Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c11b' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7307957-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.72 PID: 10376 Logging PID: 10377 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 7307957, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '0a449fe946b2d2aa1fdcbea9d4b9814b12b1052a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-pagoda2', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-pagoda2', 'package_version': '1.0.12-1.copr7307957', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '7307957-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-pagoda2 /var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-pagoda2', '/var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2'... Running: git checkout 0a449fe946b2d2aa1fdcbea9d4b9814b12b1052a -- cmd: ['git', 'checkout', '0a449fe946b2d2aa1fdcbea9d4b9814b12b1052a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2 rc: 0 stdout: stderr: Note: switching to '0a449fe946b2d2aa1fdcbea9d4b9814b12b1052a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 0a449fe automatic import of R-CRAN-pagoda2 Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading pagoda2_1.0.12.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o pagoda2_1.0.12.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-pagoda2/pagoda2_1.0.12.tar.gz/md5/9ecefd8a29f040f5df0b56351948522a/pagoda2_1.0.12.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 531k 100 531k 0 0 5075k 0 --:--:-- --:--:-- --:--:-- 5112k INFO: Reading stdout from command: md5sum pagoda2_1.0.12.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2/R-CRAN-pagoda2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713086410.173302 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2/R-CRAN-pagoda2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713086410.173302 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2/R-CRAN-pagoda2.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1713086410.173302/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 32 MB/s | 41 MB 00:01 fedora 22 MB/s | 89 MB 00:04 updates 12 MB/s | 35 MB 00:02 Last metadata expiration check: 0:00:09 ago on Sun Apr 14 09:20:48 2024. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-5.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-5.fc39 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-17.fc39 updates 72 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.2-8.fc39 updates 117 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k coreutils-common x86_64 9.3-5.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-4.fc39 updates 345 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.191-2.fc39 updates 559 k elfutils-debuginfod-client x86_64 0.191-2.fc39 updates 38 k elfutils-default-yama-scope noarch 0.191-2.fc39 updates 13 k elfutils-libelf x86_64 0.191-2.fc39 updates 209 k elfutils-libs x86_64 0.191-2.fc39 updates 263 k fedora-gpg-keys noarch 39-1 fedora 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-1 fedora 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.2.0-3.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 14.2-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-17.fc39 updates 2.2 M glibc-common x86_64 2.38-17.fc39 updates 354 k glibc-gconv-extra x86_64 2.38-17.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.2-3.fc39 updates 765 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-1.fc39 fedora 408 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-4.fc39 updates 323 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-7.fc39 updates 115 k libgomp x86_64 13.2.1-7.fc39 updates 324 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-4.fc39 updates 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.2.1-7.fc39 updates 867 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-1.rc3.fc39 updates 93 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc39 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc39 updates 520 k p11-kit-trust x86_64 0.25.3-1.fc39 updates 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.12.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-4.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.12-1.fc39 updates 8.4 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.6.0-1.fc39 updates 848 k rpmautospec-rpm-macros noarch 0.6.3-1.fc39 updates 10 k rust-srpm-macros noarch 26.2-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.10-1.fc39 updates 687 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total download size: 52 M Installed size: 179 M Downloading Packages: (1/152): basesystem-11-18.fc39.noarch.rpm 83 kB/s | 7.2 kB 00:00 (2/152): authselect-1.4.3-1.fc39.x86_64.rpm 842 kB/s | 149 kB 00:00 (3/152): bzip2-1.0.8-16.fc39.x86_64.rpm 510 kB/s | 52 kB 00:00 (4/152): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 1.4 MB/s | 41 kB 00:00 (5/152): authselect-libs-1.4.3-1.fc39.x86_64.rp 1.1 MB/s | 249 kB 00:00 (6/152): cracklib-2.9.11-2.fc39.x86_64.rpm 2.9 MB/s | 94 kB 00:00 (7/152): cpio-2.14-4.fc39.x86_64.rpm 3.8 MB/s | 279 kB 00:00 (8/152): diffutils-3.10-3.fc39.x86_64.rpm 7.0 MB/s | 398 kB 00:00 (9/152): ca-certificates-2023.2.60_v7.0.306-2.f 5.4 MB/s | 837 kB 00:00 (10/152): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 8.4 MB/s | 793 kB 00:00 (11/152): dwz-0.15-3.fc39.x86_64.rpm 4.2 MB/s | 134 kB 00:00 (12/152): ed-1.19-4.fc39.x86_64.rpm 2.6 MB/s | 79 kB 00:00 (13/152): efi-srpm-macros-5-9.fc39.noarch.rpm 794 kB/s | 22 kB 00:00 (14/152): fedora-gpg-keys-39-1.noarch.rpm 4.9 MB/s | 130 kB 00:00 (15/152): fedora-repos-39-1.noarch.rpm 407 kB/s | 9.3 kB 00:00 (16/152): file-5.44-5.fc39.x86_64.rpm 2.0 MB/s | 49 kB 00:00 (17/152): findutils-4.9.0-5.fc39.x86_64.rpm 12 MB/s | 492 kB 00:00 (18/152): file-libs-5.44-5.fc39.x86_64.rpm 15 MB/s | 729 kB 00:00 (19/152): filesystem-3.18-6.fc39.x86_64.rpm 20 MB/s | 1.1 MB 00:00 (20/152): fonts-srpm-macros-2.0.5-12.fc39.noarc 991 kB/s | 26 kB 00:00 (21/152): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 296 kB/s | 7.4 kB 00:00 (22/152): gawk-5.2.2-2.fc39.x86_64.rpm 27 MB/s | 1.1 MB 00:00 (23/152): gdbm-libs-1.23-4.fc39.x86_64.rpm 2.0 MB/s | 56 kB 00:00 (24/152): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 312 kB/s | 7.8 kB 00:00 (25/152): gmp-6.2.1-5.fc39.x86_64.rpm 11 MB/s | 313 kB 00:00 (26/152): gnat-srpm-macros-6-3.fc39.noarch.rpm 353 kB/s | 8.8 kB 00:00 (27/152): grep-3.11-3.fc39.x86_64.rpm 9.9 MB/s | 298 kB 00:00 (28/152): info-7.0.3-3.fc39.x86_64.rpm 6.8 MB/s | 182 kB 00:00 (29/152): gzip-1.12-6.fc39.x86_64.rpm 5.6 MB/s | 166 kB 00:00 (30/152): jansson-2.13.1-7.fc39.x86_64.rpm 1.7 MB/s | 44 kB 00:00 (31/152): kernel-srpm-macros-1.0-20.fc39.noarch 457 kB/s | 10 kB 00:00 (32/152): libattr-2.5.1-8.fc39.x86_64.rpm 751 kB/s | 18 kB 00:00 (33/152): libarchive-3.7.1-1.fc39.x86_64.rpm 12 MB/s | 408 kB 00:00 (34/152): libbrotli-1.1.0-1.fc39.x86_64.rpm 12 MB/s | 336 kB 00:00 (35/152): libcap-ng-0.8.3-8.fc39.x86_64.rpm 1.3 MB/s | 32 kB 00:00 (36/152): libcom_err-1.47.0-2.fc39.x86_64.rpm 1.1 MB/s | 26 kB 00:00 (37/152): libevent-2.1.12-9.fc39.x86_64.rpm 7.0 MB/s | 258 kB 00:00 (38/152): libdb-5.3.28-56.fc39.x86_64.rpm 19 MB/s | 760 kB 00:00 (39/152): libffi-3.4.4-4.fc39.x86_64.rpm 1.2 MB/s | 40 kB 00:00 (40/152): libnsl2-2.0.0-6.fc39.x86_64.rpm 1.2 MB/s | 30 kB 00:00 (41/152): libpkgconf-1.9.5-2.fc39.x86_64.rpm 1.6 MB/s | 38 kB 00:00 (42/152): libpsl-0.21.2-4.fc39.x86_64.rpm 2.6 MB/s | 63 kB 00:00 (43/152): libpwquality-1.4.5-6.fc39.x86_64.rpm 4.5 MB/s | 120 kB 00:00 (44/152): libsemanage-3.5-4.fc39.x86_64.rpm 4.6 MB/s | 120 kB 00:00 (45/152): libselinux-3.5-5.fc39.x86_64.rpm 3.2 MB/s | 87 kB 00:00 (46/152): libsigsegv-2.14-5.fc39.x86_64.rpm 1.1 MB/s | 27 kB 00:00 (47/152): libtasn1-4.19.0-3.fc39.x86_64.rpm 2.9 MB/s | 74 kB 00:00 (48/152): libsepol-3.5-2.fc39.x86_64.rpm 9.6 MB/s | 324 kB 00:00 (49/152): libutempter-1.2.1-10.fc39.x86_64.rpm 1.1 MB/s | 26 kB 00:00 (50/152): libverto-0.3.2-6.fc39.x86_64.rpm 818 kB/s | 20 kB 00:00 (51/152): libunistring-1.1-5.fc39.x86_64.rpm 13 MB/s | 543 kB 00:00 (52/152): libxcrypt-4.4.36-2.fc39.x86_64.rpm 4.3 MB/s | 119 kB 00:00 (53/152): lua-libs-5.4.6-3.fc39.x86_64.rpm 471 kB/s | 133 kB 00:00 (54/152): libxml2-2.10.4-3.fc39.x86_64.rpm 1.6 MB/s | 701 kB 00:00 (55/152): ocaml-srpm-macros-8-2.fc39.noarch.rpm 394 kB/s | 14 kB 00:00 (56/152): openblas-srpm-macros-2-14.fc39.noarch 71 kB/s | 7.5 kB 00:00 (57/152): openldap-2.6.6-1.fc39.x86_64.rpm 3.6 MB/s | 255 kB 00:00 (58/152): lz4-libs-1.9.4-4.fc39.x86_64.rpm 97 kB/s | 67 kB 00:00 (59/152): package-notes-srpm-macros-0.5-9.fc39. 143 kB/s | 11 kB 00:00 (60/152): mpfr-4.2.0-3.fc39.x86_64.rpm 668 kB/s | 344 kB 00:00 (61/152): openssl-libs-3.1.1-4.fc39.x86_64.rpm 7.7 MB/s | 2.2 MB 00:00 (62/152): pcre2-syntax-10.42-1.fc39.2.noarch.rp 3.8 MB/s | 143 kB 00:00 (63/152): perl-srpm-macros-1-51.fc39.noarch.rpm 352 kB/s | 8.0 kB 00:00 (64/152): pkgconf-1.9.5-2.fc39.x86_64.rpm 1.6 MB/s | 42 kB 00:00 (65/152): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 594 kB/s | 14 kB 00:00 (66/152): pkgconf-pkg-config-1.9.5-2.fc39.x86_6 421 kB/s | 9.6 kB 00:00 (67/152): pcre2-10.42-1.fc39.2.x86_64.rpm 841 kB/s | 233 kB 00:00 (68/152): popt-1.19-3.fc39.x86_64.rpm 1.7 MB/s | 66 kB 00:00 (69/152): python-srpm-macros-3.12-4.fc39.noarch 277 kB/s | 25 kB 00:00 (70/152): sed-4.8-14.fc39.x86_64.rpm 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(143/152): redhat-rpm-config-266-1.fc39.noarch. 313 kB/s | 78 kB 00:00 (144/152): rpm-libs-4.19.1.1-1.fc39.x86_64.rpm 3.2 MB/s | 312 kB 00:00 (145/152): rust-srpm-macros-26.2-1.fc39.noarch. 160 kB/s | 13 kB 00:00 (146/152): rpmautospec-rpm-macros-0.6.3-1.fc39. 107 kB/s | 10 kB 00:00 (147/152): rpm-sequoia-1.6.0-1.fc39.x86_64.rpm 5.7 MB/s | 848 kB 00:00 (148/152): shadow-utils-4.14.0-2.fc39.x86_64.rp 7.2 MB/s | 1.3 MB 00:00 (149/152): util-linux-2.39.4-1.fc39.x86_64.rpm 7.5 MB/s | 1.2 MB 00:00 (150/152): util-linux-core-2.39.4-1.fc39.x86_64 4.5 MB/s | 507 kB 00:00 (151/152): zstd-1.5.6-1.fc39.x86_64.rpm 4.3 MB/s | 479 kB 00:00 (152/152): systemd-libs-254.10-1.fc39.x86_64.rp 844 kB/s | 687 kB 00:00 -------------------------------------------------------------------------------- Total 5.8 MB/s | 52 MB 00:08 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-7.fc39.x86_64 1/152 Running scriptlet: libgcc-13.2.1-7.fc39.x86_64 1/152 Installing : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/152 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/152 Installing : fedora-release-identity-basic-39-36.noarch 3/152 Installing : fedora-gpg-keys-39-1.noarch 4/152 Installing : fedora-repos-39-1.noarch 5/152 Installing : fedora-release-common-39-36.noarch 6/152 Installing : fedora-release-39-36.noarch 7/152 Installing : setup-2.14.4-1.fc39.noarch 8/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 8/152 Installing : filesystem-3.18-6.fc39.x86_64 9/152 Installing : basesystem-11-18.fc39.noarch 10/152 Installing : rust-srpm-macros-26.2-1.fc39.noarch 11/152 Installing : qt6-srpm-macros-6.6.2-1.fc39.noarch 12/152 Installing : qt5-srpm-macros-5.15.12-1.fc39.noarch 13/152 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ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 101/152 Installing : krb5-libs-1.21.2-3.fc39.x86_64 102/152 Installing : libtirpc-1.3.4-1.rc3.fc39.x86_64 103/152 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 104/152 Installing : authselect-libs-1.4.3-1.fc39.x86_64 104/152 Installing : gzip-1.12-6.fc39.x86_64 105/152 Installing : libarchive-3.7.1-1.fc39.x86_64 106/152 Installing : cracklib-2.9.11-2.fc39.x86_64 107/152 Installing : libpwquality-1.4.5-6.fc39.x86_64 108/152 Installing : authselect-1.4.3-1.fc39.x86_64 109/152 Installing : libnsl2-2.0.0-6.fc39.x86_64 110/152 Installing : pam-1.5.3-3.fc39.x86_64 111/152 Installing : libssh-0.10.6-2.fc39.x86_64 112/152 Installing : libevent-2.1.12-9.fc39.x86_64 113/152 Installing : openldap-2.6.6-1.fc39.x86_64 114/152 Installing : libcurl-8.2.1-4.fc39.x86_64 115/152 Installing : elfutils-libs-0.191-2.fc39.x86_64 116/152 Installing : elfutils-debuginfod-client-0.191-2.fc39.x86_64 117/152 Installing : binutils-gold-2.40-14.fc39.x86_64 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libutempter-1.2.1-10.fc39.x86_64 133/152 Installing : patch-2.7.6-22.fc39.x86_64 134/152 Installing : tar-2:1.35-2.fc39.x86_64 135/152 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 136/152 Installing : openblas-srpm-macros-2-14.fc39.noarch 137/152 Installing : ocaml-srpm-macros-8-2.fc39.noarch 138/152 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 139/152 Installing : gnat-srpm-macros-6-3.fc39.noarch 140/152 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 141/152 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : python-srpm-macros-3.12-4.fc39.noarch 144/152 Installing : forge-srpm-macros-0.2.0-3.fc39.noarch 145/152 Installing : go-srpm-macros-3.5.0-1.fc39.noarch 146/152 Installing : redhat-rpm-config-266-1.fc39.noarch 147/152 Installing : rpm-build-4.19.1.1-1.fc39.x86_64 148/152 Installing : pyproject-srpm-macros-1.12.0-1.fc39.noarch 149/152 Installing : util-linux-2.39.4-1.fc39.x86_64 150/152 Running scriptlet: util-linux-2.39.4-1.fc39.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.0.3-3.fc39.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 152/152 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 152/152 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 152/152 Running scriptlet: info-7.0.3-3.fc39.x86_64 152/152 Verifying : authselect-1.4.3-1.fc39.x86_64 1/152 Verifying : authselect-libs-1.4.3-1.fc39.x86_64 2/152 Verifying : basesystem-11-18.fc39.noarch 3/152 Verifying : bzip2-1.0.8-16.fc39.x86_64 4/152 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 5/152 Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 6/152 Verifying : cpio-2.14-4.fc39.x86_64 7/152 Verifying : cracklib-2.9.11-2.fc39.x86_64 8/152 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 9/152 Verifying : diffutils-3.10-3.fc39.x86_64 10/152 Verifying : dwz-0.15-3.fc39.x86_64 11/152 Verifying : ed-1.19-4.fc39.x86_64 12/152 Verifying : efi-srpm-macros-5-9.fc39.noarch 13/152 Verifying : fedora-gpg-keys-39-1.noarch 14/152 Verifying : fedora-repos-39-1.noarch 15/152 Verifying : file-5.44-5.fc39.x86_64 16/152 Verifying : file-libs-5.44-5.fc39.x86_64 17/152 Verifying : filesystem-3.18-6.fc39.x86_64 18/152 Verifying : findutils-1:4.9.0-5.fc39.x86_64 19/152 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 20/152 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 21/152 Verifying : gawk-5.2.2-2.fc39.x86_64 22/152 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 23/152 