mrbayes.mcmc {ips} | R Documentation |
Set Markov chain Monte Carlo (MCMC) parameters for mrbayes
.
mrbayes.mcmc(...)
... |
arguments in |
a list containing a subset (including the empty and the full set) of model parameters.
"NUMERIC"
"NUMERIC"
"NUMERIC"
"NUMERIC"
"NUMERIC"
"NUMERIC"
"NUMERIC"
"NUMERIC"
"yes"
or "no"
"NUMERIC"
"yes"
or "no"
"NUMERIC"
"avgstddev"
or "maxstddev"
"NUMERIC"
"yes"
or "no"
"yes"
or "no"
"yes"
or "no"
"NUMERIC"
"NUMERIC"
"yes"
or "no"
"NUMERIC"
"yes"
or "no"
"yes"
or "no"
"NUMERIC"
"current"
or "reset"
"current"
, "random"
, or "parsimony"
"NUMERIC"
"yes"
or "no"
"yes"
or "no"
"yes"
or "no"
"yes"
or "no"
"NUMERIC"
The parameters reweight and filename cannot be set via mrbayes.mcmc
.
Christoph Heibl
J.P. Huelsenbeck & Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
Ronquist F. & J.P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Biometrics 19: 1572-1574.
MrBayes website: https://mrbayes.sourceforge.net/.
mrbayes.lset
to set model parameters, mrbayes.prset
to set prior distributions, and mrbayes
to run MrBayes locally or prepare input files for a computer cluster.
mrbayes.mcmc()