Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c189' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7307487-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.72 PID: 18003 Logging PID: 18004 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 7307487, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd1e3a20abb8630b301f04017387ee4b32da30429', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-sommer', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-sommer', 'package_version': '4.3.4-1.copr7307487', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '7307487-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-sommer /var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-sommer', '/var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer'... Running: git checkout d1e3a20abb8630b301f04017387ee4b32da30429 -- cmd: ['git', 'checkout', 'd1e3a20abb8630b301f04017387ee4b32da30429', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer rc: 0 stdout: stderr: Note: switching to 'd1e3a20abb8630b301f04017387ee4b32da30429'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d1e3a20 automatic import of R-CRAN-sommer Running: copr-distgit-client sources INFO: Calling: curl -H Pragma: -o sommer_4.3.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-sommer/sommer_4.3.4.tar.gz/md5/26bc955d439be6b0a4db6a8faf44e6bc/sommer_4.3.4.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3167k 100 3167k 0 0 2829k 0 0:00:01 0:00:01 --:--:-- 2828k INFO: Reading stdout from command: md5sum sommer_4.3.4.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer/R-CRAN-sommer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713075303.812213 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer/R-CRAN-sommer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713075303.812213 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer/R-CRAN-sommer.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1713075303.812213/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 42 kB/s | 1.5 kB 00:00 Copr repository 45 MB/s | 41 MB 00:00 fedora 270 kB/s | 24 kB 00:00 updates 66 kB/s | 23 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-5.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-5.fc39 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-17.fc39 updates 72 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.2-8.fc39 updates 117 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k coreutils-common x86_64 9.3-5.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-4.fc39 updates 345 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.191-2.fc39 updates 559 k elfutils-debuginfod-client x86_64 0.191-2.fc39 updates 38 k elfutils-default-yama-scope noarch 0.191-2.fc39 updates 13 k elfutils-libelf x86_64 0.191-2.fc39 updates 209 k elfutils-libs x86_64 0.191-2.fc39 updates 263 k fedora-gpg-keys noarch 39-1 fedora 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-1 fedora 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.2.0-3.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 14.2-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-17.fc39 updates 2.2 M glibc-common x86_64 2.38-17.fc39 updates 354 k glibc-gconv-extra x86_64 2.38-17.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.2-3.fc39 updates 765 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-1.fc39 fedora 408 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-4.fc39 updates 323 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-7.fc39 updates 115 k libgomp x86_64 13.2.1-7.fc39 updates 324 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-4.fc39 updates 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.2.1-7.fc39 updates 867 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-1.rc3.fc39 updates 93 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc39 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc39 updates 520 k p11-kit-trust x86_64 0.25.3-1.fc39 updates 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.12.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-4.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.12-1.fc39 updates 8.4 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.6.0-1.fc39 updates 848 k rpmautospec-rpm-macros noarch 0.6.3-1.fc39 updates 10 k rust-srpm-macros noarch 26.2-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.10-1.fc39 updates 687 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 179 M Downloading Packages: [SKIPPED] authselect-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch.rpm: Already downloaded [SKIPPED] cpio-2.14-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-39-1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-39-1.noarch.rpm: Already downloaded [SKIPPED] file-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.44-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-2.fc39.noarch.rpm: Already 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Already downloaded [SKIPPED] libpkgconf-1.9.