Warning: Permanently added '44.204.61.222' (ED25519) to the list of known hosts. 100 1080k 100 1080k 0 0 52.5M 0 --:--:-- --:--:-- --:--:-- 52.7M INFO: Reading stdout from command: md5sum spOccupancy_0.7.6.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-b388fc1a/R-CRAN-spOccupancy/R-CRAN-spOccupancy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-b388fc1a/R-CRAN-spOccupancy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713576205.505942 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-b388fc1a/R-CRAN-spOccupancy/R-CRAN-spOccupancy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-b388fc1a/R-CRAN-spOccupancy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1713576205.505942 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-b388fc1a/R-CRAN-spOccupancy/R-CRAN-spOccupancy.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1713576205.505942/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 75 kB/s | 1.5 kB 00:00 Copr repository 211 MB/s | 36 MB 00:00 fedora 88 kB/s | 24 kB 00:00 updates 169 kB/s | 24 kB 00:00 updates 1.2 MB/s | 471 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-5.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-5.fc39 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-17.fc39 updates 72 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.2-8.fc39 updates 117 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k coreutils-common x86_64 9.3-5.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-4.fc39 updates 345 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.191-2.fc39 updates 559 k elfutils-debuginfod-client x86_64 0.191-2.fc39 updates 38 k elfutils-default-yama-scope noarch 0.191-2.fc39 updates 13 k elfutils-libelf x86_64 0.191-2.fc39 updates 209 k elfutils-libs x86_64 0.191-2.fc39 updates 263 k fedora-gpg-keys noarch 39-1 fedora 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-1 fedora 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.2.0-3.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 14.2-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-17.fc39 updates 2.2 M glibc-common x86_64 2.38-17.fc39 updates 354 k glibc-gconv-extra x86_64 2.38-17.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.2-3.fc39 updates 765 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-1.fc39 fedora 408 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-4.fc39 updates 323 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-7.fc39 updates 115 k libgomp x86_64 13.2.1-7.fc39 updates 324 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-4.fc39 updates 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.2.1-7.fc39 updates 867 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-1.rc3.fc39 updates 93 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc39 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc39 updates 520 k p11-kit-trust x86_64 0.25.3-1.fc39 updates 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.12.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-4.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.12-1.fc39 updates 8.4 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.6.0-1.fc39 updates 848 k rpmautospec-rpm-macros noarch 0.6.3-1.fc39 updates 10 k rust-srpm-macros noarch 26.2-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.10-1.fc39 updates 687 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 179 M Downloading Packages: [SKIPPED] authselect-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch.rpm: Already downloaded [SKIPPED] cpio-2.14-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already 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lz4-libs-1.9.4-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.2.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-8-2.fc39.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-14.fc39.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.6-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.1.1-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] patch-2.7.6-22.fc39.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.42-1.fc39.2.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.42-1.fc39.2.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-51.fc39.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.9.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.9.5-2.fc39.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.9.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.12-4.fc39.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-14.fc39.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.4-1.fc39.noarch.rpm: Already downloaded [SKIPPED] sqlite-libs-3.42.0-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] tar-1.35-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] unzip-6.0-62.fc39.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-40.fc39.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-39.fc39.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.26-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-12.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] bash-5.2.26-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.40-14.fc39.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.40-14.fc39.x86_64.rpm: Already downloaded [SKIPPED] coreutils-9.3-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.3-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20231204-1.git1e3a2e4.fc39.noarch.rpm: Already downloaded [SKIPPED] curl-8.2.1-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-12.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-0.191-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.191-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.191-2.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.191-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.191-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] fedora-release-39-36.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-39-36.noarch.rpm: Already downloaded [SKIPPED] 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Already downloaded [SKIPPED] rpm-sequoia-1.6.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.6.3-1.fc39.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-26.2-1.fc39.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.14.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-254.10-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.39.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.39.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.6-1.fc39.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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Verifying : libarchive-3.7.1-1.fc39.x86_64 32/152 Verifying : libattr-2.5.1-8.fc39.x86_64 33/152 Verifying : libbrotli-1.1.0-1.fc39.x86_64 34/152 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 35/152 Verifying : libcom_err-1.47.0-2.fc39.x86_64 36/152 Verifying : libdb-5.3.28-56.fc39.x86_64 37/152 Verifying : libevent-2.1.12-9.fc39.x86_64 38/152 Verifying : libffi-3.4.4-4.fc39.x86_64 39/152 Verifying : libnsl2-2.0.0-6.fc39.x86_64 40/152 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 41/152 Verifying : libpsl-0.21.2-4.fc39.x86_64 42/152 Verifying : libpwquality-1.4.5-6.fc39.x86_64 43/152 Verifying : libselinux-3.5-5.fc39.x86_64 44/152 Verifying : libsemanage-3.5-4.fc39.x86_64 45/152 Verifying : libsepol-3.5-2.fc39.x86_64 46/152 Verifying : libsigsegv-2.14-5.fc39.x86_64 47/152 Verifying : libtasn1-4.19.0-3.fc39.x86_64 48/152 Verifying : libunistring-1.1-5.fc39.x86_64 49/152 Verifying : libutempter-1.2.1-10.fc39.x86_64 50/152 Verifying : libverto-0.3.2-6.fc39.x86_64 51/152 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 52/152 Verifying : libxml2-2.10.4-3.fc39.x86_64 53/152 Verifying : lua-libs-5.4.6-3.fc39.x86_64 54/152 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 55/152 Verifying : mpfr-4.2.0-3.fc39.x86_64 56/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 57/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 58/152 Verifying : openldap-2.6.6-1.fc39.x86_64 59/152 Verifying : openssl-libs-1:3.1.1-4.fc39.x86_64 60/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 61/152 Verifying : patch-2.7.6-22.fc39.x86_64 62/152 Verifying : pcre2-10.42-1.fc39.2.x86_64 63/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 