarch R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6279333.noarch R-CRAN-RSpectra-0.16.1-1.fc39.copr6664807.x86_64 R-CRAN-Rcpp-1.0.11-1.fc39.copr6279302.x86_64 R-CRAN-RcppArmadillo-0.12.6.6.0-1.fc39.copr6589779.x86_64 R-CRAN-RhpcBLASctl-0.23.42-1.fc39.copr6281113.x86_64 R-CRAN-bigassertr-0.1.6-1.fc39.copr6281167.noarch R-CRAN-bigparallelr-0.3.2-1.fc39.copr6287477.noarch R-CRAN-bigreadr-0.2.5-1.fc39.copr6283207.x86_64 R-CRAN-bigsparser-0.6.1-1.fc39.copr6665130.x86_64 R-CRAN-bigstatsr-1.5.12-1.fc39.copr6293679.x86_64 R-CRAN-bigutilsr-0.3.4-1.fc39.copr6289130.x86_64 R-CRAN-bit-4.0.5-1.fc39.copr6279356.x86_64 R-CRAN-cli-3.6.1-1.fc39.copr6279347.x86_64 R-CRAN-codetools-0.2.19-1.fc39.copr6282077.noarch R-CRAN-colorspace-2.1.0-1.fc39.copr6279338.x86_64 R-CRAN-cowplot-1.1.1-1.fc39.copr6291051.noarch R-CRAN-data.table-1.14.8-1.fc39.copr6279367.x86_64 R-CRAN-digest-0.6.33-1.fc39.copr6279309.x86_64 R-CRAN-doParallel-1.0.17-1.fc39.copr6285248.noarch R-CRAN-doRNG-1.8.6-1.fc39.copr6285378.noarch R-CRAN-fansi-1.0.5-1.fc39.copr6506680.x86_64 R-CRAN-farver-2.1.1-1.fc39.copr6279385.x86_64 R-CRAN-ff-4.0.9-1.fc39.copr6282915.x86_64 R-CRAN-flock-0.7-3.fc39.copr6283008.x86_64 R-CRAN-foreach-1.5.2-1.fc39.copr6282916.noarch R-CRAN-ggplot2-3.4.4-1.fc39.copr6524688.noarch R-CRAN-glue-1.6.2-1.fc39.copr6279303.x86_64 R-CRAN-gtable-0.3.4-1.fc39.copr6523581.noarch R-CRAN-isoband-0.2.7-1.fc39.copr6280488.x86_64 R-CRAN-iterators-1.0.14-1.fc39.copr6279403.noarch R-CRAN-labeling-0.4.3-1.fc39.copr6354313.noarch R-CRAN-lattice-0.22.5-1.fc39.copr6562879.x86_64 R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64 R-CRAN-mgcv-1.9.0-1.fc39.copr6665186.x86_64 R-CRAN-munsell-0.5.0-3.fc39.copr6282866.noarch R-CRAN-nabor-0.5.0-1.fc39.copr6286869.x86_64 R-CRAN-nlme-3.1.163-1.fc39.copr6284604.x86_64 R-CRAN-parallelly-1.36.0-1.fc39.copr6282094.noarch R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch R-CRAN-ps-1.7.5-1.fc39.copr6279341.x86_64 R-CRAN-rlang-1.1.2-1.fc39.copr6598950.x86_64 R-CRAN-rmio-0.4.0-1.fc39.copr6285381.noarch R-CRAN-rngtools-1.5.2-1.fc39.copr6282932.noarch R-CRAN-robustbase-0.99.0-1.fc39.copr6282926.x86_64 R-CRAN-roptim-0.1.6-1.fc39.copr6285852.x86_64 R-CRAN-runonce-0.2.3-1.fc39.copr6288014.noarch R-CRAN-scales-1.2.1-1.fc39.copr6285210.noarch R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 R-CRAN-triebeard-0.4.1-1.fc39.copr6282958.x86_64 R-CRAN-urltools-1.7.3-3.fc39.copr6285263.x86_64 R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 R-CRAN-vctrs-0.6.4-1.fc39.copr6524681.x86_64 R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noarch R-CRAN-withr-2.5.2-1.fc39.copr6583488.noarch R-core-4.3.2-1.fc39.x86_64 R-core-devel-4.3.2-1.fc39.x86_64 R-devel-4.3.2-1.fc39.x86_64 R-java-4.3.2-1.fc39.x86_64 R-java-devel-4.3.2-1.fc39.x86_64 R-littler-0.3.18-4.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.10-3.fc39.x86_64 annobin-docs-12.30-1.fc39.noarch annobin-plugin-gcc-12.30-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.27.7-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-4.fc39.x86_64 crypto-policies-scripts-20231113-1.gitb402e82.fc39.noarch cups-libs-1:2.4.7-2.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.1-2.fc39.noarch expat-2.5.0-3.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-devel-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-netlib64-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 fontconfig-2.14.2-5.fc39.x86_64 fontconfig-devel-2.14.2-5.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-4.fc39.x86_64 gcc-c++-13.2.1-4.fc39.x86_64 gcc-gfortran-13.2.1-4.fc39.x86_64 gcc-plugin-annobin-13.2.1-4.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.1-1.fc39.x86_64 glib2-devel-2.78.1-1.fc39.x86_64 glibc-devel-2.38-10.fc39.x86_64 glibc-headers-x86-2.38-10.fc39.noarch gnutls-3.8.1-1.fc39.x86_64 google-noto-fonts-common-20230801-4.fc39.noarch google-noto-sans-vf-fonts-20230801-4.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-17-openjdk-1:17.0.8.0.7-1.fc39.x86_64 java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.x86_64 java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.5.4-300.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.2-1.fc39.x86_64 libRmath-devel-4.3.2-1.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.7-1.fc39.x86_64 libX11-common-1.8.7-1.fc39.noarch libX11-devel-1.8.7-1.fc39.x86_64 libX11-xcb-1.8.7-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.2-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.2.1-4.