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.36-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.6-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.2.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-8-2.fc39.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-14.fc39.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.6-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.1.1-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] patch-2.7.6-22.fc39.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.42-1.fc39.2.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.42-1.fc39.2.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-51.fc39.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.9.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.9.5-2.fc39.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.9.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.12-4.fc39.noarch.rpm: Already downloaded [SKIPPED] 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downloaded [SKIPPED] rpmautospec-rpm-macros-0.6.3-1.fc39.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-26.2-1.fc39.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.14.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-254.10-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.39.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.39.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.6-1.fc39.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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dwz-0.15-3.fc39.x86_64 11/152 Verifying : ed-1.19-4.fc39.x86_64 12/152 Verifying : efi-srpm-macros-5-9.fc39.noarch 13/152 Verifying : fedora-gpg-keys-39-1.noarch 14/152 Verifying : fedora-repos-39-1.noarch 15/152 Verifying : file-5.44-5.fc39.x86_64 16/152 Verifying : file-libs-5.44-5.fc39.x86_64 17/152 Verifying : filesystem-3.18-6.fc39.x86_64 18/152 Verifying : findutils-1:4.9.0-5.fc39.x86_64 19/152 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 20/152 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 21/152 Verifying : gawk-5.2.2-2.fc39.x86_64 22/152 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 23/152 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 24/152 Verifying : gmp-1:6.2.1-5.fc39.x86_64 25/152 Verifying : gnat-srpm-macros-6-3.fc39.noarch 26/152 Verifying : grep-3.11-3.fc39.x86_64 27/152 Verifying : gzip-1.12-6.fc39.x86_64 28/152 Verifying : info-7.0.3-3.fc39.x86_64 29/152 Verifying : jansson-2.13.1-7.fc39.x86_64 30/152 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 31/152 Verifying : libarchive-3.7.1-1.fc39.x86_64 32/152 Verifying : libattr-2.5.1-8.fc39.x86_64 33/152 Verifying : libbrotli-1.1.0-1.fc39.x86_64 34/152 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 35/152 Verifying : libcom_err-1.47.0-2.fc39.x86_64 36/152 Verifying : libdb-5.3.28-56.fc39.x86_64 37/152 Verifying : libevent-2.1.12-9.fc39.x86_64 38/152 Verifying : libffi-3.4.4-4.fc39.x86_64 39/152 Verifying : libnsl2-2.0.0-6.fc39.x86_64 40/152 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 41/152 Verifying : libpsl-0.21.2-4.fc39.x86_64 42/152 Verifying : libpwquality-1.4.5-6.fc39.x86_64 43/152 Verifying : libselinux-3.5-5.fc39.x86_64 44/152 Verifying : libsemanage-3.5-4.fc39.x86_64 45/152 Verifying : libsepol-3.5-2.fc39.x86_64 46/152 Verifying : libsigsegv-2.14-5.fc39.x86_64 47/152 Verifying : libtasn1-4.19.0-3.fc39.x86_64 48/152 Verifying : libunistring-1.1-5.fc39.x86_64 49/152 Verifying : libutempter-1.2.1-10.fc39.x86_64 50/152 Verifying : libverto-0.3.2-6.fc39.x86_64 51/152 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 52/152 Verifying : libxml2-2.10.4-3.fc39.x86_64 53/152 Verifying : lua-libs-5.4.6-3.fc39.x86_64 54/152 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 55/152 Verifying : mpfr-4.2.0-3.fc39.x86_64 56/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 57/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 58/152 Verifying : openldap-2.6.6-1.fc39.x86_64 59/152 Verifying : openssl-libs-1:3.1.1-4.fc39.x86_64 60/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 61/152 Verifying : patch-2.7.6-22.fc39.x86_64 62/152 Verifying : pcre2-10.42-1.fc39.2.x86_64 63/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 64/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 65/152 Verifying : pkgconf-1.9.5-2.fc39.x86_64 66/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 67/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 68/152 Verifying : popt-1.19-3.fc39.x86_64 69/152 Verifying : python-srpm-macros-3.12-4.fc39.noarch 70/152 Verifying : sed-4.8-14.fc39.x86_64 71/152 Verifying : setup-2.14.4-1.fc39.noarch 72/152 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 73/152 Verifying : tar-2:1.35-2.fc39.x86_64 74/152 Verifying : unzip-6.0-62.fc39.x86_64 75/152 Verifying : which-2.21-40.fc39.x86_64 76/152 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 77/152 Verifying : xz-5.4.4-1.fc39.x86_64 78/152 Verifying : xz-libs-5.4.4-1.fc39.x86_64 79/152 Verifying : zip-3.0-39.fc39.x86_64 80/152 Verifying : zlib-1.2.13-4.fc39.x86_64 81/152 Verifying : alternatives-1.26-1.fc39.x86_64 82/152 Verifying : ansible-srpm-macros-1-12.fc39.noarch 83/152 Verifying : audit-libs-3.1.2-8.fc39.x86_64 84/152 Verifying : bash-5.2.26-1.fc39.x86_64 85/152 Verifying : binutils-2.40-14.fc39.x86_64 86/152 Verifying : binutils-gold-2.40-14.fc39.x86_64 87/152 Verifying : coreutils-9.3-5.fc39.x86_64 88/152 Verifying : coreutils-common-9.3-5.fc39.x86_64 89/152 Verifying : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 90/152 Verifying : curl-8.2.1-4.fc39.x86_64 91/152 Verifying : debugedit-5.0-12.fc39.x86_64 92/152 Verifying : elfutils-0.191-2.fc39.x86_64 93/152 Verifying : elfutils-debuginfod-client-0.191-2.fc39.x86_64 94/152 Verifying : elfutils-default-yama-scope-0.191-2.fc39.noarch 95/152 Verifying : elfutils-libelf-0.191-2.fc39.x86_64 96/152 Verifying : elfutils-libs-0.191-2.fc39.x86_64 97/152 Verifying : fedora-release-39-36.noarch 98/152 Verifying : fedora-release-common-39-36.noarch 99/152 Verifying : fedora-release-identity-basic-39-36.noarch 100/152 Verifying : forge-srpm-macros-0.2.0-3.fc39.noarch 101/152 Verifying : gdb-minimal-14.2-1.fc39.x86_64 102/152 Verifying : glibc-2.38-17.fc39.x86_64 103/152 Verifying : glibc-common-2.38-17.fc39.x86_64 104/152 Verifying : glibc-gconv-extra-2.38-17.fc39.x86_64 105/152 Verifying : glibc-minimal-langpack-2.38-17.fc39.x86_64 106/152 Verifying : go-srpm-macros-3.5.0-1.fc39.noarch 107/152 Verifying : keyutils-libs-1.6.3-1.fc39.x86_64 108/152 Verifying : krb5-libs-1.21.2-3.fc39.x86_64 109/152 Verifying : libacl-2.3.1-9.fc39.x86_64 110/152 Verifying : libblkid-2.39.4-1.fc39.x86_64 111/152 Verifying : libcap-2.48-9.fc39.x86_64 112/152 Verifying : libcurl-8.2.1-4.fc39.x86_64 113/152 Verifying : libeconf-0.5.2-2.fc39.x86_64 114/152 Verifying : libfdisk-2.39.4-1.fc39.x86_64 115/152 Verifying : libgcc-13.2.1-7.fc39.x86_64 116/152 Verifying : libgomp-13.2.1-7.fc39.x86_64 117/152 Verifying : libidn2-2.3.7-1.fc39.x86_64 118/152 Verifying : libmount-2.39.4-1.fc39.x86_64 119/152 Verifying : libnghttp2-1.55.1-4.fc39.x86_64 120/152 Verifying : libsmartcols-2.39.4-1.fc39.x86_64 121/152 Verifying : libssh-0.10.6-2.fc39.x86_64 122/152 Verifying : libssh-config-0.10.6-2.fc39.noarch 123/152 Verifying : libstdc++-13.2.1-7.fc39.x86_64 124/152 Verifying : libtirpc-1.3.4-1.rc3.fc39.x86_64 125/152 Verifying : libuuid-2.39.4-1.fc39.x86_64 126/152 Verifying : libzstd-1.5.6-1.fc39.x86_64 127/152 Verifying : lua-srpm-macros-1-13.fc39.noarch 128/152 Verifying : ncurses-base-6.4-7.20230520.fc39.1.noarch 129/152 Verifying : ncurses-libs-6.4-7.20230520.fc39.1.x86_64 130/152 Verifying : p11-kit-0.25.3-1.fc39.x86_64 131/152 Verifying : p11-kit-trust-0.25.3-1.fc39.x86_64 132/152 Verifying : pam-1.5.3-3.fc39.x86_64 133/152 Verifying : pam-libs-1.5.3-3.fc39.x86_64 134/152 Verifying : publicsuffix-list-dafsa-20240107-1.fc39.noarch 135/152 Verifying : pyproject-srpm-macros-1.12.0-1.fc39.noarch 136/152 Verifying : qt5-srpm-macros-5.15.12-1.fc39.noarch 137/152 Verifying : qt6-srpm-macros-6.6.2-1.fc39.noarch 138/152 Verifying : readline-8.2-6.fc39.x86_64 139/152 Verifying : redhat-rpm-config-266-1.fc39.noarch 140/152 Verifying : rpm-4.19.1.1-1.fc39.x86_64 141/152 Verifying : rpm-build-4.19.1.1-1.fc39.x86_64 142/152 Verifying : rpm-build-libs-4.19.1.1-1.fc39.x86_64 143/152 Verifying : rpm-libs-4.19.1.1-1.fc39.x86_64 144/152 Verifying : rpm-sequoia-1.6.0-1.fc39.x86_64 145/152 Verifying : rpmautospec-rpm-macros-0.6.3-1.fc39.noarch 146/152 Verifying : rust-srpm-macros-26.2-1.fc39.noarch 147/152 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 148/152 Verifying : systemd-libs-254.10-1.fc39.x86_64 149/152 Verifying : util-linux-2.39.4-1.fc39.x86_64 150/152 Verifying : util-linux-core-2.39.4-1.fc39.x86_64 151/152 Verifying : zstd-1.5.6-1.fc39.x86_64 152/152 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-3.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-17.fc39.x86_64 glibc-common-2.38-17.fc39.x86_64 glibc-gconv-extra-2.38-17.fc39.x86_64 glibc-minimal-langpack-2.38-17.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-4.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-5.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-3.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-17.fc39.x86_64 glibc-common-2.38-17.fc39.x86_64 glibc-gconv-extra-2.38-17.fc39.x86_64 glibc-minimal-langpack-2.38-17.