64/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 65/152 Verifying : pkgconf-1.9.5-2.fc39.x86_64 66/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 67/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 68/152 Verifying : popt-1.19-3.fc39.x86_64 69/152 Verifying : python-srpm-macros-3.12-4.fc39.noarch 70/152 Verifying : sed-4.8-14.fc39.x86_64 71/152 Verifying : setup-2.14.4-1.fc39.noarch 72/152 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 73/152 Verifying : tar-2:1.35-2.fc39.x86_64 74/152 Verifying : unzip-6.0-62.fc39.x86_64 75/152 Verifying : which-2.21-40.fc39.x86_64 76/152 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 77/152 Verifying : xz-5.4.4-1.fc39.x86_64 78/152 Verifying : xz-libs-5.4.4-1.fc39.x86_64 79/152 Verifying : zip-3.0-39.fc39.x86_64 80/152 Verifying : zlib-1.2.13-4.fc39.x86_64 81/152 Verifying : alternatives-1.26-1.fc39.x86_64 82/152 Verifying : ansible-srpm-macros-1-12.fc39.noarch 83/152 Verifying : audit-libs-3.1.2-8.fc39.x86_64 84/152 Verifying : bash-5.2.26-1.fc39.x86_64 85/152 Verifying : binutils-2.40-14.fc39.x86_64 86/152 Verifying : binutils-gold-2.40-14.fc39.x86_64 87/152 Verifying : coreutils-9.3-5.fc39.x86_64 88/152 Verifying : coreutils-common-9.3-5.fc39.x86_64 89/152 Verifying : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 90/152 Verifying : curl-8.2.1-4.fc39.x86_64 91/152 Verifying : debugedit-5.0-12.fc39.x86_64 92/152 Verifying : elfutils-0.191-2.fc39.x86_64 93/152 Verifying : elfutils-debuginfod-client-0.191-2.fc39.x86_64 94/152 Verifying : elfutils-default-yama-scope-0.191-2.fc39.noarch 95/152 Verifying : elfutils-libelf-0.191-2.fc39.x86_64 96/152 Verifying : elfutils-libs-0.191-2.fc39.x86_64 97/152 Verifying : fedora-release-39-36.noarch 98/152 Verifying : fedora-release-common-39-36.noarch 99/152 Verifying : fedora-release-identity-basic-39-36.noarch 100/152 Verifying : forge-srpm-macros-0.2.0-3.fc39.noarch 101/152 Verifying : gdb-minimal-14.2-1.fc39.x86_64 102/152 Verifying : glibc-2.38-17.fc39.x86_64 103/152 Verifying : glibc-common-2.38-17.fc39.x86_64 104/152 Verifying : glibc-gconv-extra-2.38-17.fc39.x86_64 105/152 Verifying : glibc-minimal-langpack-2.38-17.fc39.x86_64 106/152 Verifying : go-srpm-macros-3.5.0-1.fc39.noarch 107/152 Verifying : keyutils-libs-1.6.3-1.fc39.x86_64 108/152 Verifying : krb5-libs-1.21.2-3.fc39.x86_64 109/152 Verifying : libacl-2.3.1-9.fc39.x86_64 110/152 Verifying : libblkid-2.39.4-1.fc39.x86_64 111/152 Verifying : libcap-2.48-9.fc39.x86_64 112/152 Verifying : libcurl-8.2.1-4.fc39.x86_64 113/152 Verifying : libeconf-0.5.2-2.fc39.x86_64 114/152 Verifying : libfdisk-2.39.4-1.fc39.x86_64 115/152 Verifying : libgcc-13.2.1-7.fc39.x86_64 116/152 Verifying : libgomp-13.2.1-7.fc39.x86_64 117/152 Verifying : libidn2-2.3.7-1.fc39.x86_64 118/152 Verifying : libmount-2.39.4-1.fc39.x86_64 119/152 Verifying : libnghttp2-1.55.1-4.fc39.x86_64 120/152 Verifying : libsmartcols-2.39.4-1.fc39.x86_64 121/152 Verifying : libssh-0.10.6-2.fc39.x86_64 122/152 Verifying : libssh-config-0.10.6-2.fc39.noarch 123/152 Verifying : libstdc++-13.2.1-7.fc39.x86_64 124/152 Verifying : libtirpc-1.3.4-1.rc3.fc39.x86_64 125/152 Verifying : libuuid-2.39.4-1.fc39.x86_64 126/152 Verifying : libzstd-1.5.6-1.fc39.x86_64 127/152 Verifying : lua-srpm-macros-1-13.fc39.noarch 128/152 Verifying : ncurses-base-6.4-7.20230520.fc39.1.noarch 129/152 Verifying : ncurses-libs-6.4-7.20230520.fc39.1.x86_64 130/152 Verifying : p11-kit-0.25.3-1.fc39.x86_64 131/152 Verifying : p11-kit-trust-0.25.3-1.fc39.x86_64 132/152 Verifying : pam-1.5.3-3.fc39.x86_64 133/152 Verifying : pam-libs-1.5.3-3.fc39.x86_64 134/152 Verifying : publicsuffix-list-dafsa-20240107-1.fc39.noarch 135/152 Verifying : pyproject-srpm-macros-1.12.0-1.fc39.noarch 136/152 Verifying : qt5-srpm-macros-5.15.12-1.fc39.noarch 137/152 Verifying : qt6-srpm-macros-6.6.2-1.fc39.noarch 138/152 Verifying : readline-8.2-6.fc39.x86_64 139/152 Verifying : redhat-rpm-config-266-1.fc39.noarch 140/152 Verifying : rpm-4.19.1.1-1.fc39.x86_64 141/152 Verifying : rpm-build-4.19.1.1-1.fc39.x86_64 142/152 Verifying : rpm-build-libs-4.19.1.1-1.fc39.x86_64 143/152 Verifying : rpm-libs-4.19.1.1-1.fc39.x86_64 144/152 Verifying : rpm-sequoia-1.6.0-1.fc39.x86_64 145/152 Verifying : rpmautospec-rpm-macros-0.6.3-1.fc39.noarch 146/152 Verifying : rust-srpm-macros-26.2-1.fc39.noarch 147/152 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 148/152 Verifying : systemd-libs-254.10-1.fc39.x86_64 149/152 Verifying : util-linux-2.39.4-1.fc39.x86_64 150/152 Verifying : util-linux-core-2.39.4-1.fc39.x86_64 151/152 Verifying : zstd-1.5.6-1.fc39.x86_64 152/152 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-3.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-17.fc39.x86_64 glibc-common-2.38-17.fc39.x86_64 glibc-gconv-extra-2.38-17.fc39.x86_64 glibc-minimal-langpack-2.38-17.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-4.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-4.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-5.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-3.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-17.fc39.x86_64 glibc-common-2.38-17.fc39.x86_64 glibc-gconv-extra-2.38-17.fc39.x86_64 glibc-minimal-langpack-2.38-17.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-4.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-4.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-x86_64-1713576205.505942/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1713576205.505942/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1713576205.505942/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1713576205.505942/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-b388fc1a/R-CRAN-spOccupancy/R-CRAN-spOccupancy.spec) Config(child) 0 minutes 17 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1713576205.505942/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm Start: build setup for R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 81 kB/s | 1.5 kB 00:00 fedora 517 kB/s | 24 kB 00:00 updates 469 kB/s | 24 kB 00:00 updates 324 kB/s | 471 kB 00:01 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-RANN x86_64 2.6.1-3.fc39.copr6279473 copr_base 53 k R-CRAN-abind noarch 1.4.5-3.fc39.copr6279306 copr_base 78 k R-CRAN-coda noarch 0.19.4.1-1.fc39.copr6978195 copr_base 360 k R-CRAN-doParallel noarch 1.0.17-1.fc39.copr6285248 copr_base 195 k R-CRAN-foreach noarch 1.5.2-1.fc39.copr6282916 copr_base 143 k R-CRAN-lme4 x86_64 1.1.35.3-1.fc39.copr7319126 copr_base 4.1 M R-CRAN-spAbundance x86_64 0.1.3-1.fc39.copr7308087 copr_base 2.1 M R-core x86_64 4.3.3-1.fc39 updates 64 M R-devel x86_64 4.3.3-1.fc39 updates 10 k Installing dependencies: R-CRAN-MASS x86_64 7.3.60.0.1-1.fc39.copr6895092 copr_base 1.2 M R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.12-1.fc39.copr6877523 copr_base 2.0 M R-CRAN-boot noarch 1.3.30-1.fc39.copr7307080 copr_base 699 k R-CRAN-codetools noarch 0.2.20-1.fc39.copr7307081 copr_base 102 k R-CRAN-iterators noarch 1.0.14-1.fc39.copr6279403 copr_base 348 k R-CRAN-lattice x86_64 0.22.6-1.fc39.copr7307082 copr_base 1.4 M R-CRAN-minqa x86_64 1.2.6-1.fc39.copr6395773 copr_base 125 k R-CRAN-nlme x86_64 3.1.164-1.fc39.copr6700968 copr_base 2.4 M R-CRAN-nloptr x86_64 2.0.3-1.fc39.copr6295244 copr_base 700 k R-core-devel x86_64 4.3.3-1.fc39 updates 94 k R-java x86_64 4.3.3-1.fc39 updates 11 k R-java-devel x86_64 4.3.3-1.fc39 updates 10 k R-littler x86_64 0.3.19-1.fc39 updates 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.11-2.fc39 updates 521 k annobin-docs noarch 12.46-1.fc39 updates 88 k annobin-plugin-gcc x86_64 12.46-1.fc39 updates 958 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-7.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.7-13.fc39 updates 267 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.3-1.fc39 updates 7.2 k expat x86_64 2.6.2-1.fc39 updates 114 k flexiblas x86_64 3.4.2-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.2-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.2-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.2-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.2-1.fc39 updates 18 k flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc39 updates 18 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel x86_64 2.14.2-6.fc39 updates 164 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-7.fc39 updates 34 M gcc-c++ x86_64 13.2.1-7.fc39 updates 13 M gcc-gfortran x86_64 13.2.1-7.fc39 updates 12 M gcc-plugin-annobin x86_64 13.2.1-7.fc39 updates 52 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.3-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.3-1.fc39 updates 596 k glibc-devel x86_64 2.38-17.fc39 updates 86 k glibc-headers-x86 noarch 2.38-17.fc39 updates 570 k gnutls x86_64 3.8.4-1.fc39 updates 1.1 M google-noto-fonts-common noarch 20240101-1.