residuecount {seqinr} | R Documentation |
Computes the total number of residues (nucleotides or aminoacids) in all sequences of the list of specified rank.
residuecount(lrank, socket = autosocket())
lrank |
the list rank on the ACNUC server |
socket |
an object of class |
A single numeric value corresponding to the total number of residues or NA in case of problem.
J.R. Lobry
https://doua.prabi.fr/databases/acnuc.html
citation("seqinr")
## Not run:
### Need internet connection
choosebank("emblTP")
mylist <- query("mylist", "t=CDS", virtual = TRUE)
stopifnot(residuecount(glr("mylist")) == 1611439240)
stopifnot(is.na(residuecount(glr("unknowlist")))) # A warning is issued
## End(Not run)