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.2-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.2.1-4.fc39.x86_64 libquadmath-devel-13.2.1-4.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.2.1-4.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc39.x86_64 libtirpc-devel-1.3.4-0.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.19-4.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-14.fc39.x86_64 nss-3.94.0-2.fc39.x86_64 nss-softokn-3.94.0-2.fc39.x86_64 nss-softokn-freebl-3.94.0-2.fc39.x86_64 nss-sysinit-3.94.0-2.fc39.x86_64 nss-util-3.94.0-2.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.0-1.fc39.x86_64 python3-libs-3.12.0-1.fc39.x86_64 python3-setuptools-67.7.2-7.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2023c-2.fc39.noarch tzdata-java-2023c-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm Start: rpmbuild R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.oJF4Sb + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bigsnpr + /usr/bin/mkdir -p bigsnpr + cd bigsnpr + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bigsnpr_1.12.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/bigsnpr-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/bigsnpr-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d bigsnpr/src ']' + find bigsnpr/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d bigsnpr/src ']' + find bigsnpr/src/Makevars -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.WjopjJ + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bigsnpr + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fXa5Eo + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bigsnpr + mkdir -p /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64/usr/local/lib/R/library bigsnpr * installing *source* package ‘bigsnpr’ ... ** package ‘bigsnpr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-acc-xptr.cpp -o bed-acc-xptr.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-fun.cpp -o bed-fun.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-mat-acc.cpp -o bed-mat-acc.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bed-prod-vec.cpp -o bed-prod-vec.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clumping-bed.cpp -o clumping-bed.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clumping-cached.cpp -o clumping-cached.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c clumping.cpp -o clumping.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c colstats.cpp -o colstats.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c copy-subset.cpp -o copy-subset.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c corr.cpp -o corr.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c corr_with_cov.cpp -o corr_with_cov.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c impute-simple.cpp -o impute-simple.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lassosum2.cpp -o lassosum2.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ld-scores-sfbm.cpp -o ld-scores-sfbm.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ld-scores.cpp -o ld-scores.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ldpred2-auto.cpp -o ldpred2-auto.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ldpred2-sampling.cpp -o ldpred2-sampling.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ldpred2.cpp -o ldpred2.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c multLinReg.cpp -o multLinReg.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c prod-bgen.cpp -o prod-bgen.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read-bgen.cpp -o read-bgen.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read-plink.cpp -o read-plink.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sp-colsumssq-sym.cpp -o sp-colsumssq-sym.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c split-LD.cpp -o split-LD.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/bigsparser/include' -I'/usr/local/lib/R/library/bigstatsr/include' -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/rmio/include' -I'/usr/local/lib/R/library/roptim/include' -I/usr/local/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c write-plink.cpp -o write-plink.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o bigsnpr.so RcppExports.o bed-acc-xptr.o bed-fun.o bed-mat-acc.