VariableFeatures-StdAssay {SeuratObject} | R Documentation |
Get and set variable feature information for an Assay
object.
HVFInfo
and VariableFeatures
utilize generally variable
features, while SVFInfo
and SpatiallyVariableFeatures
are
restricted to spatially variable features
## S3 method for class 'StdAssay'
HVFInfo(object, method = NULL, status = FALSE, layer = NULL, strip = TRUE, ...)
## S3 method for class 'StdAssay'
VariableFeatures(
object,
method = NULL,
layer = NA,
simplify = TRUE,
nfeatures = Inf,
selection.method = deprecated(),
...
)
## S3 replacement method for class 'StdAssay'
VariableFeatures(object, method = "custom", layer = NULL, ...) <- value
object |
An object |
method |
Which method to pull. For
For
|
status |
Add variable status to the resulting data frame |
layer |
Layer to pull variable features for |
strip |
Remove method/layer identifiers from highly variable data frame |
... |
Arguments passed to other methods |
simplify |
When pulling for multiple layers, combine into a single vector and select a common set of variable features for all layers |
nfeatures |
Maximum number of features to select when simplifying |
selection.method |
|
value |
A character vector of variable features |
HVFInfo
: A data frame with feature means, dispersion, and
scaled dispersion
VariableFeatures
: a vector of the variable features
SVFInfo
: a data frame with the spatially variable features
SpatiallyVariableFeatures
: a character vector of the spatially
variable features