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 24/152 Verifying : gmp-1:6.2.1-5.fc39.x86_64 25/152 Verifying : gnat-srpm-macros-6-3.fc39.noarch 26/152 Verifying : grep-3.11-3.fc39.x86_64 27/152 Verifying : gzip-1.12-6.fc39.x86_64 28/152 Verifying : info-7.0.3-3.fc39.x86_64 29/152 Verifying : jansson-2.13.1-7.fc39.x86_64 30/152 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 31/152 Verifying : libarchive-3.7.1-1.fc39.x86_64 32/152 Verifying : libattr-2.5.1-8.fc39.x86_64 33/152 Verifying : libbrotli-1.1.0-1.fc39.x86_64 34/152 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 35/152 Verifying : libcom_err-1.47.0-2.fc39.x86_64 36/152 Verifying : libdb-5.3.28-56.fc39.x86_64 37/152 Verifying : libevent-2.1.12-9.fc39.x86_64 38/152 Verifying : libffi-3.4.4-4.fc39.x86_64 39/152 Verifying : libnsl2-2.0.0-6.fc39.x86_64 40/152 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 41/152 Verifying : libpsl-0.21.2-4.fc39.x86_64 42/152 Verifying : libpwquality-1.4.5-6.fc39.x86_64 43/152 Verifying : libselinux-3.5-5.fc39.x86_64 44/152 Verifying : libsemanage-3.5-4.fc39.x86_64 45/152 Verifying : libsepol-3.5-2.fc39.x86_64 46/152 Verifying : libsigsegv-2.14-5.fc39.x86_64 47/152 Verifying : libtasn1-4.19.0-3.fc39.x86_64 48/152 Verifying : libunistring-1.1-5.fc39.x86_64 49/152 Verifying : libutempter-1.2.1-10.fc39.x86_64 50/152 Verifying : libverto-0.3.2-6.fc39.x86_64 51/152 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 52/152 Verifying : libxml2-2.10.4-3.fc39.x86_64 53/152 Verifying : lua-libs-5.4.6-3.fc39.x86_64 54/152 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 55/152 Verifying : mpfr-4.2.0-3.fc39.x86_64 56/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 57/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 58/152 Verifying : openldap-2.6.6-1.fc39.x86_64 59/152 Verifying : openssl-libs-1:3.1.1-4.fc39.x86_64 60/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 61/152 Verifying : patch-2.7.6-22.fc39.x86_64 62/152 Verifying : pcre2-10.42-1.fc39.2.x86_64 63/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 64/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 65/152 Verifying : pkgconf-1.9.5-2.fc39.x86_64 66/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 67/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 68/152 Verifying : popt-1.19-3.fc39.x86_64 69/152 Verifying : python-srpm-macros-3.12-4.fc39.noarch 70/152 Verifying : sed-4.8-14.fc39.x86_64 71/152 Verifying : setup-2.14.4-1.fc39.noarch 72/152 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 73/152 Verifying : tar-2:1.35-2.fc39.x86_64 74/152 Verifying : unzip-6.0-62.fc39.x86_64 75/152 Verifying : which-2.21-40.fc39.x86_64 76/152 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 77/152 Verifying : xz-5.4.4-1.fc39.x86_64 78/152 Verifying : xz-libs-5.4.4-1.fc39.x86_64 79/152 Verifying : zip-3.0-39.fc39.x86_64 80/152 Verifying : zlib-1.2.13-4.fc39.x86_64 81/152 Verifying : alternatives-1.26-1.fc39.x86_64 82/152 Verifying : ansible-srpm-macros-1-12.fc39.noarch 83/152 Verifying : audit-libs-3.1.2-8.fc39.x86_64 84/152 Verifying : bash-5.2.26-1.fc39.x86_64 85/152 Verifying : binutils-2.40-14.fc39.x86_64 86/152 Verifying : binutils-gold-2.40-14.fc39.x86_64 87/152 Verifying : coreutils-9.3-5.fc39.x86_64 88/152 Verifying : coreutils-common-9.3-5.fc39.x86_64 89/152 Verifying : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 90/152 Verifying : curl-8.2.1-4.fc39.x86_64 91/152 Verifying : debugedit-5.0-12.fc39.x86_64 92/152 Verifying : elfutils-0.191-2.fc39.x86_64 93/152 Verifying : elfutils-debuginfod-client-0.191-2.fc39.x86_64 94/152 Verifying : elfutils-default-yama-scope-0.191-2.fc39.noarch 95/152 Verifying : elfutils-libelf-0.191-2.fc39.x86_64 96/152 Verifying : elfutils-libs-0.191-2.fc39.x86_64 97/152 Verifying : fedora-release-39-36.noarch 98/152 Verifying : fedora-release-common-39-36.noarch 99/152 Verifying : fedora-release-identity-basic-39-36.noarch 100/152 Verifying : forge-srpm-macros-0.2.0-3.fc39.noarch 101/152 Verifying : gdb-minimal-14.2-1.fc39.x86_64 102/152 Verifying : glibc-2.38-17.fc39.x86_64 103/152 Verifying : glibc-common-2.38-17.fc39.x86_64 104/152 Verifying : glibc-gconv-extra-2.38-17.fc39.x86_64 105/152 Verifying : glibc-minimal-langpack-2.38-17.fc39.x86_64 106/152 Verifying : go-srpm-macros-3.5.0-1.fc39.noarch 107/152 Verifying : keyutils-libs-1.6.3-1.fc39.x86_64 108/152 Verifying : krb5-libs-1.21.2-3.fc39.x86_64 109/152 Verifying : libacl-2.3.1-9.fc39.x86_64 110/152 Verifying : libblkid-2.39.4-1.fc39.x86_64 111/152 Verifying : libcap-2.48-9.fc39.x86_64 112/152 Verifying : libcurl-8.2.1-4.fc39.x86_64 113/152 Verifying : libeconf-0.5.2-2.fc39.x86_64 114/152 Verifying : libfdisk-2.39.4-1.fc39.x86_64 115/152 Verifying : libgcc-13.2.1-7.fc39.x86_64 116/152 Verifying : libgomp-13.2.1-7.fc39.x86_64 117/152 Verifying : libidn2-2.3.7-1.fc39.x86_64 118/152 Verifying : libmount-2.39.4-1.fc39.x86_64 119/152 Verifying : libnghttp2-1.55.1-4.fc39.x86_64 120/152 Verifying : libsmartcols-2.39.4-1.fc39.x86_64 121/152 Verifying : libssh-0.10.6-2.fc39.x86_64 122/152 Verifying : libssh-config-0.10.6-2.fc39.noarch 123/152 Verifying : libstdc++-13.2.1-7.fc39.x86_64 124/152 Verifying : libtirpc-1.3.4-1.rc3.fc39.x86_64 125/152 Verifying : libuuid-2.39.4-1.fc39.x86_64 126/152 Verifying : libzstd-1.5.6-1.fc39.x86_64 127/152 Verifying : lua-srpm-macros-1-13.fc39.noarch 128/152 Verifying : ncurses-base-6.4-7.20230520.fc39.1.noarch 129/152 Verifying : ncurses-libs-6.4-7.20230520.fc39.1.x86_64 130/152 Verifying : p11-kit-0.25.3-1.fc39.x86_64 131/152 Verifying : p11-kit-trust-0.25.3-1.fc39.x86_64 132/152 Verifying : pam-1.5.3-3.fc39.x86_64 133/152 Verifying : pam-libs-1.5.3-3.fc39.x86_64 134/152 Verifying : publicsuffix-list-dafsa-20240107-1.fc39.noarch 135/152 Verifying : pyproject-srpm-macros-1.12.0-1.fc39.noarch 136/152 Verifying : qt5-srpm-macros-5.15.12-1.fc39.noarch 137/152 Verifying : qt6-srpm-macros-6.6.2-1.fc39.noarch 138/152 Verifying : readline-8.2-6.fc39.x86_64 139/152 Verifying : redhat-rpm-config-266-1.fc39.noarch 140/152 Verifying : rpm-4.19.1.1-1.fc39.x86_64 141/152 Verifying : rpm-build-4.19.1.1-1.fc39.x86_64 142/152 Verifying : rpm-build-libs-4.19.1.1-1.fc39.x86_64 143/152 Verifying : rpm-libs-4.19.1.1-1.fc39.x86_64 144/152 Verifying : rpm-sequoia-1.6.0-1.fc39.x86_64 145/152 Verifying : rpmautospec-rpm-macros-0.6.3-1.fc39.noarch 146/152 Verifying : rust-srpm-macros-26.2-1.fc39.noarch 147/152 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 148/152 Verifying : systemd-libs-254.10-1.fc39.x86_64 149/152 Verifying : util-linux-2.39.4-1.fc39.x86_64 150/152 Verifying : util-linux-core-2.39.4-1.fc39.x86_64 151/152 Verifying : zstd-1.5.6-1.fc39.x86_64 152/152 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-3.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-17.fc39.x86_64 glibc-common-2.38-17.fc39.x86_64 glibc-gconv-extra-2.38-17.fc39.x86_64 glibc-minimal-langpack-2.38-17.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-4.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-5.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-3.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-17.fc39.x86_64 glibc-common-2.38-17.fc39.x86_64 glibc-gconv-extra-2.38-17.fc39.x86_64 glibc-minimal-langpack-2.38-17.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-4.