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-4.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-x86_64-1713075303.812213/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1713075303.812213/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1713075303.812213/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1713075303.812213/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-k32r1of4/R-CRAN-sommer/R-CRAN-sommer.spec) Config(child) 0 minutes 31 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1713075303.812213/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm Start: build setup for R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 34 kB/s | 1.5 kB 00:00 fedora 266 kB/s | 24 kB 00:00 updates 66 kB/s | 23 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-MASS x86_64 7.3.60.0.1-1.fc39.copr6895092 copr_base 1.2 M R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.12-1.fc39.copr6877523 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 0.12.8.2.0-1.fc39.copr7306784 copr_base 934 k R-CRAN-RcppProgress noarch 0.4.2-3.fc39.copr6279637 copr_base 35 k R-CRAN-crayon noarch 1.5.2-1.fc39.copr6279327 copr_base 182 k R-core x86_64 4.3.3-1.fc39 updates 64 M R-devel x86_64 4.3.3-1.fc39 updates 10 k Installing dependencies: R-CRAN-lattice x86_64 0.22.6-1.fc39.copr7307082 copr_base 1.4 M R-core-devel x86_64 4.3.3-1.fc39 updates 94 k R-java x86_64 4.3.3-1.fc39 updates 11 k R-java-devel x86_64 4.3.3-1.fc39 updates 10 k R-littler x86_64 0.3.19-1.fc39 updates 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.11-2.fc39 updates 521 k annobin-docs noarch 12.46-1.fc39 updates 88 k annobin-plugin-gcc x86_64 12.46-1.fc39 updates 958 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-7.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.7-11.fc39 updates 269 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.3-1.fc39 updates 7.2 k expat x86_64 2.6.2-1.fc39 updates 114 k flexiblas x86_64 3.4.2-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.2-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.2-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.2-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.2-1.fc39 updates 18 k flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc39 updates 18 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel x86_64 2.14.2-6.fc39 updates 164 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-7.fc39 updates 34 M gcc-c++ x86_64 13.2.1-7.fc39 updates 13 M gcc-gfortran x86_64 13.2.1-7.fc39 updates 12 M gcc-plugin-annobin x86_64 13.2.1-7.fc39 updates 52 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.3-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.3-1.fc39 updates 596 k glibc-devel x86_64 2.38-17.fc39 updates 86 k glibc-headers-x86 noarch 2.38-17.fc39 updates 570 k gnutls x86_64 3.8.4-1.fc39 updates 1.1 M google-noto-fonts-common noarch 20240101-1.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20240101-1.fc39 updates 593 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-17-openjdk x86_64 1:17.0.9.0.9-3.fc39 updates 407 k java-17-openjdk-devel x86_64 1:17.0.9.0.9-3.fc39 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.9.0.9-3.fc39 updates 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.8.3-200.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-1.fc39 updates 121 k libRmath-devel x86_64 4.3.3-1.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.7-1.fc39 fedora 650 k libX11-common noarch 1.8.7-1.fc39 fedora 176 k libX11-devel x86_64 1.8.7-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.7-1.fc39 fedora 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.2.1-7.fc39 updates 904 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.2.1-7.fc39 updates 200 k libquadmath-devel x86_64 13.2.1-7.fc39 updates 41 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.2.1-7.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.4-1.rc3.fc39 updates 124 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-19.fc39 updates 137 k nss x86_64 3.99.0-1.fc39 updates 702 k nss-softokn x86_64 3.99.0-1.fc39 updates 419 k nss-softokn-freebl x86_64 3.99.0-1.fc39 updates 381 k nss-sysinit x86_64 3.99.0-1.fc39 updates 18 k nss-util x86_64 3.99.0-1.fc39 updates 87 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python3 x86_64 3.12.2-2.fc39 updates 27 k python3-libs x86_64 3.12.2-2.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-7.fc39 fedora 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ======================================================================================== Install 163 Packages Total size: 276 M Total download size: 969 k Installed size: 874 M Downloading Packages: [SKIPPED] R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-crayon-1.5.2-1.fc39.copr6279327.