hss {hsphase} | R Documentation |
Half-sib Family Splitter
Description
Splits the dataset into half-sib family groups based on a pedigree.
Usage
hss(pedigree, genotype, check = TRUE)
Arguments
pedigree |
matrix the pedigree matrix should contain at least two columns, the first column with the half-sib IDs
and the second column with the sires IDs
|
genotype |
matrix genotype matrix with SNP ordered by mapping position in the columns. Data should be numeric. Use 0, 1 and 2 respectively for AA, AB and BB. Use 9 for missing data
|
check |
logical check the genotype file for the possible errors
|
Details
Only half-sib groups that have more than 3 individuals will be returned.
Value
Returns a list of numeric matrices, each matrix is a half-sib family.
Note
Pedigree must have at least two columns with sample ids (Column 1) and sire ids (Column 2).
Examples
# Please run demo(hsphase)
[Package
hsphase version 2.0.3
Index]