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-x86_64-1713086410.173302/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1713086410.173302/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1713086410.173302/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1713086410.173302/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-u3sykmso/R-CRAN-pagoda2/R-CRAN-pagoda2.spec) Config(child) 1 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1713086410.173302/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.src.rpm Start: build setup for R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. 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Copr repository 33 kB/s | 1.5 kB 00:00 Copr repository 33 MB/s | 41 MB 00:01 fedora 274 kB/s | 24 kB 00:00 updates 66 kB/s | 21 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-MASS x86_64 7.3.60.0.1-1.fc39.copr6895092 copr_base 1.2 M R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-N2R x86_64 1.0.3-1.fc39.copr7307551 copr_base 187 k R-CRAN-R.utils noarch 2.12.3-1.fc39.copr6664010 copr_base 1.6 M R-CRAN-R6 noarch 2.5.1-1.fc39.copr6279323 copr_base 96 k R-CRAN-RMTstat noarch 0.3.1-1.fc39.copr6281129 copr_base 131 k R-CRAN-Rcpp x86_64 1.0.12-1.fc39.copr6877523 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 0.12.8.2.0-1.fc39.copr7306784 copr_base 934 k R-CRAN-RcppEigen x86_64 0.3.4.0.0-1.fc39.copr7306782 copr_base 1.4 M R-CRAN-RcppProgress noarch 0.4.2-3.fc39.copr6279637 copr_base 35 k R-CRAN-Rook x86_64 1.2-1.fc39.copr6282873 copr_base 390 k R-CRAN-Rtsne x86_64 0.17-1.fc39.copr6733037 copr_base 117 k R-CRAN-dendsort noarch 0.3.4-1.fc39.copr6280067 copr_base 1.1 M R-CRAN-drat noarch 0.2.4-1.fc39.copr6511598 copr_base 212 k R-CRAN-fastcluster x86_64 1.2.6-1.fc39.copr6889371 copr_base 194 k R-CRAN-igraph x86_64 2.0.3-1.fc39.copr7306786 copr_base 5.1 M R-CRAN-irlba x86_64 2.3.5.1-1.fc39.copr6664803 copr_base 301 k R-CRAN-magrittr x86_64 2.0.3-1.fc39.copr6279321 copr_base 222 k R-CRAN-mgcv x86_64 1.9.1-1.fc39.copr6775870 copr_base 3.3 M R-CRAN-plyr x86_64 1.8.9-1.fc39.copr6484845 copr_base 856 k R-CRAN-rjson x86_64 0.2.21-1.fc39.copr6279444 copr_base 156 k R-CRAN-rlang x86_64 1.1.3-1.fc39.copr6880930 copr_base 1.6 M R-CRAN-sccore x86_64 1.0.5-1.fc39.copr7307552 copr_base 868 k R-CRAN-urltools x86_64 1.7.3-3.fc39.copr6285263 copr_base 271 k R-core x86_64 4.3.3-1.fc39 updates 64 M R-devel x86_64 4.3.3-1.fc39 updates 10 k Installing dependencies: R-CRAN-FNN x86_64 1.1.4-1.fc39.copr6889375 copr_base 141 k R-CRAN-R.methodsS3 noarch 1.8.2-1.fc39.copr6279475 copr_base 100 k R-CRAN-R.oo noarch 1.26.0-1.fc39.copr6948909 copr_base 1.1 M R-CRAN-RColorBrewer noarch 1.1.3-1.fc39.copr6279333 copr_base 65 k R-CRAN-RcppAnnoy x86_64 0.0.22-1.fc39.copr6944139 copr_base 245 k R-CRAN-brew noarch 1.0.10-1.fc39.copr6763627 copr_base 67 k R-CRAN-cli x86_64 3.6.2-1.fc39.copr6742501 copr_base 1.3 M R-CRAN-colorspace x86_64 2.1.0-1.fc39.copr6279338 copr_base 2.4 M R-CRAN-dplyr x86_64 1.1.4-1.fc39.copr6691319 copr_base 1.5 M R-CRAN-fansi x86_64 1.0.6-1.fc39.copr6735917 copr_base 339 k R-CRAN-farver x86_64 2.1.1-1.fc39.copr6279385 copr_base 1.3 M R-CRAN-generics noarch 0.1.3-1.fc39.copr6279393 copr_base 100 k R-CRAN-ggplot2 noarch 3.5.0-1.fc39.copr7306791 copr_base 4.6 M R-CRAN-ggrepel x86_64 0.9.5-1.fc39.copr6880946 copr_base 271 k R-CRAN-glue x86_64 1.7.0-1.fc39.copr6877494 copr_base 165 k R-CRAN-gtable noarch 0.3.4-1.fc39.copr6523581 copr_base 231 k R-CRAN-isoband x86_64 0.2.7-1.fc39.copr6280488 copr_base 1.6 M R-CRAN-labeling noarch 0.4.3-1.fc39.copr6354313 copr_base 77 k R-CRAN-lattice x86_64 0.22.6-1.fc39.copr7307082 copr_base 1.4 M R-CRAN-lifecycle noarch 1.0.4-1.fc39.copr6614518 copr_base 130 k R-CRAN-munsell noarch 0.5.1-1.fc39.copr7306785 copr_base 251 k R-CRAN-nlme x86_64 3.1.164-1.fc39.copr6700968 copr_base 2.4 M R-CRAN-pROC x86_64 1.18.5-1.fc39.copr6589776 copr_base 873 k R-CRAN-pbmcapply x86_64 1.5.1-1.fc39.copr6279885 copr_base 54 k R-CRAN-pillar noarch 1.9.0-1.fc39.copr6286818 copr_base 626 k R-CRAN-pkgconfig noarch 2.0.3-3.fc39.copr6279322 copr_base 30 k R-CRAN-scales noarch 1.3.0-1.fc39.copr6704012 copr_base 707 k R-CRAN-tibble x86_64 3.2.1-1.fc39.copr6288598 copr_base 632 k R-CRAN-tidyselect noarch 1.2.1-1.fc39.copr7306789 copr_base 230 k R-CRAN-triebeard x86_64 0.4.1-1.fc39.copr6282958 copr_base 154 k R-CRAN-utf8 x86_64 1.2.4-1.fc39.copr6555966 copr_base 150 k R-CRAN-uwot x86_64 0.1.16-1.fc39.copr6665555 copr_base 616 k R-CRAN-vctrs x86_64 0.6.5-1.fc39.copr6715464 copr_base 1.3 M R-CRAN-viridisLite noarch 0.4.2-1.fc39.copr6279312 copr_base 1.2 M R-CRAN-withr noarch 3.0.0-1.fc39.copr6911503 copr_base 265 k R-core-devel x86_64 4.3.3-1.fc39 updates 94 k R-java x86_64 4.3.3-1.fc39 updates 11 k R-java-devel x86_64 4.3.3-1.fc39 updates 10 k R-littler x86_64 0.3.19-1.fc39 updates 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.11-2.fc39 updates 521 k annobin-docs noarch 12.46-1.fc39 updates 88 k annobin-plugin-gcc x86_64 12.46-1.fc39 updates 958 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-7.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.7-11.fc39 updates 269 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.3-1.fc39 updates 7.2 k expat x86_64 2.6.2-1.fc39 updates 114 k flexiblas x86_64 3.4.2-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.2-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.2-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.2-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.2-1.fc39 updates 18 k flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc39 updates 18 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel x86_64 2.14.2-6.fc39 updates 164 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-7.fc39 updates 34 M gcc-c++ x86_64 13.2.1-7.fc39 updates 13 M gcc-gfortran x86_64 13.2.1-7.fc39 updates 12 M gcc-plugin-annobin x86_64 13.2.1-7.fc39 updates 52 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.3-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.3-1.fc39 updates 596 k glibc-devel x86_64 2.38-17.fc39 updates 86 k glibc-headers-x86 noarch 2.38-17.fc39 updates 570 k glpk x86_64 5.0-7.fc39 fedora 387 k gnutls x86_64 3.8.4-1.fc39 updates 1.1 M google-noto-fonts-common noarch 20240101-1.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20240101-1.fc39 updates 593 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-17-openjdk x86_64 1:17.0.9.0.9-3.fc39 updates 407 k java-17-openjdk-devel x86_64 1:17.0.9.0.9-3.fc39 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.9.0.9-3.fc39 updates 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.8.3-200.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-1.fc39 updates 121 k libRmath-devel x86_64 4.3.3-1.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.7-1.fc39 fedora 650 k libX11-common noarch 1.8.7-1.fc39 fedora 176 k libX11-devel x86_64 1.8.7-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.7-1.fc39 fedora 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.2.1-7.fc39 updates 904 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.2.1-7.fc39 updates 200 k libquadmath-devel x86_64 13.2.1-7.fc39 updates 41 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.2.1-7.