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64.rpm: Already downloaded [SKIPPED] R-rpm-macros-1.2.1-7.fc39.noarch.rpm: Already downloaded [SKIPPED] abattis-cantarell-vf-fonts-0.301-10.fc39.noarch.rpm: Already downloaded [SKIPPED] avahi-libs-0.8-24.fc39.x86_64.rpm: Already downloaded [SKIPPED] brotli-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] brotli-devel-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-devel-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.18.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.7-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] copy-jdk-configs-4.1-3.fc39.noarch.rpm: Already downloaded [SKIPPED] dbus-libs-1.14.10-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] default-fonts-core-sans-4.0-9.fc39.noarch.rpm: Already downloaded [SKIPPED] desktop-file-utils-0.26-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] freetype-devel-2.13.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] fribidi-1.0.13-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] gettext-0.22-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gettext-envsubst-0.22-2.fc39.x86_64.rpm: Already downloaded 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 1/1 Preparing : 1/1 Installing : zlib-devel-1.2.13-4.fc39.x86_64 1/163 Installing : nspr-4.35.0-19.fc39.x86_64 2/163 Installing : libgfortran-13.2.1-7.fc39.x86_64 3/163 Installing : nss-util-3.99.0-1.fc39.x86_64 4/163 Installing : libquadmath-13.2.1-7.fc39.x86_64 5/163 Installing : xorg-x11-proto-devel-2023.2-2.fc39.noarch 6/163 Installing : libpng-2:1.6.37-15.fc39.x86_64 7/163 Installing : libmpc-1.3.1-3.fc39.x86_64 8/163 Installing : tcl-1:8.6.12-5.fc39.x86_64 9/163 Installing : libicu-73.2-2.fc39.x86_64 10/163 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 11/163 Installing : libicu-devel-73.2-2.fc39.x86_64 12/163 Installing : tcl-devel-1:8.6.12-5.fc39.x86_64 13/163 Installing : libRmath-4.3.3-1.fc39.x86_64 14/163 Installing : xz-devel-5.4.4-1.fc39.x86_64 15/163 Installing : openblas-0.3.21-6.fc39.x86_64 16/163 Installing : 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Verifying : libXmu-1.1.4-3.fc39.x86_64 50/163 Verifying : libXrender-0.9.11-3.fc39.x86_64 51/163 Verifying : libXrender-devel-0.9.11-3.fc39.x86_64 52/163 Verifying : libXt-1.2.1-5.fc39.x86_64 53/163 Verifying : libXtst-1.2.4-3.fc39.x86_64 54/163 Verifying : libb2-0.98.1-9.fc39.x86_64 55/163 Verifying : libdatrie-0.2.13-7.fc39.x86_64 56/163 Verifying : libffi-devel-3.4.4-4.fc39.x86_64 57/163 Verifying : libfontenc-1.1.6-3.fc39.x86_64 58/163 Verifying : libicu-73.2-2.fc39.x86_64 59/163 Verifying : libicu-devel-73.2-2.fc39.x86_64 60/163 Verifying : libjpeg-turbo-2.1.4-3.fc39.x86_64 61/163 Verifying : liblerc-4.0.0-4.fc39.x86_64 62/163 Verifying : libmpc-1.3.1-3.fc39.x86_64 63/163 Verifying : libpng-2:1.6.37-15.fc39.x86_64 64/163 Verifying : libpng-devel-2:1.6.37-15.fc39.x86_64 65/163 Verifying : libselinux-devel-3.5-5.fc39.x86_64 66/163 Verifying : libsepol-devel-3.5-2.fc39.x86_64 67/163 Verifying : libthai-0.1.29-6.fc39.x86_64 68/163 Verifying : libtiff-4.4.0-8.fc39.x86_64 69/163 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kernel-headers-6.8.3-200.fc39.x86_64 143/163 Verifying : libRmath-4.3.3-1.fc39.x86_64 144/163 Verifying : libRmath-devel-4.3.3-1.fc39.x86_64 145/163 Verifying : libblkid-devel-2.39.4-1.fc39.x86_64 146/163 Verifying : libgfortran-13.2.1-7.fc39.x86_64 147/163 Verifying : libmount-devel-2.39.4-1.fc39.x86_64 148/163 Verifying : libquadmath-13.2.1-7.fc39.x86_64 149/163 Verifying : libquadmath-devel-13.2.1-7.fc39.x86_64 150/163 Verifying : libstdc++-devel-13.2.1-7.fc39.x86_64 151/163 Verifying : libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 152/163 Verifying : nspr-4.35.0-19.fc39.x86_64 153/163 Verifying : nss-3.99.0-1.fc39.x86_64 154/163 Verifying : nss-softokn-3.99.0-1.fc39.x86_64 155/163 Verifying : nss-softokn-freebl-3.99.0-1.fc39.x86_64 156/163 Verifying : nss-sysinit-3.99.0-1.fc39.x86_64 157/163 Verifying : nss-util-3.99.0-1.fc39.x86_64 158/163 Verifying : python3-3.12.2-2.fc39.x86_64 159/163 Verifying : python3-libs-3.12.2-2.fc39.x86_64 160/163 Verifying : sysprof-capture-devel-45.1-1.fc39.x86_64 161/163 Verifying : tzdata-2024a-2.fc39.noarch 162/163 Verifying : tzdata-java-2024a-2.fc39.noarch 163/163 Installed products updated. Installed: R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523.x86_64 R-CRAN-RcppArmadillo-0.12.8.2.0-1.fc39.copr7306784.x86_64 R-CRAN-RcppProgress-0.4.2-3.fc39.copr6279637.noarch R-CRAN-crayon-1.5.2-1.fc39.copr6279327.noarch R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 R-core-4.3.3-1.fc39.x86_64 R-core-devel-4.3.3-1.fc39.x86_64 R-devel-4.3.3-1.fc39.x86_64 R-java-4.3.3-1.fc39.x86_64 R-java-devel-4.3.3-1.fc39.x86_64 R-littler-0.3.19-1.