init.parsimonyNumber {PhylogeneticEM} | R Documentation |
init.parsimonyNumber
initialize a (ntaxa + Nnode)x(nclus) matrix with
NAs everywhere, except for the tips.
init.parsimonyNumber(phy, clusters)
phy |
phylogenetic tree. |
clusters |
the vector of the clusters of the tips. |
At a tip i in state k, the line-vector is initialized as follow : Ind(k=p)_{1<=p<=nclus}
A (ntaxa + Nnode)x(nclus) matrix, with ntaxa first lines initialized as described.