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.4-1.rc3.fc39 updates 124 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-19.fc39 updates 137 k nss x86_64 3.99.0-1.fc39 updates 702 k nss-softokn x86_64 3.99.0-1.fc39 updates 419 k nss-softokn-freebl x86_64 3.99.0-1.fc39 updates 381 k nss-sysinit x86_64 3.99.0-1.fc39 updates 18 k nss-util x86_64 3.99.0-1.fc39 updates 87 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python3 x86_64 3.12.2-2.fc39 updates 27 k python3-libs x86_64 3.12.2-2.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-7.fc39 fedora 1.5 M suitesparse x86_64 5.13.0-3.fc39 fedora 1.1 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ======================================================================================== Install 217 Packages Total download size: 321 M Installed size: 956 M Downloading Packages: (1/217): R-CRAN-FNN-1.1.4-1.fc39.copr6889375.x8 2.4 MB/s | 141 kB 00:00 (2/217): R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895 13 MB/s | 1.2 MB 00:00 (3/217): R-CRAN-R.methodsS3-1.8.2-1.fc39.copr62 4.7 MB/s | 100 kB 00:00 (4/217): R-CRAN-Matrix-1.6.5-1.fc39.copr6886765 29 MB/s | 4.1 MB 00:00 (5/217): R-CRAN-R.oo-1.26.0-1.fc39.copr6948909. 28 MB/s | 1.1 MB 00:00 (6/217): R-CRAN-R.utils-2.12.3-1.fc39.copr66640 47 MB/s | 1.6 MB 00:00 (7/217): R-CRAN-N2R-1.0.3-1.fc39.copr7307551.x8 1.5 MB/s | 187 kB 00:00 (8/217): R-CRAN-R6-2.5.1-1.fc39.copr6279323.noa 3.0 MB/s | 96 kB 00:00 (9/217): R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6 6.5 MB/s | 65 kB 00:00 (10/217): R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523 41 MB/s | 2.0 MB 00:00 (11/217): R-CRAN-RcppAnnoy-0.0.22-1.fc39.copr69 5.1 MB/s | 245 kB 00:00 (12/217): R-CRAN-RMTstat-0.3.1-1.fc39.copr62811 2.0 MB/s | 131 kB 00:00 (13/217): R-CRAN-RcppArmadillo-0.12.8.2.0-1.fc3 19 MB/s | 934 kB 00:00 (14/217): R-CRAN-RcppEigen-0.3.4.0.0-1.fc39.cop 18 MB/s | 1.4 MB 00:00 (15/217): R-CRAN-RcppProgress-0.4.2-3.fc39.copr 485 kB/s | 35 kB 00:00 (16/217): R-CRAN-Rook-1.2-1.fc39.copr6282873.x8 7.5 MB/s | 390 kB 00:00 (17/217): R-CRAN-brew-1.0.10-1.fc39.copr6763627 3.6 MB/s | 67 kB 00:00 (18/217): R-CRAN-cli-3.6.2-1.fc39.copr6742501.x 44 MB/s | 1.3 MB 00:00 (19/217): R-CRAN-colorspace-2.1.0-1.fc39.copr62 22 MB/s | 2.4 MB 00:00 (20/217): R-CRAN-dendsort-0.3.4-1.fc39.copr6280 14 MB/s | 1.1 MB 00:00 (21/217): R-CRAN-Rtsne-0.17-1.fc39.copr6733037. 900 kB/s | 117 kB 00:00 (22/217): R-CRAN-dplyr-1.1.4-1.fc39.copr6691319 49 MB/s | 1.5 MB 00:00 (23/217): R-CRAN-fansi-1.0.6-1.fc39.copr6735917 8.9 MB/s | 339 kB 00:00 (24/217): R-CRAN-farver-2.1.1-1.fc39.copr627938 25 MB/s | 1.3 MB 00:00 (25/217): R-CRAN-fastcluster-1.2.6-1.fc39.copr6 4.2 MB/s | 194 kB 00:00 (26/217): R-CRAN-generics-0.1.3-1.fc39.copr6279 10 MB/s | 100 kB 00:00 (27/217): R-CRAN-drat-0.2.4-1.fc39.copr6511598. 1.3 MB/s | 212 kB 00:00 (28/217): R-CRAN-ggplot2-3.5.0-1.fc39.copr73067 38 MB/s | 4.6 MB 00:00 (29/217): R-CRAN-ggrepel-0.9.5-1.fc39.copr68809 2.3 MB/s | 271 kB 00:00 (30/217): R-CRAN-glue-1.7.0-1.fc39.copr6877494. 3.7 MB/s | 165 kB 00:00 (31/217): R-CRAN-gtable-0.3.4-1.fc39.copr652358 15 MB/s | 231 kB 00:00 (32/217): R-CRAN-irlba-2.3.5.1-1.fc39.copr66648 11 MB/s | 301 kB 00:00 (33/217): R-CRAN-igraph-2.0.3-1.fc39.copr730678 50 MB/s | 5.1 MB 00:00 (34/217): R-CRAN-isoband-0.2.7-1.fc39.copr62804 16 MB/s | 1.6 MB 00:00 (35/217): R-CRAN-labeling-0.4.3-1.fc39.copr6354 868 kB/s | 77 kB 00:00 (36/217): R-CRAN-lattice-0.22.6-1.fc39.copr7307 55 MB/s | 1.4 MB 00:00 (37/217): R-CRAN-lifecycle-1.0.4-1.fc39.copr661 7.1 MB/s | 130 kB 00:00 (38/217): R-CRAN-magrittr-2.0.3-1.fc39.copr6279 8.6 MB/s | 222 kB 00:00 (39/217): R-CRAN-mgcv-1.9.1-1.fc39.copr6775870. 72 MB/s | 3.3 MB 00:00 (40/217): R-CRAN-munsell-0.5.1-1.fc39.copr73067 5.2 MB/s | 251 kB 00:00 (41/217): R-CRAN-nlme-3.1.164-1.fc39.copr670096 39 MB/s | 2.4 MB 00:00 (42/217): R-CRAN-pROC-1.18.5-1.fc39.copr6589776 30 MB/s | 873 kB 00:00 (43/217): R-CRAN-pbmcapply-1.5.1-1.fc39.copr627 1.9 MB/s | 54 kB 00:00 (44/217): R-CRAN-pillar-1.9.0-1.fc39.copr628681 41 MB/s | 626 kB 00:00 (45/217): R-CRAN-pkgconfig-2.0.3-3.fc39.copr627 2.9 MB/s | 30 kB 00:00 (46/217): R-CRAN-plyr-1.8.9-1.fc39.copr6484845. 49 MB/s | 856 kB 00:00 (47/217): R-CRAN-rlang-1.1.3-1.fc39.copr6880930 63 MB/s | 1.6 MB 00:00 (48/217): R-CRAN-rjson-0.2.21-1.fc39.copr627944 5.3 MB/s | 156 kB 00:00 (49/217): R-CRAN-scales-1.3.0-1.fc39.copr670401 27 MB/s | 707 kB 00:00 (50/217): R-CRAN-tibble-3.2.1-1.fc39.copr628859 40 MB/s | 632 kB 00:00 (51/217): R-CRAN-tidyselect-1.2.1-1.fc39.copr73 16 MB/s | 230 kB 00:00 (52/217): R-CRAN-sccore-1.0.5-1.fc39.copr730755 32 MB/s | 868 kB 00:00 (53/217): R-CRAN-triebeard-0.4.1-1.fc39.copr628 14 MB/s | 154 kB 00:00 (54/217): R-CRAN-urltools-1.7.3-3.fc39.copr6285 23 MB/s | 271 kB 00:00 (55/217): R-CRAN-utf8-1.2.4-1.fc39.copr6555966. 15 MB/s | 150 kB 00:00 (56/217): R-CRAN-uwot-0.1.16-1.fc39.copr6665555 37 MB/s | 616 kB 00:00 (57/217): R-CRAN-vctrs-0.6.5-1.fc39.copr6715464 49 MB/s | 1.3 MB 00:00 (58/217): R-CRAN-viridisLite-0.4.2-1.fc39.copr6 40 MB/s | 1.2 MB 00:00 (59/217): R-CRAN-withr-3.0.0-1.fc39.copr6911503 10 MB/s | 265 kB 00:00 (60/217): R-rpm-macros-1.2.1-7.fc39.noarch.rpm 77 kB/s | 11 kB 00:00 (61/217): 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transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 1/1 Preparing : 1/1 Installing : zlib-devel-1.2.13-4.fc39.x86_64 1/217 Installing : nspr-4.35.0-19.fc39.x86_64 2/217 Installing : libgfortran-13.2.1-7.fc39.x86_64 3/217 Installing : nss-util-3.99.0-1.fc39.x86_64 4/217 Installing : libquadmath-13.2.1-7.fc39.x86_64 5/217 Installing : xorg-x11-proto-devel-2023.2-2.fc39.noarch 6/217 Installing : libpng-2:1.6.37-15.fc39.x86_64 7/217 Installing : libmpc-1.3.1-3.fc39.x86_64 8/217 Installing : tcl-1:8.6.12-5.fc39.x86_64 9/217 Installing : libicu-73.2-2.fc39.x86_64 10/217 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 11/217 Installing : libicu-devel-73.2-2.fc39.x86_64 12/217 Installing : tcl-devel-1:8.6.12-5.fc39.x86_64 13/217 Installing : libRmath-4.3.3-1.fc39.x86_64 14/217 Installing : xz-devel-5.4.4-1.fc39.x86_64 15/217 Installing : openblas-0.3.21-6.fc39.x86_64 16/217 Installing : 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scriptlet: gcc-plugin-annobin-13.2.1-7.fc39.x86_64 217/217 Verifying : R-CRAN-FNN-1.1.4-1.fc39.copr6889375.x86_64 1/217 Verifying : R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 2/217 Verifying : R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 3/217 Verifying : R-CRAN-N2R-1.0.3-1.fc39.copr7307551.x86_64 4/217 Verifying : R-CRAN-R.methodsS3-1.8.2-1.fc39.copr6279475.noar 5/217 Verifying : R-CRAN-R.oo-1.26.0-1.fc39.copr6948909.noarch 6/217 Verifying : R-CRAN-R.utils-2.12.3-1.fc39.copr6664010.noarch 7/217 Verifying : R-CRAN-R6-2.5.1-1.fc39.copr6279323.noarch 8/217 Verifying : R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6279333.noa 9/217 Verifying : R-CRAN-RMTstat-0.3.1-1.fc39.copr6281129.noarch 10/217 Verifying : R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523.x86_64 11/217 Verifying : R-CRAN-RcppAnnoy-0.0.22-1.fc39.copr6944139.x86_6 12/217 Verifying : R-CRAN-RcppArmadillo-0.12.8.2.0-1.fc39.copr73067 13/217 Verifying : R-CRAN-RcppEigen-0.3.4.0.0-1.fc39.copr7306782.x8 14/217 Verifying : R-CRAN-RcppProgress-0.4.2-3.fc39.copr6279637.noa 15/217 Verifying : R-CRAN-Rook-1.2-1.fc39.copr6282873.x86_64 16/217 Verifying : R-CRAN-Rtsne-0.17-1.fc39.copr6733037.x86_64 17/217 Verifying : R-CRAN-brew-1.0.10-1.fc39.copr6763627.noarch 18/217 Verifying : R-CRAN-cli-3.6.2-1.fc39.copr6742501.x86_64 19/217 Verifying : R-CRAN-colorspace-2.1.0-1.fc39.copr6279338.x86_6 20/217 Verifying : R-CRAN-dendsort-0.3.4-1.fc39.copr6280067.noarch 21/217 Verifying : R-CRAN-dplyr-1.1.4-1.fc39.copr6691319.x86_64 22/217 Verifying : R-CRAN-drat-0.2.4-1.fc39.copr6511598.noarch 23/217 Verifying : R-CRAN-fansi-1.0.6-1.fc39.copr6735917.x86_64 24/217 Verifying : R-CRAN-farver-2.1.1-1.fc39.copr6279385.x86_64 25/217 Verifying : R-CRAN-fastcluster-1.2.6-1.fc39.copr6889371.x86_ 26/217 Verifying : R-CRAN-generics-0.1.3-1.fc39.copr6279393.noarch 27/217 Verifying : R-CRAN-ggplot2-3.5.0-1.fc39.copr7306791.noarch 28/217 Verifying : R-CRAN-ggrepel-0.9.5-1.fc39.copr6880946.x86_64 29/217 Verifying : R-CRAN-glue-1.7.0-1.fc39.copr6877494.x86_64 30/217 Verifying : R-CRAN-gtable-0.3.4-1.fc39.copr6523581.noarch 31/217 Verifying : R-CRAN-igraph-2.0.3-1.fc39.copr7306786.x86_64 32/217 Verifying : R-CRAN-irlba-2.3.5.1-1.fc39.copr6664803.x86_64 33/217 Verifying : R-CRAN-isoband-0.2.7-1.fc39.copr6280488.x86_64 34/217 Verifying : R-CRAN-labeling-0.4.3-1.fc39.copr6354313.noarch 35/217 Verifying : R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 36/217 Verifying : R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch 37/217 Verifying : R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64 38/217 Verifying : R-CRAN-mgcv-1.9.1-1.fc39.copr6775870.x86_64 39/217 Verifying : R-CRAN-munsell-0.5.1-1.fc39.copr7306785.noarch 40/217 Verifying : R-CRAN-nlme-3.1.164-1.fc39.copr6700968.x86_64 41/217 Verifying : R-CRAN-pROC-1.18.5-1.fc39.copr6589776.x86_64 42/217 Verifying : R-CRAN-pbmcapply-1.5.1-1.fc39.copr6279885.x86_64 43/217 Verifying : R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch 44/217 Verifying : R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch 45/217 Verifying : R-CRAN-plyr-1.8.9-1.fc39.copr6484845.x86_64 46/217 Verifying : R-CRAN-rjson-0.2.21-1.fc39.copr6279444.x86_64 47/217 Verifying : R-CRAN-rlang-1.1.3-1.fc39.copr6880930.x86_64 48/217 Verifying : R-CRAN-scales-1.3.0-1.fc39.copr6704012.noarch 49/217 Verifying : R-CRAN-sccore-1.0.5-1.fc39.copr7307552.x86_64 50/217 Verifying : R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 51/217 Verifying : R-CRAN-tidyselect-1.2.1-1.fc39.copr7306789.noarc 52/217 Verifying : R-CRAN-triebeard-0.4.1-1.fc39.copr6282958.x86_64 53/217 Verifying : R-CRAN-urltools-1.7.3-3.fc39.copr6285263.x86_64 54/217 Verifying : R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 55/217 Verifying : R-CRAN-uwot-0.1.16-1.fc39.copr6665555.x86_64 56/217 Verifying : R-CRAN-vctrs-0.6.5-1.fc39.copr6715464.x86_64 57/217 Verifying : R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noar 58/217 Verifying : R-CRAN-withr-3.0.0-1.fc39.copr6911503.noarch 59/217 Verifying : R-rpm-macros-1.2.1-7.fc39.noarch 60/217 Verifying : abattis-cantarell-vf-fonts-0.301-10.fc39.noarch 61/217 Verifying : avahi-libs-0.8-24.fc39.x86_64 62/217 Verifying : brotli-1.1.0-1.fc39.x86_64 63/217 Verifying : brotli-devel-1.1.0-1.fc39.x86_64 64/217 Verifying : bzip2-devel-1.0.8-16.fc39.x86_64 65/217 Verifying : cairo-1.18.0-1.fc39.x86_64 66/217 Verifying : cmake-filesystem-3.27.7-1.fc39.x86_64 67/217 Verifying : copy-jdk-configs-4.1-3.fc39.noarch 68/217 Verifying : dbus-libs-1:1.14.10-1.fc39.x86_64 69/217 Verifying : default-fonts-core-sans-4.0-9.fc39.noarch 70/217 Verifying : desktop-file-utils-0.26-9.fc39.x86_64 71/217 Verifying : fonts-filesystem-1:2.0.5-12.fc39.noarch 72/217 Verifying : freetype-2.13.1-2.fc39.x86_64 73/217 Verifying : freetype-devel-2.13.1-2.fc39.x86_64 74/217 Verifying : fribidi-1.0.13-2.fc39.x86_64 75/217 Verifying : gc-8.2.2-4.fc39.x86_64 76/217 Verifying : gettext-0.22-2.fc39.x86_64 77/217 Verifying : gettext-envsubst-0.22-2.fc39.x86_64 78/217 Verifying : gettext-libs-0.22-2.fc39.x86_64 79/217 Verifying : gettext-runtime-0.22-2.fc39.x86_64 80/217 Verifying : glpk-5.0-7.fc39.x86_64 81/217 Verifying : graphite2-1.3.14-12.fc39.x86_64 82/217 Verifying : graphite2-devel-1.3.14-12.fc39.x86_64 83/217 Verifying : guile22-2.2.7-9.fc39.x86_64 84/217 Verifying : harfbuzz-8.2.1-2.fc39.x86_64 85/217 Verifying : harfbuzz-devel-8.2.1-2.fc39.x86_64 86/217 Verifying : harfbuzz-icu-8.2.1-2.fc39.x86_64 87/217 Verifying : javapackages-filesystem-6.1.0-10.fc39.noarch 88/217 Verifying : jbigkit-libs-2.1-26.fc39.x86_64 89/217 Verifying : libICE-1.0.10-11.fc39.x86_64 90/217 Verifying : libSM-1.2.3-13.fc39.x86_64 91/217 Verifying : libX11-1.8.7-1.fc39.x86_64 92/217 Verifying : libX11-common-1.8.7-1.fc39.noarch 93/217 Verifying : libX11-devel-1.8.7-1.fc39.x86_64 94/217 Verifying : libX11-xcb-1.8.7-1.fc39.x86_64 95/217 Verifying : libXau-1.0.11-3.fc39.x86_64 96/217 Verifying : libXau-devel-1.0.11-3.fc39.x86_64 97/217 Verifying : libXcomposite-0.4.5-10.fc39.x86_64 98/217 Verifying : libXext-1.3.5-3.fc39.x86_64 99/217 Verifying : libXft-2.3.8-3.fc39.x86_64 100/217 Verifying : libXft-devel-2.3.8-3.fc39.x86_64 101/217 Verifying : libXi-1.8.1-2.fc39.x86_64 102/217 Verifying : libXmu-1.1.4-3.fc39.x86_64 103/217 Verifying : libXrender-0.9.11-3.fc39.x86_64 104/217 Verifying : libXrender-devel-0.9.11-3.fc39.x86_64 105/217 Verifying : libXt-1.2.1-5.fc39.x86_64 106/217 Verifying : libXtst-1.2.4-3.fc39.x86_64 107/217 Verifying : libb2-0.98.1-9.fc39.x86_64 108/217 Verifying : libdatrie-0.2.13-7.fc39.x86_64 109/217 Verifying : libffi-devel-3.4.4-4.fc39.x86_64 110/217 Verifying : libfontenc-1.1.6-3.fc39.x86_64 111/217 Verifying : libicu-73.2-2.fc39.x86_64 112/217 Verifying : libicu-devel-73.2-2.fc39.x86_64 113/217 Verifying : libjpeg-turbo-2.1.4-3.fc39.x86_64 114/217 Verifying : liblerc-4.0.0-4.fc39.x86_64 115/217 Verifying : libmpc-1.3.1-3.fc39.x86_64 116/217 Verifying : libpng-2:1.6.37-15.fc39.x86_64 117/217 Verifying : libpng-devel-2:1.6.37-15.fc39.x86_64 118/217 Verifying : libselinux-devel-3.5-5.fc39.x86_64 119/217 Verifying : libsepol-devel-3.5-2.fc39.x86_64 120/217 Verifying : libthai-0.1.29-6.fc39.x86_64 121/217 Verifying : libtiff-4.4.0-8.fc39.x86_64 122/217 Verifying : libtool-ltdl-2.4.7-7.fc39.x86_64 123/217 Verifying : libwebp-1.3.2-2.fc39.x86_64 124/217 Verifying : libxcb-1.13.1-12.fc39.x86_64 125/217 Verifying : libxcb-devel-1.13.1-12.fc39.x86_64 126/217 Verifying : libxcrypt-devel-4.4.36-2.fc39.x86_64 127/217 Verifying : libxml2-devel-2.10.4-3.fc39.x86_64 128/217 Verifying : lksctp-tools-1.0.19-4.fc39.x86_64 129/217 Verifying : lua-5.4.6-3.fc39.x86_64 130/217 Verifying : lua-posix-36.2.1-3.fc39.x86_64 131/217 Verifying : make-1:4.4.1-2.fc39.x86_64 132/217 Verifying : mkfontscale-1.2.2-4.fc39.x86_64 133/217 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 134/217 Verifying : nettle-3.9.1-2.fc39.x86_64 135/217 Verifying : openblas-0.3.21-6.fc39.x86_64 136/217 Verifying : openblas-openmp-0.3.21-6.fc39.x86_64 137/217 Verifying : openblas-openmp64-0.3.21-6.fc39.x86_64 138/217 Verifying : pango-1.51.0-1.fc39.x86_64 139/217 Verifying : pcre2-devel-10.42-1.fc39.2.x86_64 140/217 Verifying : pcre2-utf16-10.42-1.fc39.2.x86_64 141/217 Verifying : pcre2-utf32-10.42-1.fc39.2.x86_64 142/217 Verifying : pixman-0.42.2-2.fc39.x86_64 143/217 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 144/217 Verifying : python3-setuptools-67.7.2-7.fc39.noarch 145/217 Verifying : suitesparse-5.13.0-3.fc39.x86_64 146/217 Verifying : tcl-1:8.6.12-5.fc39.x86_64 147/217 Verifying : tcl-devel-1:8.6.12-5.fc39.x86_64 