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.11-2.fc39.x86_64 annobin-docs-12.46-1.fc39.noarch annobin-plugin-gcc-12.46-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.27.7-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-7.fc39.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc39.noarch cups-libs-1:2.4.7-11.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.3-1.fc39.noarch expat-2.6.2-1.fc39.x86_64 flexiblas-3.4.2-1.fc39.x86_64 flexiblas-devel-3.4.2-1.fc39.x86_64 flexiblas-netlib-3.4.2-1.fc39.x86_64 flexiblas-netlib64-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp64-3.4.2-1.fc39.x86_64 fontconfig-2.14.2-6.fc39.x86_64 fontconfig-devel-2.14.2-6.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-7.fc39.x86_64 gcc-c++-13.2.1-7.fc39.x86_64 gcc-gfortran-13.2.1-7.fc39.x86_64 gcc-plugin-annobin-13.2.1-7.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.3-1.fc39.x86_64 glib2-devel-2.78.3-1.fc39.x86_64 glibc-devel-2.38-17.fc39.x86_64 glibc-headers-x86-2.38-17.fc39.noarch gnutls-3.8.4-1.fc39.x86_64 google-noto-fonts-common-20240101-1.fc39.noarch google-noto-sans-vf-fonts-20240101-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-17-openjdk-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-devel-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.8.3-200.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.3-1.fc39.x86_64 libRmath-devel-4.3.3-1.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.7-1.fc39.x86_64 libX11-common-1.8.7-1.fc39.noarch libX11-devel-1.8.7-1.fc39.x86_64 libX11-xcb-1.8.7-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.4-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.2.1-7.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.4-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.2.1-7.fc39.x86_64 libquadmath-devel-13.2.1-7.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.2.1-7.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc39.x86_64 libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.19-4.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-19.fc39.x86_64 nss-3.99.0-1.fc39.x86_64 nss-softokn-3.99.0-1.fc39.x86_64 nss-softokn-freebl-3.99.0-1.fc39.x86_64 nss-sysinit-3.99.0-1.fc39.x86_64 nss-util-3.99.0-1.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.2-2.fc39.x86_64 python3-libs-3.12.2-2.fc39.x86_64 python3-setuptools-67.7.2-7.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm Start: rpmbuild R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xqLcM3 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf sommer + /usr/bin/mkdir -p sommer + cd sommer + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/sommer_4.3.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/sommer-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/sommer-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d sommer/src ']' + find sommer/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d sommer/src ']' + find sommer/src/Makevars sommer/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.FuqEAy + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd sommer + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.gMkWdy + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd sommer + mkdir -p /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64/usr/local/lib/R/library sommer * installing *source* package ‘sommer’ ... files ‘R/FUN_algorithms.R’, ‘R/FUN_emmeans.R’, ‘R/FUN_markers.R’, ‘man/AI.Rd’, ‘man/EM.Rd’, ‘man/GWAS.Rd’, ‘man/LD.decay.Rd’, ‘man/add.diallel.vars.Rd’, ‘man/adiag1.Rd’, ‘man/atc.Rd’, ‘man/atcg1234.Rd’, ‘man/atcg1234BackTransform.Rd’, ‘man/atr.Rd’, ‘man/bivariateRun.Rd’, ‘man/corImputation.Rd’, ‘man/covc.Rd’, ‘man/csc.Rd’, ‘man/csr.Rd’, ‘man/dfToMatrix.Rd’, ‘man/dsc.Rd’, ‘man/dsr.Rd’, ‘man/fcm.Rd’, ‘man/fixm.Rd’, ‘man/gvsr.Rd’, ‘man/impute.Rd’, ‘man/isc.Rd’, ‘man/leg.Rd’, ‘man/list2usmat.Rd’, ‘man/logspace.Rd’, ‘man/manhattan.Rd’, ‘man/map.plot.Rd’, ‘man/mmer.Rd’, ‘man/neMarker.Rd’, ‘man/overlay.Rd’, ‘man/propMissing.Rd’, ‘man/randef.Rd’, ‘man/redmm.Rd’, ‘man/rrc.Rd’, ‘man/sommer-package.Rd’, ‘man/stackTrait.Rd’, ‘man/transformConstraints.Rd’, ‘man/unsm.Rd’, ‘man/usc.Rd’, ‘man/usr.Rd’, ‘man/vs.Rd’, ‘man/vsr.Rd’ have the wrong MD5 checksums ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c MNR.cpp -o MNR.