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20240101-1.fc39 updates 593 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-17-openjdk x86_64 1:17.0.9.0.9-3.fc39 updates 407 k java-17-openjdk-devel x86_64 1:17.0.9.0.9-3.fc39 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.9.0.9-3.fc39 updates 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.8.3-200.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-1.fc39 updates 121 k libRmath-devel x86_64 4.3.3-1.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.7-1.fc39 fedora 650 k libX11-common noarch 1.8.7-1.fc39 fedora 176 k libX11-devel x86_64 1.8.7-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.7-1.fc39 fedora 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.2.1-7.fc39 updates 904 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.2.1-7.fc39 updates 200 k libquadmath-devel x86_64 13.2.1-7.fc39 updates 41 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.2.1-7.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.4-1.rc3.fc39 updates 124 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-19.fc39 updates 137 k nss x86_64 3.99.0-1.fc39 updates 702 k nss-softokn x86_64 3.99.0-1.fc39 updates 419 k nss-softokn-freebl x86_64 3.99.0-1.fc39 updates 381 k nss-sysinit x86_64 3.99.0-1.fc39 updates 18 k nss-util x86_64 3.99.0-1.fc39 updates 87 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python3 x86_64 3.12.2-2.fc39 updates 27 k python3-libs x86_64 3.12.2-2.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-7.fc39 fedora 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ======================================================================================== Install 173 Packages Total size: 287 M Total download size: 20 M Installed size: 885 M Downloading Packages: [SKIPPED] R-rpm-macros-1.2.1-7.fc39.noarch.rpm: Already downloaded [SKIPPED] abattis-cantarell-vf-fonts-0.301-10.fc39.noarch.rpm: Already downloaded [SKIPPED] avahi-libs-0.8-24.fc39.x86_64.rpm: Already downloaded [SKIPPED] brotli-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] brotli-devel-1.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-devel-1.0.8-16.fc39.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.18.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.7-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] copy-jdk-configs-4.1-3.fc39.noarch.rpm: Already downloaded [SKIPPED] dbus-libs-1.14.10-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] default-fonts-core-sans-4.0-9.fc39.noarch.rpm: Already downloaded [SKIPPED] desktop-file-utils-0.26-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] freetype-devel-2.13.1-2.fc39.x86_64.rpm: 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Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 1/1 Preparing : 1/1 Installing : zlib-devel-1.2.13-4.fc39.x86_64 1/173 Installing : nspr-4.35.0-19.fc39.x86_64 2/173 Installing : libgfortran-13.2.1-7.fc39.x86_64 3/173 Installing : nss-util-3.99.0-1.fc39.x86_64 4/173 Installing : libquadmath-13.2.1-7.fc39.x86_64 5/173 Installing : xorg-x11-proto-devel-2023.2-2.fc39.noarch 6/173 Installing : libpng-2:1.6.37-15.fc39.x86_64 7/173 Installing : libmpc-1.3.1-3.fc39.x86_64 8/173 Installing : tcl-1:8.6.12-5.fc39.x86_64 9/173 Installing : libicu-73.2-2.fc39.x86_64 10/173 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 11/173 Installing : libicu-devel-73.2-2.fc39.x86_64 12/173 Installing : tcl-devel-1:8.6.12-5.fc39.x86_64 13/173 Installing : libRmath-4.3.3-1.fc39.x86_64 14/173 Installing : xz-devel-5.4.4-1.fc39.x86_64 15/173 Installing : openblas-0.3.21-6.fc39.x86_64 16/173 Installing : 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xml-common-0.6.3-61.fc39.noarch 112/173 Verifying : xorg-x11-fonts-Type1-7.5-36.fc39.noarch 113/173 Verifying : xorg-x11-proto-devel-2023.2-2.fc39.noarch 114/173 Verifying : xz-devel-5.4.4-1.fc39.x86_64 115/173 Verifying : zlib-devel-1.2.13-4.fc39.x86_64 116/173 Verifying : R-core-4.3.3-1.fc39.x86_64 117/173 Verifying : R-core-devel-4.3.3-1.fc39.x86_64 118/173 Verifying : R-devel-4.3.3-1.fc39.x86_64 119/173 Verifying : R-java-4.3.3-1.fc39.x86_64 120/173 Verifying : R-java-devel-4.3.3-1.fc39.x86_64 121/173 Verifying : R-littler-0.3.19-1.fc39.x86_64 122/173 Verifying : alsa-lib-1.2.11-2.fc39.x86_64 123/173 Verifying : annobin-docs-12.46-1.fc39.noarch 124/173 Verifying : annobin-plugin-gcc-12.46-1.fc39.x86_64 125/173 Verifying : cpp-13.2.1-7.fc39.x86_64 126/173 Verifying : crypto-policies-scripts-20231204-1.git1e3a2e4.fc 127/173 Verifying : cups-libs-1:2.4.7-13.fc39.x86_64 128/173 Verifying : emacs-filesystem-1:29.3-1.fc39.noarch 129/173 Verifying : expat-2.6.2-1.fc39.x86_64 130/173 Verifying : flexiblas-3.4.2-1.fc39.x86_64 131/173 Verifying : flexiblas-devel-3.4.2-1.fc39.x86_64 132/173 Verifying : flexiblas-netlib-3.4.2-1.fc39.x86_64 133/173 Verifying : flexiblas-netlib64-3.4.2-1.fc39.x86_64 134/173 Verifying : flexiblas-openblas-openmp-3.4.2-1.fc39.x86_64 135/173 Verifying : flexiblas-openblas-openmp64-3.4.2-1.fc39.x86_64 136/173 Verifying : fontconfig-2.14.2-6.fc39.x86_64 137/173 Verifying : fontconfig-devel-2.14.2-6.fc39.x86_64 138/173 Verifying : gcc-13.2.1-7.fc39.x86_64 139/173 Verifying : gcc-c++-13.2.1-7.fc39.x86_64 140/173 Verifying : gcc-gfortran-13.2.1-7.fc39.x86_64 141/173 Verifying : gcc-plugin-annobin-13.2.1-7.fc39.x86_64 142/173 Verifying : glib2-2.78.3-1.fc39.x86_64 143/173 Verifying : glib2-devel-2.78.3-1.fc39.x86_64 144/173 Verifying : glibc-devel-2.38-17.fc39.x86_64 145/173 Verifying : glibc-headers-x86-2.38-17.fc39.noarch 146/173 Verifying : gnutls-3.8.4-1.fc39.x86_64 147/173 Verifying : google-noto-fonts-common-20240101-1.fc39.noarch 148/173 Verifying : google-noto-sans-vf-fonts-20240101-1.fc39.noarch 149/173 Verifying : java-17-openjdk-1:17.0.9.0.9-3.fc39.x86_64 150/173 Verifying : java-17-openjdk-devel-1:17.0.9.0.9-3.fc39.x86_64 151/173 Verifying : java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86 152/173 Verifying : kernel-headers-6.8.3-200.fc39.x86_64 153/173 Verifying : libRmath-4.3.3-1.fc39.x86_64 154/173 Verifying : libRmath-devel-4.3.3-1.fc39.x86_64 155/173 Verifying : libblkid-devel-2.39.4-1.fc39.x86_64 156/173 Verifying : libgfortran-13.2.1-7.fc39.x86_64 157/173 Verifying : libmount-devel-2.39.4-1.fc39.x86_64 158/173 Verifying : libquadmath-13.2.1-7.fc39.x86_64 159/173 Verifying : libquadmath-devel-13.2.1-7.fc39.x86_64 160/173 Verifying : libstdc++-devel-13.2.1-7.fc39.x86_64 161/173 Verifying : libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 162/173 Verifying : nspr-4.35.0-19.fc39.x86_64 163/173 Verifying : nss-3.99.0-1.fc39.x86_64 164/173 Verifying : nss-softokn-3.99.0-1.fc39.x86_64 165/173 Verifying : nss-softokn-freebl-3.99.0-1.fc39.x86_64 166/173 Verifying : nss-sysinit-3.99.0-1.fc39.x86_64 167/173 Verifying : nss-util-3.99.0-1.fc39.x86_64 168/173 Verifying : python3-3.12.2-2.fc39.x86_64 169/173 Verifying : python3-libs-3.12.2-2.fc39.x86_64 170/173 Verifying : sysprof-capture-devel-45.1-1.fc39.x86_64 171/173 Verifying : tzdata-2024a-2.fc39.noarch 172/173 Verifying : tzdata-java-2024a-2.fc39.noarch 173/173 Installed products updated. Installed: R-CRAN-MASS-7.3.60.0.1-1.fc39.copr6895092.x86_64 R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-RANN-2.6.1-3.fc39.copr6279473.x86_64 R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523.x86_64 R-CRAN-abind-1.4.5-3.fc39.copr6279306.noarch R-CRAN-boot-1.3.30-1.fc39.copr7307080.noarch R-CRAN-coda-0.19.4.1-1.fc39.copr6978195.noarch R-CRAN-codetools-0.2.20-1.fc39.copr7307081.noarch R-CRAN-doParallel-1.0.17-1.fc39.copr6285248.noarch R-CRAN-foreach-1.5.2-1.fc39.copr6282916.noarch R-CRAN-iterators-1.0.14-1.fc39.copr6279403.noarch R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 R-CRAN-lme4-1.1.35.3-1.fc39.copr7319126.x86_64 R-CRAN-minqa-1.2.6-1.fc39.copr6395773.x86_64 R-CRAN-nlme-3.1.164-1.fc39.copr6700968.x86_64 R-CRAN-nloptr-2.0.3-1.fc39.copr6295244.x86_64 R-CRAN-spAbundance-0.1.3-1.fc39.copr7308087.x86_64 R-core-4.3.3-1.fc39.x86_64 R-core-devel-4.3.3-1.fc39.x86_64 R-devel-4.3.3-1.fc39.x86_64 R-java-4.3.3-1.fc39.x86_64 R-java-devel-4.3.3-1.fc39.x86_64 R-littler-0.3.19-1.