148/217 Verifying : tk-1:8.6.12-5.fc39.x86_64 149/217 Verifying : tk-devel-1:8.6.12-5.fc39.x86_64 150/217 Verifying : tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 151/217 Verifying : tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noar 152/217 Verifying : tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_6 153/217 Verifying : ttmkfdir-3.0.9-69.fc39.x86_64 154/217 Verifying : xdg-utils-1.1.3-15.fc39.noarch 155/217 Verifying : xml-common-0.6.3-61.fc39.noarch 156/217 Verifying : xorg-x11-fonts-Type1-7.5-36.fc39.noarch 157/217 Verifying : xorg-x11-proto-devel-2023.2-2.fc39.noarch 158/217 Verifying : xz-devel-5.4.4-1.fc39.x86_64 159/217 Verifying : zlib-devel-1.2.13-4.fc39.x86_64 160/217 Verifying : R-core-4.3.3-1.fc39.x86_64 161/217 Verifying : R-core-devel-4.3.3-1.fc39.x86_64 162/217 Verifying : R-devel-4.3.3-1.fc39.x86_64 163/217 Verifying : R-java-4.3.3-1.fc39.x86_64 164/217 Verifying : R-java-devel-4.3.3-1.fc39.x86_64 165/217 Verifying : R-littler-0.3.19-1.fc39.x86_64 166/217 Verifying : alsa-lib-1.2.11-2.fc39.x86_64 167/217 Verifying : annobin-docs-12.46-1.fc39.noarch 168/217 Verifying : annobin-plugin-gcc-12.46-1.fc39.x86_64 169/217 Verifying : cpp-13.2.1-7.fc39.x86_64 170/217 Verifying : crypto-policies-scripts-20231204-1.git1e3a2e4.fc 171/217 Verifying : cups-libs-1:2.4.7-11.fc39.x86_64 172/217 Verifying : emacs-filesystem-1:29.3-1.fc39.noarch 173/217 Verifying : expat-2.6.2-1.fc39.x86_64 174/217 Verifying : flexiblas-3.4.2-1.fc39.x86_64 175/217 Verifying : flexiblas-devel-3.4.2-1.fc39.x86_64 176/217 Verifying : flexiblas-netlib-3.4.2-1.fc39.x86_64 177/217 Verifying : flexiblas-netlib64-3.4.2-1.fc39.x86_64 178/217 Verifying : flexiblas-openblas-openmp-3.4.2-1.fc39.x86_64 179/217 Verifying : flexiblas-openblas-openmp64-3.4.2-1.fc39.x86_64 180/217 Verifying : fontconfig-2.14.2-6.fc39.x86_64 181/217 Verifying : fontconfig-devel-2.14.2-6.fc39.x86_64 182/217 Verifying : gcc-13.2.1-7.fc39.x86_64 183/217 Verifying : gcc-c++-13.2.1-7.fc39.x86_64 184/217 Verifying : gcc-gfortran-13.2.1-7.fc39.x86_64 185/217 Verifying : gcc-plugin-annobin-13.2.1-7.fc39.x86_64 186/217 Verifying : glib2-2.78.3-1.fc39.x86_64 187/217 Verifying : glib2-devel-2.78.3-1.fc39.x86_64 188/217 Verifying : glibc-devel-2.38-17.fc39.x86_64 189/217 Verifying : glibc-headers-x86-2.38-17.fc39.noarch 190/217 Verifying : gnutls-3.8.4-1.fc39.x86_64 191/217 Verifying : google-noto-fonts-common-20240101-1.fc39.noarch 192/217 Verifying : google-noto-sans-vf-fonts-20240101-1.fc39.noarch 193/217 Verifying : java-17-openjdk-1:17.0.9.0.9-3.fc39.x86_64 194/217 Verifying : java-17-openjdk-devel-1:17.0.9.0.9-3.fc39.x86_64 195/217 Verifying : java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86 196/217 Verifying : kernel-headers-6.8.3-200.fc39.x86_64 197/217 Verifying : libRmath-4.3.3-1.fc39.x86_64 198/217 Verifying : libRmath-devel-4.3.3-1.fc39.x86_64 199/217 Verifying : libblkid-devel-2.39.4-1.fc39.x86_64 200/217 Verifying : libgfortran-13.2.1-7.fc39.x86_64 201/217 Verifying : libmount-devel-2.39.4-1.fc39.x86_64 202/217 Verifying : libquadmath-13.2.1-7.fc39.x86_64 203/217 Verifying : libquadmath-devel-13.2.1-7.fc39.x86_64 204/217 Verifying : libstdc++-devel-13.2.1-7.fc39.x86_64 205/217 Verifying : libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 206/217 Verifying : nspr-4.35.0-19.fc39.x86_64 207/217 Verifying : nss-3.99.0-1.fc39.x86_64 208/217 Verifying : nss-softokn-3.99.0-1.fc39.x86_64 209/217 Verifying : nss-softokn-freebl-3.99.0-1.fc39.x86_64 210/217 Verifying : nss-sysinit-3.99.0-1.fc39.x86_64 211/217 Verifying : nss-util-3.99.0-1.fc39.x86_64 212/217 Verifying : python3-3.12.2-2.fc39.x86_64 213/217 Verifying : python3-libs-3.12.2-2.fc39.x86_64 214/217 Verifying : sysprof-capture-devel-45.1-1.fc39.x86_64 215/217 Verifying : tzdata-2024a-2.fc39.noarch 216/217 Verifying : tzdata-java-2024a-2.fc39.noarch 217/217 Installed products updated. Installed: R-CRAN-FNN-1.1.4-1.fc39.copr6889375.x86_64 R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-N2R-1.0.3-1.fc39.copr7307551.x86_64 R-CRAN-R.methodsS3-1.8.2-1.fc39.copr6279475.noarch R-CRAN-R.oo-1.26.0-1.fc39.copr6948909.noarch R-CRAN-R.utils-2.12.3-1.fc39.copr6664010.noarch R-CRAN-R6-2.5.1-1.fc39.copr6279323.noarch R-CRAN-RColorBrewer-1.1.3-1.fc39.copr6279333.noarch R-CRAN-RMTstat-0.3.1-1.fc39.copr6281129.noarch R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523.x86_64 R-CRAN-RcppAnnoy-0.0.22-1.fc39.copr6944139.x86_64 R-CRAN-RcppArmadillo-0.12.8.2.0-1.fc39.copr7306784.x86_64 R-CRAN-RcppEigen-0.3.4.0.0-1.fc39.copr7306782.x86_64 R-CRAN-RcppProgress-0.4.2-3.fc39.copr6279637.noarch R-CRAN-Rook-1.2-1.fc39.copr6282873.x86_64 R-CRAN-Rtsne-0.17-1.fc39.copr6733037.x86_64 R-CRAN-brew-1.0.10-1.fc39.copr6763627.noarch R-CRAN-cli-3.6.2-1.fc39.copr6742501.x86_64 R-CRAN-colorspace-2.1.0-1.fc39.copr6279338.x86_64 R-CRAN-dendsort-0.3.4-1.fc39.copr6280067.noarch R-CRAN-dplyr-1.1.4-1.fc39.copr6691319.x86_64 R-CRAN-drat-0.2.4-1.fc39.copr6511598.noarch R-CRAN-fansi-1.0.6-1.fc39.copr6735917.x86_64 R-CRAN-farver-2.1.1-1.fc39.copr6279385.x86_64 R-CRAN-fastcluster-1.2.6-1.fc39.copr6889371.x86_64 R-CRAN-generics-0.1.3-1.fc39.copr6279393.noarch R-CRAN-ggplot2-3.5.0-1.fc39.copr7306791.noarch R-CRAN-ggrepel-0.9.5-1.fc39.copr6880946.x86_64 R-CRAN-glue-1.7.0-1.fc39.copr6877494.x86_64 R-CRAN-gtable-0.3.4-1.fc39.copr6523581.noarch R-CRAN-igraph-2.0.3-1.fc39.copr7306786.x86_64 R-CRAN-irlba-2.3.5.1-1.fc39.copr6664803.x86_64 R-CRAN-isoband-0.2.7-1.fc39.copr6280488.x86_64 R-CRAN-labeling-0.4.3-1.fc39.copr6354313.noarch R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch R-CRAN-magrittr-2.0.3-1.fc39.copr6279321.x86_64 R-CRAN-mgcv-1.9.1-1.fc39.copr6775870.x86_64 R-CRAN-munsell-0.5.1-1.fc39.copr7306785.noarch R-CRAN-nlme-3.1.164-1.fc39.copr6700968.x86_64 R-CRAN-pROC-1.18.5-1.fc39.copr6589776.x86_64 R-CRAN-pbmcapply-1.5.1-1.fc39.copr6279885.x86_64 R-CRAN-pillar-1.9.0-1.fc39.copr6286818.noarch R-CRAN-pkgconfig-2.0.3-3.fc39.copr6279322.noarch R-CRAN-plyr-1.8.9-1.fc39.copr6484845.x86_64 R-CRAN-rjson-0.2.21-1.fc39.copr6279444.x86_64 R-CRAN-rlang-1.1.3-1.fc39.copr6880930.x86_64 R-CRAN-scales-1.3.0-1.fc39.copr6704012.noarch R-CRAN-sccore-1.0.5-1.fc39.copr7307552.x86_64 R-CRAN-tibble-3.2.1-1.fc39.copr6288598.x86_64 R-CRAN-tidyselect-1.2.1-1.fc39.copr7306789.noarch R-CRAN-triebeard-0.4.1-1.fc39.copr6282958.x86_64 R-CRAN-urltools-1.7.3-3.fc39.copr6285263.x86_64 R-CRAN-utf8-1.2.4-1.fc39.copr6555966.x86_64 R-CRAN-uwot-0.1.16-1.fc39.copr6665555.x86_64 R-CRAN-vctrs-0.6.5-1.fc39.copr6715464.x86_64 R-CRAN-viridisLite-0.4.2-1.fc39.copr6279312.noarch R-CRAN-withr-3.0.0-1.fc39.copr6911503.noarch R-core-4.3.3-1.fc39.x86_64 R-core-devel-4.3.3-1.fc39.x86_64 R-devel-4.3.3-1.fc39.x86_64 R-java-4.3.3-1.fc39.x86_64 R-java-devel-4.3.3-1.fc39.x86_64 R-littler-0.3.19-1.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.11-2.fc39.x86_64 annobin-docs-12.46-1.fc39.noarch annobin-plugin-gcc-12.46-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.27.7-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-7.fc39.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc39.noarch cups-libs-1:2.4.7-11.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.3-1.fc39.noarch expat-2.6.2-1.fc39.x86_64 flexiblas-3.4.2-1.fc39.x86_64 flexiblas-devel-3.4.2-1.fc39.x86_64 flexiblas-netlib-3.4.2-1.fc39.x86_64 flexiblas-netlib64-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp64-3.4.2-1.fc39.x86_64 fontconfig-2.14.2-6.fc39.x86_64 fontconfig-devel-2.14.2-6.