rba_uniprot_taxonomy_path {rbioapi} | R Documentation |
Using this function you can retrieve nodes that are located in the top or the bottom of your supplied node in UniProt Taxonomy database tree
rba_uniprot_taxonomy_path(id, direction, depth = 5, ...)
id |
(numeric) a NCBI taxonomic identifier |
direction |
direction of the taxonomic path, either "TOP" or "BOTTOM". |
depth |
(numeric) How many levels should be traversed on the taxonomic tree? (from 1 to 5, default = 5) |
... |
rbioapi option(s). See |
a nested list containing the node which are in the path specified by your supplied argument in the UniProt taxonomic tree.
"GET https://ebi.ac.uk/proteins/api/path"
The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Other "UniProt - Taxonomy":
rba_uniprot_taxonomy()
,
rba_uniprot_taxonomy_lca()
,
rba_uniprot_taxonomy_lineage()
,
rba_uniprot_taxonomy_name()
,
rba_uniprot_taxonomy_relationship()
rba_uniprot_taxonomy_path(id = 9606, direction = "TOP", depth = 3)
rba_uniprot_taxonomy_path(id = 207598, direction = "BOTTOM", depth = 3)