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.11-2.fc39.x86_64 annobin-docs-12.46-1.fc39.noarch annobin-plugin-gcc-12.46-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.27.7-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-7.fc39.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc39.noarch cups-libs-1:2.4.7-13.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.3-1.fc39.noarch expat-2.6.2-1.fc39.x86_64 flexiblas-3.4.2-1.fc39.x86_64 flexiblas-devel-3.4.2-1.fc39.x86_64 flexiblas-netlib-3.4.2-1.fc39.x86_64 flexiblas-netlib64-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp64-3.4.2-1.fc39.x86_64 fontconfig-2.14.2-6.fc39.x86_64 fontconfig-devel-2.14.2-6.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-7.fc39.x86_64 gcc-c++-13.2.1-7.fc39.x86_64 gcc-gfortran-13.2.1-7.fc39.x86_64 gcc-plugin-annobin-13.2.1-7.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.3-1.fc39.x86_64 glib2-devel-2.78.3-1.fc39.x86_64 glibc-devel-2.38-17.fc39.x86_64 glibc-headers-x86-2.38-17.fc39.noarch gnutls-3.8.4-1.fc39.x86_64 google-noto-fonts-common-20240101-1.fc39.noarch google-noto-sans-vf-fonts-20240101-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-17-openjdk-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-devel-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.8.3-200.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.3-1.fc39.x86_64 libRmath-devel-4.3.3-1.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.7-1.fc39.x86_64 libX11-common-1.8.7-1.fc39.noarch libX11-devel-1.8.7-1.fc39.x86_64 libX11-xcb-1.8.7-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.4-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.2.1-7.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.4-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.2.1-7.fc39.x86_64 libquadmath-devel-13.2.1-7.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.2.1-7.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc39.x86_64 libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.19-4.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-19.fc39.x86_64 nss-3.99.0-1.fc39.x86_64 nss-softokn-3.99.0-1.fc39.x86_64 nss-softokn-freebl-3.99.0-1.fc39.x86_64 nss-sysinit-3.99.0-1.fc39.x86_64 nss-util-3.99.0-1.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.2-2.fc39.x86_64 python3-libs-3.12.2-2.fc39.x86_64 python3-setuptools-67.7.2-7.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm Start: rpmbuild R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0KAQBd + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf spOccupancy + /usr/bin/mkdir -p spOccupancy + cd spOccupancy + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/spOccupancy_0.7.6.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/spOccupancy-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/spOccupancy-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d spOccupancy/src ']' + find spOccupancy/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d spOccupancy/src ']' + find spOccupancy/src/Makevars -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bTzoiG + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd spOccupancy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1mWUx1 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd spOccupancy + mkdir -p /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/usr/local/lib/R/library spOccupancy * installing *source* package ‘spOccupancy’ ... ** package ‘spOccupancy’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c PGOcc.cpp -o PGOcc.o PGOcc.cpp: In function ‘PGOcc’: PGOcc.cpp:573:34: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 573 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:183:10: note: ‘sigmaSqPSamples_r’ was declared here 183 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:575:34: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 575 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:184:10: note: ‘alphaStarSamples_r’ was declared here 184 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ PGOcc.cpp:567:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 567 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:192:10: note: ‘sigmaSqPsiSamples_r’ was declared here 192 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:569:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 569 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:193:10: note: ‘betaStarSamples_r’ was declared here 193 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:650:42: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 650 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ PGOcc.cpp:212:12: note: ‘tmp_0’ was declared here 212 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c idist.cpp -o idist.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c init.cpp -o init.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c intMsPGOcc.cpp -o intMsPGOcc.o intMsPGOcc.cpp: In function ‘intMsPGOcc’: intMsPGOcc.cpp:697:61: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 697 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:238:10: note: ‘sigmaSqPsiSamples_r’ was declared here 238 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:698:60: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 698 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:239:10: note: ‘betaStarSamples_r’ was declared here 239 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:780:42: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 780 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ intMsPGOcc.cpp:164:12: note: ‘tmp_0’ was declared here 164 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c intPGOcc.cpp -o intPGOcc.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lfJSDM.cpp -o lfJSDM.o lfJSDM.cpp: In function ‘lfJSDM’: lfJSDM.cpp:619:61: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 619 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:218:10: note: ‘sigmaSqPsiSamples_r’ was declared here 218 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:620:60: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 620 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:219:10: note: ‘betaStarSamples_r’ was declared here 219 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c lfMsPGOcc.cpp -o lfMsPGOcc.o lfMsPGOcc.cpp: In function ‘lfMsPGOcc’: lfMsPGOcc.cpp:926:59: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 926 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:280:10: note: ‘sigmaSqPSamples_r’ was declared here 280 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:927:61: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 927 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:281:10: note: ‘alphaStarSamples_r’ was declared here 281 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:930:61: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 930 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:289:10: note: ‘sigmaSqPsiSamples_r’ was declared here 289 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:931:60: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 931 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:290:10: note: ‘betaStarSamples_r’ was declared here 290 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:1023:42: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1023 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ lfMsPGOcc.cpp:166:12: note: ‘tmp_0’ was declared here 166 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mkSpCov.cpp -o mkSpCov.