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-7.fc39.x86_64 gcc-c++-13.2.1-7.fc39.x86_64 gcc-gfortran-13.2.1-7.fc39.x86_64 gcc-plugin-annobin-13.2.1-7.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.3-1.fc39.x86_64 glib2-devel-2.78.3-1.fc39.x86_64 glibc-devel-2.38-17.fc39.x86_64 glibc-headers-x86-2.38-17.fc39.noarch glpk-5.0-7.fc39.x86_64 gnutls-3.8.4-1.fc39.x86_64 google-noto-fonts-common-20240101-1.fc39.noarch google-noto-sans-vf-fonts-20240101-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-17-openjdk-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-devel-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.8.3-200.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.3-1.fc39.x86_64 libRmath-devel-4.3.3-1.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.7-1.fc39.x86_64 libX11-common-1.8.7-1.fc39.noarch libX11-devel-1.8.7-1.fc39.x86_64 libX11-xcb-1.8.7-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.4-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.2.1-7.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.4-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.2.1-7.fc39.x86_64 libquadmath-devel-13.2.1-7.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.2.1-7.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc39.x86_64 libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.19-4.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-19.fc39.x86_64 nss-3.99.0-1.fc39.x86_64 nss-softokn-3.99.0-1.fc39.x86_64 nss-softokn-freebl-3.99.0-1.fc39.x86_64 nss-sysinit-3.99.0-1.fc39.x86_64 nss-util-3.99.0-1.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.2-2.fc39.x86_64 python3-libs-3.12.2-2.fc39.x86_64 python3-setuptools-67.7.2-7.fc39.noarch suitesparse-5.13.0-3.fc39.x86_64 sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.src.rpm Start: rpmbuild R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zfQJKj + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pagoda2 + /usr/bin/mkdir -p pagoda2 + cd pagoda2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pagoda2_1.0.12.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/pagoda2-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/pagoda2-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d pagoda2/src ']' + find pagoda2/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d pagoda2/src ']' + find pagoda2/src/Makevars pagoda2/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.j4Qj4P + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pagoda2 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.jYCT51 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pagoda2 + mkdir -p /builddir/build/BUILDROOT/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-pagoda2-1.0.12-1.fc39.copr7307957.x86_64/usr/local/lib/R/library pagoda2 * installing *source* package ‘pagoda2’ ... ** package ‘pagoda2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -I"./include" -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:6: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -I"./include" -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c binaryExport.cpp -o binaryExport.o binaryExport.cpp: In function ‘void WriteListToBinary(Rcpp::List, std::string, bool)’: binaryExport.cpp:235:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 235 | for (int embedIndex = 0; embedIndex != embedList.size(); ++embedIndex) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -I"./include" -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c checkfunctions.cpp -o checkfunctions.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from ./include/largeVis.h:9, from checkfunctions.cpp:2: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -I"./include" -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c edgeweights.cpp -o edgeweights.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from ./include/largeVis.h:9, from edgeweights.cpp:9: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ edgeweights.cpp: In member function ‘Eigen::SparseMatrix ReferenceEdges::getWIJ()’: edgeweights.cpp:150:31: warning: comparison of integer expressions of different signedness: ‘edgeidxtype’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | for (edgeidxtype i = 0; i < edge_from.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1040:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ edgeweights.cpp:155:24: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ edgeweights.cpp:155:24: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:79:45: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:38:16: required from ‘Derived& Eigen::SparseMatrixBase::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; Derived = Eigen::SparseMatrix]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1239:27: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ edgeweights.cpp:155:24: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -I"./include" -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c gradients.cpp -o gradients.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from ./include/largeVis.h:9, from gradients.cpp:3: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ gradients.cpp: In member function ‘distancetype Gradient::distAndVector(const coordinatetype*, const coordinatetype*, coordinatetype*) const’: gradients.cpp:20:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const dimidxtype’ {aka ‘const unsigned int’} [-Wsign-compare] 20 | for (int d = 0; d < D; d++) { | ~~^~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -I"./include" -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c largeVis.cpp -o largeVis.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from ./include/largeVis.h:9, from largeVis.cpp:4: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ largeVis.cpp: In constructor ‘MomentumVisualizer::MomentumVisualizer(vertexidxtype*, vertexidxtype*, coordinatetype*, const dimidxtype&, const vertexidxtype&, const edgeidxtype&, distancetype, const iterationtype&, const float&, const unsigned int&, const double&, const double&)’: largeVis.cpp:167:45: warning: comparison of integer expressions of different signedness: ‘vertexidxtype’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 167 | for (vertexidxtype i = 0; i != D*N; ++i) momentumarray[i] = 0; | ~~^~~~~~ largeVis.cpp: In function ‘arma::mat sgd(arma::mat&, arma::ivec&, arma::ivec&, arma::ivec&, arma::vec&, const double&, const double&, const arma::uword&, const int&, const double&, Rcpp::Nullable >, const bool&, Rcpp::Nullable >, Rcpp::Nullable >, bool)’: largeVis.cpp:257:43: warning: comparison of integer expressions of different signedness: ‘edgeidxtype’ {aka ‘int’} and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 257 | for (edgeidxtype e = 0; e < targets_i.n_elem; ++e) negweights[targets_i[e]]++; | ~~^~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppProgress/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -I"./include" -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c misc2.cpp -o misc2.o misc2.cpp: In function ‘int non0LogColLmS(SEXP, const arma::mat&, const arma::vec&, int, int)’: misc2.cpp:25:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 25 | for(int g=1;g