%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  BiodiversityR
%global packver   2.16-1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.16.1
Release:          1%{?dist}%{?buildtag}
Summary:          Package for Community Ecology and Suitability Analysis

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.2.2
Requires:         R-core >= 3.2.2
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 >= 3.3.3
BuildRequires:    R-CRAN-Rcmdr >= 2.9.1
BuildRequires:    R-CRAN-vegan >= 2.6.4
BuildRequires:    R-tcltk 
Requires:         R-CRAN-ggplot2 >= 3.3.3
Requires:         R-CRAN-Rcmdr >= 2.9.1
Requires:         R-CRAN-vegan >= 2.6.4
Requires:         R-tcltk 

%description
Graphical User Interface (via the R-Commander) and utility functions
(often based on the vegan package) for statistical analysis of
biodiversity and ecological communities, including species accumulation
curves, diversity indices, Renyi profiles, GLMs for analysis of species
abundance and presence-absence, distance matrices, Mantel tests, and
cluster, constrained and unconstrained ordination analysis. A book on
biodiversity and community ecology analysis is available for free download
from the website. In 2012, methods for (ensemble) suitability modelling
and mapping were expanded in the package.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}