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c msPGOcc.cpp -o msPGOcc.o msPGOcc.cpp: In function ‘msPGOcc’: msPGOcc.cpp:718:59: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 718 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:241:10: note: ‘sigmaSqPSamples_r’ was declared here 241 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:719:61: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 719 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:242:10: note: ‘alphaStarSamples_r’ was declared here 242 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msPGOcc.cpp:722:61: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 722 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:250:10: note: ‘sigmaSqPsiSamples_r’ was declared here 250 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:723:60: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 723 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:251:10: note: ‘betaStarSamples_r’ was declared here 251 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:804:42: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 804 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ msPGOcc.cpp:156:12: note: ‘tmp_0’ was declared here 156 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c nn.cpp -o nn.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c postHocLM.cpp -o postHocLM.o postHocLM.cpp: In function ‘postHocLM’: postHocLM.cpp:292:26: warning: ‘sigmaSqSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 292 | &REAL(sigmaSqSamples_r)[s*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~ postHocLM.cpp:114:10: note: ‘sigmaSqSamples_r’ was declared here 114 | SEXP sigmaSqSamples_r; | ^~~~~~~~~~~~~~~~ postHocLM.cpp:294:26: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 294 | &REAL(betaStarSamples_r)[s*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ postHocLM.cpp:115:10: note: ‘betaStarSamples_r’ was declared here 115 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rpg.cpp -o rpg.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o sfJSDMNNGP.cpp: In function ‘sfJSDMNNGP’: sfJSDMNNGP.cpp:978:59: warning: ‘betaCommSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 978 | F77_NAME(dcopy)(&pOcc, betaComm, &inc, &REAL(betaCommSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:287:10: note: ‘betaCommSamples_r’ was declared here 287 | SEXP betaCommSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:981:60: warning: ‘tauSqBetaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 981 | F77_NAME(dcopy)(&pOcc, tauSqBeta, &inc, &REAL(tauSqBetaSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:292:10: note: ‘tauSqBetaSamples_r’ was declared here 292 | SEXP tauSqBetaSamples_r; | ^~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:984:56: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 984 | F77_NAME(dcopy)(&pOccN, beta, &inc, &REAL(betaSamples_r)[sPost*pOccN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:298:10: note: ‘betaSamples_r’ was declared here 298 | SEXP betaSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:993:50: warning: ‘zSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 993 | F77_NAME(dcopy)(&JN, z, &inc, &REAL(zSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:305:10: note: ‘zSamples_r’ was declared here 305 | SEXP zSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:990:52: warning: ‘psiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 990 | F77_NAME(dcopy)(&JN, psi, &inc, &REAL(psiSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~ sfJSDMNNGP.cpp:310:10: note: ‘psiSamples_r’ was declared here 310 | SEXP psiSamples_r; | ^~~~~~~~~~~~ sfJSDMNNGP.cpp:987:55: warning: ‘lambdaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 987 | F77_NAME(dcopy)(&Nq, lambda, &inc, &REAL(lambdaSamples_r)[sPost*Nq], &inc); | ~~~~^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:316:10: note: ‘lambdaSamples_r’ was declared here 316 | SEXP lambdaSamples_r; | ^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:996:50: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 996 | F77_NAME(dcopy)(&Jq, w, &inc, &REAL(wSamples_r)[sPost*Jq], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:321:10: note: ‘wSamples_r’ was declared here 321 | SEXP wSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:1007:65: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1007 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:327:10: note: ‘sigmaSqPsiSamples_r’ was declared here 327 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1010:64: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1010 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:328:10: note: ‘betaStarSamples_r’ was declared here 328 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1014:54: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1014 | F77_NAME(dcopy)(&JN, yWAIC, &inc, &REAL(likeSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:340:10: note: ‘likeSamples_r’ was declared here 340 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:1002:79: warning: ‘thetaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1002 | F77_NAME(dcopy)(&nThetaqSave, &theta[phiIndx * q], &inc, &REAL(thetaSamples_r)[sPost*nThetaqSave], &inc); | ~~~~^~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:429:10: note: ‘thetaSamples_r’ was declared here 429 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o sfMsPGOccNNGP.cpp: In function ‘sfMsPGOccNNGP’: sfMsPGOccNNGP.cpp:1251:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1251 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:367:10: note: ‘sigmaSqPSamples_r’ was declared here 367 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1252:63: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1252 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:368:10: note: ‘alphaStarSamples_r’ was declared here 368 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1255:63: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1255 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:376:10: note: ‘sigmaSqPsiSamples_r’ was declared here 376 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1256:62: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1256 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:377:10: note: ‘betaStarSamples_r’ was declared here 377 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1374:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1374 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:242:12: note: ‘tmp_0’ was declared here 242 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o sfMsPGOccNNGPPredict.cpp: In function ‘sfMsPGOccNNGPPredict’: sfMsPGOccNNGPPredict.cpp:144:39: warning: ‘nuIndx’ may be used uninitialized [-Wmaybe-uninitialized] 144 | if(theta[s*nThetaq + nuIndx * q + ll] > nuMax[ll]){ | ~~~~~~~^~~ sfMsPGOccNNGPPredict.cpp:109:26: note: ‘nuIndx’ was declared here 109 | int nTheta, phiIndx, nuIndx, sigmaSqIndx; | ^~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spIntPGOcc.cpp -o spIntPGOcc.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o spIntPGOccNNGP.cpp: In function ‘spIntPGOccNNGP’: spIntPGOccNNGP.cpp:322:12: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 322 | double logDet; | ^~~~~~ spIntPGOccNNGP.cpp:330:12: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 330 | double a, v, b, e, mu, var, aij; | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spMsPGOcc.cpp -o spMsPGOcc.o spMsPGOcc.cpp: In function ‘spMsPGOcc’: spMsPGOcc.cpp:1041:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1041 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:291:10: note: ‘sigmaSqPSamples_r’ was declared here 291 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1043:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1043 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:292:10: note: ‘alphaStarSamples_r’ was declared here 292 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1047:36: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1047 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:300:10: note: ‘sigmaSqPsiSamples_r’ was declared here 300 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1049:36: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1049 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:301:10: note: ‘betaStarSamples_r’ was declared here 301 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1168:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1168 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:184:12: note: ‘tmp_0’ was declared here 184 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o spMsPGOccNNGP.cpp: In function ‘spMsPGOccNNGP’: spMsPGOccNNGP.cpp:1079:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1079 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:338:10: note: ‘sigmaSqPSamples_r’ was declared here 338 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1081:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1081 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:339:10: note: ‘alphaStarSamples_r’ was declared here 339 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1085:36: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1085 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:347:10: note: ‘sigmaSqPsiSamples_r’ was declared here 347 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1087:36: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1087 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:348:10: note: ‘betaStarSamples_r’ was declared here 348 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:498:12: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 498 | double logDet; | ^~~~~~ spMsPGOccNNGP.cpp:467:12: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 467 | double a, v, b, e, mu, var, aij; | ^ spMsPGOccNNGP.cpp:1207:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1207 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:233:12: note: ‘tmp_0’ was declared here 233 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spPGOcc.cpp -o spPGOcc.o spPGOcc.cpp: In function ‘spPGOcc’: spPGOcc.cpp:807:34: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 807 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:208:10: note: ‘sigmaSqPSamples_r’ was declared here 208 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:809:34: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 809 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:209:10: note: ‘alphaStarSamples_r’ was declared here 209 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOcc.cpp:801:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 801 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:217:10: note: ‘sigmaSqPsiSamples_r’ was declared here 217 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:803:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 803 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:218:10: note: ‘betaStarSamples_r’ was declared here 218 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:918:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 918 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:238:12: note: ‘tmp_0’ was declared here 238 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spPGOccNNGP.cpp -o spPGOccNNGP.o spPGOccNNGP.cpp: In function ‘spPGOccNNGP’: spPGOccNNGP.cpp:887:34: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 887 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:262:10: note: ‘sigmaSqPSamples_r’ was declared here 262 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:889:34: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 889 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:263:10: note: ‘alphaStarSamples_r’ was declared here 263 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:881:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 881 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:271:10: note: ‘sigmaSqPsiSamples_r’ was declared here 271 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:883:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 883 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:272:10: note: ‘betaStarSamples_r’ was declared here 272 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:389:12: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 389 | double logDet; | ^~~~~~ spPGOccNNGP.cpp:400:12: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 400 | double a, v, b, e, mu, var, aij; | ^ spPGOccNNGP.cpp:998:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 998 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:292:12: note: ‘tmp_0’ was declared here 292 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c spPGOccPredict.cpp -o spPGOccPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o stMsPGOccNNGP.cpp: In function ‘stMsPGOccNNGP’: stMsPGOccNNGP.cpp:1510:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1510 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:393:10: note: ‘sigmaSqPSamples_r’ was declared here 393 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1511:63: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1511 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:394:10: note: ‘alphaStarSamples_r’ was declared here 394 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1514:63: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1514 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:402:10: note: ‘sigmaSqPsiSamples_r’ was declared here 402 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1515:62: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1515 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:403:10: note: ‘betaStarSamples_r’ was declared here 403 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1640:21: warning: ‘etaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1640 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:417:10: note: ‘etaSamples_r’ was declared here 417 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stMsPGOccNNGP.cpp:1641:21: warning: ‘ar1ThetaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1641 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:418:10: note: ‘ar1ThetaSamples_r’ was declared here 418 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1664:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1664 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:257:12: note: ‘tmp_0’ was declared here 257 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stPGOccNNGP.cpp -o stPGOccNNGP.o stPGOccNNGP.cpp: In function ‘stPGOccNNGP’: stPGOccNNGP.cpp:1224:21: warning: ‘etaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1224 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:291:10: note: ‘etaSamples_r’ was declared here 291 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:1118:34: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1118 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:300:10: note: ‘sigmaSqPSamples_r’ was declared here 300 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1120:34: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1120 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:301:10: note: ‘alphaStarSamples_r’ was declared here 301 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1112:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1112 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:309:10: note: ‘sigmaSqPsiSamples_r’ was declared here 309 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1114:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1114 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:310:10: note: ‘betaStarSamples_r’ was declared here 310 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:481:13: warning: ‘sigmaSqTIndx’ may be used uninitialized [-Wmaybe-uninitialized] 481 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5]; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:427:47: note: ‘sigmaSqTIndx’ was declared here 427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:482:13: warning: ‘rhoIndx’ may be used uninitialized [-Wmaybe-uninitialized] 482 | theta[rhoIndx] = REAL(ar1Vals_r)[4]; | ^~~~~~~ stPGOccNNGP.cpp:427:61: note: ‘rhoIndx’ was declared here 427 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ stPGOccNNGP.cpp:513:12: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 513 | double logDet; | ^~~~~~ stPGOccNNGP.cpp:445:12: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 445 | double a, v, b, e, mu, var, aij; | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o svcMsPGOccNNGP.cpp: In function ‘svcMsPGOccNNGP’: svcMsPGOccNNGP.cpp:1327:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1327 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:373:10: note: ‘sigmaSqPSamples_r’ was declared here 373 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1328:63: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1328 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:374:10: note: ‘alphaStarSamples_r’ was declared here 374 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1331:63: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1331 