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o corr_with_cov.o impute-simple.o lassosum2.o ld-scores-sfbm.o ld-scores.o ldpred2-auto.o ldpred2-sampling.o ldpred2.o multLinReg.o prod-bgen.o read-bgen.o read-plink.o sp-colsumssq-sym.o split-LD.o write-plink.o -fopenmp -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -lz -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64/usr/local/lib/R/library/00LOCK-bigsnpr/00new/bigsnpr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘bigsnpr’ finding HTML links ... done LD.wiki34 html LDpred2 html finding level-2 HTML links ... done SCT html bed-class html bed-methods html bed_MAF html bed_counts html bed_cprodVec html bed_prodVec html bed_projectPCA html bed_projectSelfPCA html bed_randomSVD html bed_scaleBinom html bed_tcrossprodSelf html bigSNP-class html bigsnpr-package html coef_to_liab html download_1000G html download_beagle html download_plink html reexports html same_ref html seq_log html snp_MAF html snp_MAX3 html snp_PRS html snp_ancestry_summary html snp_asGeneticPos html snp_attach html snp_attachExtdata html snp_autoSVD html snp_beagleImpute html snp_clumping html snp_codes html snp_cor html snp_fake html snp_fastImpute html snp_fastImputeSimple html snp_fst html snp_gc html snp_getSampleInfos html snp_lassosum2 html snp_ld_scores html snp_ldsc html snp_ldsplit html snp_manhattan html snp_match html snp_modifyBuild html snp_pcadapt html snp_plinkIBDQC html snp_plinkKINGQC html snp_plinkQC html snp_plinkRmSamples html snp_prodBGEN html snp_qq html snp_readBGEN html snp_readBGI html snp_readBed html snp_save html snp_scaleBinom html snp_simuPheno html snp_split html snp_subset html snp_thr_correct html snp_writeBed html sub-bed-ANY-ANY-ANY-method html sub_bed html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigsnpr) + test -d bigsnpr/src + cd bigsnpr/src + rm -f RcppExports.o bed-acc-xptr.o bed-fun.o bed-mat-acc.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o corr_with_cov.o impute-simple.o lassosum2.o ld-scores-sfbm.o ld-scores.o ldpred2-auto.o ldpred2-sampling.o ldpred2.o multLinReg.o prod-bgen.o read-bgen.o read-plink.o sp-colsumssq-sym.o split-LD.o write-plink.o bigsnpr.so + rm -f /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.12.2-1.fc39.copr6665643 --unique-debug-suffix -1.12.2-1.fc39.copr6665643.x86_64 --unique-debug-src-base R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bigsnpr find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 228 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 Provides: R-CRAN-bigsnpr = 1.12.2-1.fc39.copr6665643 R-CRAN-bigsnpr(x86-64) = 1.12.2-1.fc39.copr6665643 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-CRAN-bigsnpr-debugsource-1.12.2-1.fc39.copr6665643.x86_64 Provides: R-CRAN-bigsnpr-debugsource = 1.12.2-1.fc39.copr6665643 R-CRAN-bigsnpr-debugsource(x86-64) = 1.12.2-1.fc39.copr6665643 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-bigsnpr-debuginfo-1.12.2-1.fc39.copr6665643.x86_64 Provides: R-CRAN-bigsnpr-debuginfo = 1.12.2-1.fc39.copr6665643 R-CRAN-bigsnpr-debuginfo(x86-64) = 1.12.2-1.fc39.copr6665643 debuginfo(build-id) = 73ea8a62253657792999463a1370cf749fdd0124 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-bigsnpr-debugsource(x86-64) = 1.12.2-1.fc39.copr6665643 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-bigsnpr-debugsource-1.12.2-1.fc39.copr6665643.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-bigsnpr-debuginfo-1.12.2-1.fc39.copr6665643.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.AnZnyZ + umask 022 + cd /builddir/build/BUILD + cd bigsnpr + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Ga2URZ + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/bigsnpr-SPECPARTS + rm -rf bigsnpr bigsnpr.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm Finish: build phase for R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1700319849.219098/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1700319849.219098/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1700319849.219098/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-bigsnpr-1.12.2-1.fc39.copr6665643.src.rpm) Config(child) 1 minutes 53 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-bigsnpr", "epoch": null, "version": "1.12.2", "release": "1.fc39.copr6665643", "arch": "src" }, { "name": "R-CRAN-bigsnpr", "epoch": null, "version": "1.12.2", "release": "1.fc39.copr6665643", "arch": "x86_64" }, { "name": "R-CRAN-bigsnpr-debugsource", "epoch": null, "version": "1.12.2", "release": "1.fc39.copr6665643", "arch": "x86_64" }, { "name": "R-CRAN-bigsnpr-debuginfo", "epoch": null, "version": "1.12.2", "release": "1.fc39.copr6665643", "arch": "x86_64" } ] } RPMResults finished