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from MNR.cpp:5: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: ‘#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed’ 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: ‘#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead’ 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: ‘#pragma message: INFO: see the documentation for details’ 329 | #pragma message ("INFO: see the documentation for details") | ^ MNR.cpp: In function ‘arma::mat dmat(const arma::mat&, const bool&, double)’: MNR.cpp:306:7: warning: unused variable ‘p’ [-Wunused-variable] 306 | int p = X.n_cols; | ^ MNR.cpp: In function ‘arma::rowvec scorecalc(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, int, double)’: MNR.cpp:453:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 453 | for (int i = 0; i < b.n_rows; ++i) { | ~~^~~~~~~~~~ MNR.cpp: In function ‘Rcpp::List MNR(const arma::mat&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const arma::mat&, const bool&, int, double, double, const bool&, const bool&, const bool&, const bool&, const arma::vec&, const arma::vec&)’: MNR.cpp:635:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 635 | for(int h=0; h < provX.n_cols ; h++){ // for each random effect unlist | ~~^~~~~~~~~~~~~~ MNR.cpp: In function ‘Rcpp::List ai_mme_sp(const arma::sp_mat&, const Rcpp::List&, const arma::vec&, const Rcpp::List&, const arma::sp_mat&, const Rcpp::List&, const Rcpp::List&, const arma::sp_mat&, const bool&, int, double, double, double, const Rcpp::List&, const Rcpp::List&, const arma::mat&, const arma::vec&, const arma::vec&, const arma::vec&, const bool&)’: MNR.cpp:1299:12: warning: unused variable ‘ok’ [-Wunused-variable] 1299 | bool ok = log_det(val, sign, arma::mat(Ai[i])); // calculate the logDet of the covariance matrix | ^~ MNR.cpp:1522:14: warning: unused variable ‘ok’ [-Wunused-variable] 1522 | bool ok = log_det(val, sign, theta(i)); // form 2 | ^~ MNR.cpp:1570:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1570 | for(int iRow = 0; iRow < partitionsP.n_rows; ++iRow){ // for each partition row | ~~~~~^~~~~~~~~~~~~~~~~~~~ MNR.cpp:1588:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1588 | for(int iRow = 0; iRow < lambdaProv.n_rows; ++iRow){ | ~~~~~^~~~~~~~~~~~~~~~~~~ MNR.cpp:1589:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1589 | for(int iCol = 0; iCol < lambdaProv.n_cols; ++iCol){ | ~~~~~^~~~~~~~~~~~~~~~~~~ MNR.cpp:1614:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1614 | for(int iS = 0; iS < S.size(); ++iS){ | ~~~^~~~~~~~~~ MNR.cpp:1695:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1695 | for(int iRow = 0; iRow < lambdaProv.n_rows; ++iRow){ | ~~~~~^~~~~~~~~~~~~~~~~~~ MNR.cpp:1696:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1696 | for(int iCol = 0; iCol < lambdaProv.n_cols; ++iCol){ | ~~~~~^~~~~~~~~~~~~~~~~~~ MNR.cpp:1722:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1722 | for(int iS = 0; iS < S.size(); ++iS){ // Rij <- S[[iS]]%*%Ri | ~~~^~~~~~~~~~ MNR.cpp:1780:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 1780 | for(int i = 0; i < thetaCUnlisted.size() ; ++i){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ MNR.cpp:1787:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1787 | for(int j = 0; j < toBoundary.n_cols ; ++j){ | ~~^~~~~~~~~~~~~~~~~~~ MNR.cpp:1528:10: warning: unused variable ‘ok’ [-Wunused-variable] 1528 | bool ok = log_det(val, sign, theta(nRRe-1)); // form 2 | ^~ MNR.cpp: In function ‘varCols(arma::Mat const&)’: MNR.cpp:148:19: warning: ‘n’ may be used uninitialized [-Wmaybe-uninitialized] 148 | out(j) = M2/(n-1); | ~~^~~ MNR.cpp:138:9: note: ‘n’ was declared here 138 | int n; | ^ MNR.cpp: In function ‘ai_mme_sp(arma::SpMat const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Col const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::SpMat const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::SpMat const&, bool const&, int, double, double, double, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Mat const&, arma::Col const&, arma::Col const&, arma::Col const&, bool const&)’: MNR.cpp:1286:37: warning: ‘nRe’ may be used uninitialized [-Wmaybe-uninitialized] 1286 | arma::field Ai(nReAl); // allocate size of Ai field | ^ MNR.cpp:1245:7: note: ‘nRe’ was declared here 1245 | int nRe; | ^~~ MNR.cpp: In function ‘MNR(arma::Mat const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, Rcpp::Vector<19, Rcpp::PreserveStorage> const&, arma::Mat const&, bool const&, int, double, double, bool const&, bool const&, bool const&, bool const&, arma::Col const&, arma::Col const&)’: MNR.cpp:1108:36: warning: ‘cycle2’ may be used uninitialized [-Wmaybe-uninitialized] 1108 | arma::mat monitor2 = monitor.cols(0, cycle2); | ~~~~~~~~~~~~^~~~~~~~~~~ MNR.cpp:719:14: note: ‘cycle2’ was declared here 719 | int cycle, cycle2, ikk; | ^~~~~~ MNR.cpp:1099:20: warning: ‘llik’ may be used uninitialized [-Wmaybe-uninitialized] 1099 | double AIC = (-2 * llik) + (2 * Xm.n_cols); | ~~~~^~~~~~~ MNR.cpp:720:16: note: ‘llik’ was declared here 720 | double ldet, llik, llik0, delta_llik, checkP, seconds; // to store likelihoods and determinants | ^~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o sommer.so MNR.o RcppExports.o -fopenmp -lflexiblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64/usr/local/lib/R/library/00LOCK-sommer/00new/sommer/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘sommer’ finding HTML links ... done A.mat html AI html AR1mat html ARMAmat html CSmat html D.mat html DT_augment html DT_btdata html DT_cornhybrids html DT_cpdata html DT_example html DT_expdesigns html DT_fulldiallel html DT_gryphon html DT_h2 html DT_halfdiallel html DT_ige html DT_legendre html DT_mohring html DT_polyploid html DT_rice html DT_sleepstudy html DT_technow html DT_wheat html DT_yatesoats html E.mat html EM html EMMA html GWAS html H.mat html LD.decay html add.diallel.vars html adiag1 html anova_mmec html anova_mmer html atc html atcg1234 html atcg1234BackTransform html atr html bathy.colors html bbasis html bivariateRun html build.HMM html coef_mmec html coef_mmer html corImputation html covc html csc html csr html dfToMatrix html dsc html dsr html fcm html fitted_mmec html fitted_mmer html fixm html gvsr html impute html isc html jet.colors html leg html list2usmat html logspace html manhattan html map.plot html mmec html mmer html neMarker html overlay html plot.monitor html plot_mmec html plot_mmer html predict_mmec html predict_mmer html propMissing html r2 html randef html redmm html residuals_mmec html residuals_mmer html rrc html simGECorMat html sommer-package html spl2Da html spl2Db html spl2Dc html spl2Dmats html stackTrait html summary_mmec html summary_mmer html tpsmmbwrapper html transformConstraints html transp html unsm html usc html usr html vpredict html vs html vsc html vsr html wald html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sommer) + test -d sommer/src + cd sommer/src + rm -f MNR.o RcppExports.o sommer.so + rm -f /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.3.4-1.fc39.copr7307487 --unique-debug-suffix -4.3.4-1.fc39.copr7307487.x86_64 --unique-debug-src-base R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/sommer find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 201 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/local/lib/R/library/sommer/doc/v1.sommer.quick.start.Rmd is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/sommer/doc/v2.sommer.changes.and.faqs.Rmd is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/sommer/doc/v4.sommer.gxe.Rmd is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/sommer/doc/v5.sommer.vs.lme4.Rmd is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/sommer/CITATION is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64/sommer/src/MNR.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64/sommer/src/RcppExports.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 Provides: R-CRAN-sommer = 4.3.4-1.fc39.copr7307487 R-CRAN-sommer(x86-64) = 4.3.4-1.fc39.copr7307487 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-sommer-debugsource-4.3.4-1.fc39.copr7307487.x86_64 Provides: R-CRAN-sommer-debugsource = 4.3.4-1.fc39.copr7307487 R-CRAN-sommer-debugsource(x86-64) = 4.3.4-1.fc39.copr7307487 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-sommer-debuginfo-4.3.4-1.fc39.copr7307487.x86_64 Provides: R-CRAN-sommer-debuginfo = 4.3.4-1.fc39.copr7307487 R-CRAN-sommer-debuginfo(x86-64) = 4.3.4-1.fc39.copr7307487 debuginfo(build-id) = 32c32d9be1be7d3c6c3f6a6577330dc507545d11 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-sommer-debugsource(x86-64) = 4.3.4-1.fc39.copr7307487 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-sommer-debugsource-4.3.4-1.fc39.copr7307487.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-sommer-debuginfo-4.3.4-1.fc39.copr7307487.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.7tzlTJ + umask 022 + cd /builddir/build/BUILD + cd sommer + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.mSKdV5 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/sommer-SPECPARTS + rm -rf sommer sommer.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm Finish: build phase for R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1713075303.812213/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1713075303.812213/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1713075303.812213/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-sommer-4.3.4-1.fc39.copr7307487.src.rpm) Config(child) 1 minutes 56 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-sommer-debugsource", "epoch": null, "version": "4.3.4", "release": "1.fc39.copr7307487", "arch": "x86_64" }, { "name": "R-CRAN-sommer", "epoch": null, "version": "4.3.4", "release": "1.fc39.copr7307487", "arch": "x86_64" }, { "name": "R-CRAN-sommer-debuginfo", "epoch": null, "version": "4.3.4", "release": "1.fc39.copr7307487", "arch": "x86_64" }, { "name": "R-CRAN-sommer", "epoch": null, "version": "4.3.4", "release": "1.fc39.copr7307487", "arch": "src" } ] } RPMResults finished