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:382:10: note: ‘sigmaSqPsiSamples_r’ was declared here 382 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1332:62: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1332 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:383:10: note: ‘betaStarSamples_r’ was declared here 383 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1451:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1451 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:249:12: note: ‘tmp_0’ was declared here 249 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o svcPGBinomNNGP.cpp: In function ‘svcPGBinomNNGP’: svcPGBinomNNGP.cpp:730:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 730 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:240:10: note: ‘sigmaSqPsiSamples_r’ was declared here 240 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:732:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 732 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:241:10: note: ‘betaStarSamples_r’ was declared here 241 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:582:9: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGBinomNNGP.cpp:324:12: note: ‘logDet’ was declared here 324 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o svcPGOccNNGP.cpp: In function ‘svcPGOccNNGP’: svcPGOccNNGP.cpp:982:34: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 982 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:278:10: note: ‘sigmaSqPSamples_r’ was declared here 278 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:984:34: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 984 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:279:10: note: ‘alphaStarSamples_r’ was declared here 279 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:976:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 976 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:287:10: note: ‘sigmaSqPsiSamples_r’ was declared here 287 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:978:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 978 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:288:10: note: ‘betaStarSamples_r’ was declared here 288 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:794:9: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 794 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGOccNNGP.cpp:408:12: note: ‘logDet’ was declared here 408 | double logDet; | ^~~~~~ svcPGOccNNGP.cpp:1096:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1096 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:308:12: note: ‘tmp_0’ was declared here 308 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o svcTMsPGOccNNGP.cpp: In function ‘svcTMsPGOccNNGP’: svcTMsPGOccNNGP.cpp:1632:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1632 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:411:10: note: ‘sigmaSqPSamples_r’ was declared here 411 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1633:63: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1633 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:412:10: note: ‘alphaStarSamples_r’ was declared here 412 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1636:63: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1636 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:420:10: note: ‘sigmaSqPsiSamples_r’ was declared here 420 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1637:62: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1637 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:421:10: note: ‘betaStarSamples_r’ was declared here 421 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1766:21: warning: ‘etaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1766 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:435:10: note: ‘etaSamples_r’ was declared here 435 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1767:21: warning: ‘ar1ThetaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1767 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:436:10: note: ‘ar1ThetaSamples_r’ was declared here 436 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1790:21: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1790 | SET_VECTOR_ELT(resultName_r, tmp_0, Rf_mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:271:12: note: ‘tmp_0’ was declared here 271 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o svcTPGBinomNNGP.cpp: In function ‘svcTPGBinomNNGP’: svcTPGBinomNNGP.cpp:952:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 952 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:261:10: note: ‘sigmaSqPsiSamples_r’ was declared here 261 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:954:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 954 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:262:10: note: ‘betaStarSamples_r’ was declared here 262 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:1050:21: warning: ‘etaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1050 | SET_VECTOR_ELT(result_r, tmp_0, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:274:10: note: ‘etaSamples_r’ was declared here 274 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGBinomNNGP.cpp:681:9: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 681 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGBinomNNGP.cpp:369:12: note: ‘logDet’ was declared here 369 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o svcTPGOccNNGP.cpp: In function ‘svcTPGOccNNGP’: svcTPGOccNNGP.cpp:1330:21: warning: ‘etaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1330 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:300:10: note: ‘etaSamples_r’ was declared here 300 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:1205:34: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1205 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:309:10: note: ‘sigmaSqPSamples_r’ was declared here 309 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1207:34: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1207 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:310:10: note: ‘alphaStarSamples_r’ was declared here 310 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1199:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1199 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:318:10: note: ‘sigmaSqPsiSamples_r’ was declared here 318 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1201:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1201 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:319:10: note: ‘betaStarSamples_r’ was declared here 319 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:518:13: warning: ‘sigmaSqTIndx’ may be used uninitialized [-Wmaybe-uninitialized] 518 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5]; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:439:47: note: ‘sigmaSqTIndx’ was declared here 439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:519:13: warning: ‘rhoIndx’ may be used uninitialized [-Wmaybe-uninitialized] 519 | theta[rhoIndx] = REAL(ar1Vals_r)[4]; | ^~~~~~~ svcTPGOccNNGP.cpp:439:61: note: ‘rhoIndx’ was declared here 439 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ svcTPGOccNNGP.cpp:894:9: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 894 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGOccNNGP.cpp:457:12: note: ‘logDet’ was declared here 457 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tMsPGOcc.cpp -o tMsPGOcc.o tMsPGOcc.cpp: In function ‘tMsPGOcc’: tMsPGOcc.cpp:1146:21: warning: ‘etaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1146 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:278:10: note: ‘etaSamples_r’ was declared here 278 | SEXP etaSamples_r; | ^~~~~~~~~~~~ tMsPGOcc.cpp:1147:21: warning: ‘thetaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1147 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:279:10: note: ‘thetaSamples_r’ was declared here 279 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ tMsPGOcc.cpp:1033:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1033 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:302:10: note: ‘sigmaSqPSamples_r’ was declared here 302 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1034:63: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:303:10: note: ‘alphaStarSamples_r’ was declared here 303 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1037:63: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1037 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:311:10: note: ‘sigmaSqPsiSamples_r’ was declared here 311 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1038:62: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1038 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:312:10: note: ‘betaStarSamples_r’ was declared here 312 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1168:42: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1168 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, Rf_mkChar("beta.star.samples")); | ~~~~~~^~~ tMsPGOcc.cpp:183:12: note: ‘tmp_0’ was declared here 183 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c tPGOcc.cpp -o tPGOcc.o tPGOcc.cpp: In function ‘tPGOcc’: tPGOcc.cpp:912:21: warning: ‘etaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 912 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:207:10: note: ‘etaSamples_r’ was declared here 207 | SEXP etaSamples_r; | ^~~~~~~~~~~~ tPGOcc.cpp:819:34: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 819 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:216:10: note: ‘sigmaSqPSamples_r’ was declared here 216 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:821:34: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 821 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:217:10: note: ‘alphaStarSamples_r’ was declared here 217 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tPGOcc.cpp:813:34: warning: ‘sigmaSqPsiSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 813 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:225:10: note: ‘sigmaSqPsiSamples_r’ was declared here 225 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:815:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 815 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:226:10: note: ‘betaStarSamples_r’ was declared here 226 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:913:21: warning: ‘thetaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 913 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:350:10: note: ‘thetaSamples_r’ was declared here 350 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c util.cpp -o util.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o spOccupancy.so PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tMsPGOcc.o tPGOcc.o util.o -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/usr/local/lib/R/library/00LOCK-spOccupancy/00new/spOccupancy/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘spOccupancy’ finding HTML links ... done PGOcc html fitted.PGOcc html fitted.intPGOcc html fitted.lfJSDM html fitted.lfMsPGOcc html fitted.msPGOcc html fitted.sfJSDM html fitted.sfMsPGOcc html fitted.spIntPGOcc html fitted.spMsPGOcc html fitted.spPGOcc html fitted.stMsPGOcc html fitted.stPGOcc html fitted.svcMsPGOcc html fitted.svcPGBinom html fitted.svcPGOcc html fitted.svcTMsPGOcc html fitted.svcTPGBinom html fitted.svcTPGOcc html fitted.tMsPGOcc html fitted.tPGOcc html getSVCSamples html hbef2015.rda html hbefElev.rda html hbefTrends.rda html intMsPGOcc html intPGOcc html lfJSDM html lfMsPGOcc html msPGOcc html neon2015.rda html postHocLM html ppcOcc html predict.PGOcc html predict.intMsPGOcc html predict.intPGOcc html predict.lfJSDM html predict.lfMsPGOcc html predict.msPGOcc html predict.sfJSDM html predict.sfMsPGOcc html predict.spIntPGOcc html predict.spMsPGOcc html predict.spPGOcc html predict.stMsPGOcc html predict.stPGOcc html predict.svcMsPGOcc html predict.svcPGBinom html predict.svcPGOcc html predict.svcTMsPGOcc html predict.svcTPGBinom html predict.svcTPGOcc html predict.tMsPGOcc html predict.tPGOcc html sfJSDM html sfMsPGOcc html simBinom html simIntMsOcc html simIntOcc html simMsOcc html simOcc html simTBinom html simTMsOcc html simTOcc html spIntPGOcc html spMsPGOcc html spOccupancy-package html spPGOcc html stMsPGOcc html stPGOcc html summary.PGOcc html summary.intMsPGOcc html summary.intPGOcc html summary.lfJSDM html summary.lfMsPGOcc html summary.msPGOcc html summary.postHocLM html summary.ppcOcc html summary.sfJSDM html summary.sfMsPGOcc html summary.spIntPGOcc html summary.spMsPGOcc html summary.spPGOcc html summary.stMsPGOcc html summary.stPGOcc html summary.svcMsPGOcc html summary.svcPGBinom html summary.svcPGOcc html summary.svcTMsPGOcc html summary.svcTPGBinom html summary.svcTPGOcc html summary.tMsPGOcc html summary.tPGOcc html svcMsPGOcc html svcPGBinom html svcPGOcc html svcTMsPGOcc html svcTPGBinom html svcTPGOcc html tMsPGOcc html tPGOcc html updateMCMC html waicOcc html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spOccupancy) + test -d spOccupancy/src + cd spOccupancy/src + rm -f PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tMsPGOcc.o tPGOcc.o util.o spOccupancy.so + rm -f /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.7.6-1.fc39.copr7329755 --unique-debug-suffix -0.7.6-1.fc39.copr7329755.x86_64 --unique-debug-src-base R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/spOccupancy find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 2581 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/tPGOcc.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/svcTPGOccNNGP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/svcTPGBinomNNGP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/spPGOccNNGP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/spPGOcc.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/spIntPGOccNNGP.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/spIntPGOcc.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/postHocLM.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/intPGOcc.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/idist.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64/spOccupancy/src/PGOcc.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 Provides: R-CRAN-spOccupancy = 0.7.6-1.fc39.copr7329755 R-CRAN-spOccupancy(x86-64) = 0.7.6-1.fc39.copr7329755 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-spOccupancy-debugsource-0.7.6-1.fc39.copr7329755.x86_64 Provides: R-CRAN-spOccupancy-debugsource = 0.7.6-1.fc39.copr7329755 R-CRAN-spOccupancy-debugsource(x86-64) = 0.7.6-1.fc39.copr7329755 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-spOccupancy-debuginfo-0.7.6-1.fc39.copr7329755.x86_64 Provides: R-CRAN-spOccupancy-debuginfo = 0.7.6-1.fc39.copr7329755 R-CRAN-spOccupancy-debuginfo(x86-64) = 0.7.6-1.fc39.copr7329755 debuginfo(build-id) = fd92a3bb24b53854a5ed281fcadcf51db41b090d Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-spOccupancy-debugsource(x86-64) = 0.7.6-1.fc39.copr7329755 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-spOccupancy-debugsource-0.7.6-1.fc39.copr7329755.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-spOccupancy-debuginfo-0.7.6-1.fc39.copr7329755.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.z3mMAs + umask 022 + cd /builddir/build/BUILD + cd spOccupancy + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.NOexBr + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/spOccupancy-SPECPARTS + rm -rf spOccupancy spOccupancy.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm Finish: build phase for R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1713576205.505942/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-x86_64-1713576205.505942/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1713576205.505942/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-spOccupancy-0.7.6-1.fc39.copr7329755.src.rpm) Config(child) 1 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-spOccupancy-debugsource", "epoch": null, "version": "0.7.6", "release": "1.fc39.copr7329755", "arch": "x86_64" }, { "name": "R-CRAN-spOccupancy-debuginfo", "epoch": null, "version": "0.7.6", "release": "1.fc39.copr7329755", "arch": "x86_64" }, { "name": "R-CRAN-spOccupancy", "epoch": null, "version": "0.7.6", "release": "1.fc39.copr7329755", "arch": "src" }, { "name": "R-CRAN-spOccupancy", "epoch": null, "version": "0.7.6", "release": "1.fc39.copr7329755", "arch": "x86_64" } ] } RPMResults finished