Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10c' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7428030-fedora-39-x86_64 --chroot fedora-39-x86_64 Version: 0.72 PID: 10477 Logging PID: 10478 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 7428030, 'buildroot_pkgs': [], 'chroot': 'fedora-39-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '1dbe4de3afbe67b5ef44c45e2471ee7dda834e2c', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-SeuratObject', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-SeuratObject', 'package_version': '5.0.2-1.copr7428030', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-39-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'iucar', 'tags': [], 'task_id': '7428030-fedora-39-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-SeuratObject /var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-SeuratObject', '/var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject'... Running: git checkout 1dbe4de3afbe67b5ef44c45e2471ee7dda834e2c -- cmd: ['git', 'checkout', '1dbe4de3afbe67b5ef44c45e2471ee7dda834e2c', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject rc: 0 stdout: stderr: Note: switching to '1dbe4de3afbe67b5ef44c45e2471ee7dda834e2c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 1dbe4de automatic import of R-CRAN-SeuratObject Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading SeuratObject_5.0.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o SeuratObject_5.0.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-SeuratObject/SeuratObject_5.0.2.tar.gz/md5/02b308617e1f85ed1bc2ea36a3d6a946/SeuratObject_5.0.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 732k 100 732k 0 0 8352k 0 --:--:-- --:--:-- --:--:-- 8416k INFO: Reading stdout from command: md5sum SeuratObject_5.0.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject/R-CRAN-SeuratObject.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1715218004.743702 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject/R-CRAN-SeuratObject.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1715218004.743702 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject/R-CRAN-SeuratObject.spec) Config(fedora-39-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1715218004.743702/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 18 MB/s | 26 MB 00:01 fedora 4.8 MB/s | 89 MB 00:18 updates 21 MB/s | 35 MB 00:01 Last metadata expiration check: 0:00:05 ago on Thu May 9 01:27:31 2024. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.26-1.fc39 updates 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-5.fc39 updates 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 39-36 updates 19 k findutils x86_64 1:4.9.0-5.fc39 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38-18.fc39 updates 73 k grep x86_64 3.11-3.fc39 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 266-1.fc39 updates 78 k rpm-build x86_64 4.19.1.1-1.fc39 updates 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-2.fc39 updates 1.3 M tar x86_64 2:1.35-2.fc39 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.4-1.fc39 updates 1.2 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.26-1.fc39 updates 39 k ansible-srpm-macros noarch 1-12.fc39 updates 21 k audit-libs x86_64 3.1.2-8.fc39 updates 117 k authselect x86_64 1.4.3-1.fc39 fedora 149 k authselect-libs x86_64 1.4.3-1.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.40-14.fc39 updates 5.6 M binutils-gold x86_64 2.40-14.fc39 updates 795 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k coreutils-common x86_64 9.3-5.fc39 updates 2.1 M cracklib x86_64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20231204-1.git1e3a2e4.fc39 updates 100 k curl x86_64 8.2.1-5.fc39 updates 344 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-12.fc39 updates 79 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.191-2.fc39 updates 559 k elfutils-debuginfod-client x86_64 0.191-2.fc39 updates 38 k elfutils-default-yama-scope noarch 0.191-2.fc39 updates 13 k elfutils-libelf x86_64 0.191-2.fc39 updates 209 k elfutils-libs x86_64 0.191-2.fc39 updates 263 k fedora-gpg-keys noarch 39-1 fedora 130 k fedora-release noarch 39-36 updates 8.6 k fedora-release-identity-basic noarch 39-36 updates 9.4 k fedora-repos noarch 39-1 fedora 9.3 k file x86_64 5.44-5.fc39 fedora 49 k file-libs x86_64 5.44-5.fc39 fedora 729 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.3.1-1.fc39 updates 19 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 14.2-1.fc39 updates 4.3 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38-18.fc39 updates 2.2 M glibc-common x86_64 2.38-18.fc39 updates 353 k glibc-gconv-extra x86_64 2.38-18.fc39 updates 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.5.0-1.fc39 updates 28 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.3-1.fc39 updates 31 k krb5-libs x86_64 1.21.2-3.fc39 updates 765 k libacl x86_64 2.3.1-9.fc39 updates 23 k libarchive x86_64 3.7.1-1.fc39 fedora 408 k libattr x86_64 2.5.1-8.fc39 fedora 18 k libblkid x86_64 2.39.4-1.fc39 updates 116 k libbrotli x86_64 1.1.0-1.fc39 fedora 336 k libcap x86_64 2.48-9.fc39 updates 68 k libcap-ng x86_64 0.8.3-8.fc39 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.2.1-5.fc39 updates 322 k libdb x86_64 5.3.28-56.fc39 fedora 760 k libeconf x86_64 0.5.2-2.fc39 updates 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.4-1.fc39 updates 161 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-7.fc39 updates 115 k libgomp x86_64 13.2.1-7.fc39 updates 324 k libidn2 x86_64 2.3.7-1.fc39 updates 119 k libmount x86_64 2.39.4-1.fc39 updates 154 k libnghttp2 x86_64 1.55.1-5.fc39 updates 75 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.4-1.fc39 updates 67 k libssh x86_64 0.10.6-2.fc39 updates 212 k libssh-config noarch 0.10.6-2.fc39 updates 9.0 k libstdc++ x86_64 13.2.1-7.fc39 updates 867 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.4-1.rc3.fc39 updates 93 k libunistring x86_64 1.1-5.fc39 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.4-1.fc39 updates 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 fedora 701 k libzstd x86_64 1.5.6-1.fc39 updates 312 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-13.fc39 updates 8.7 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc39.1 updates 88 k ncurses-libs x86_64 6.4-7.20230520.fc39.1 updates 336 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc39 fedora 2.2 M p11-kit x86_64 0.25.3-1.fc39 updates 520 k p11-kit-trust x86_64 0.25.3-1.fc39 updates 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-3.fc39 updates 542 k pam-libs x86_64 1.5.3-3.fc39 updates 56 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20240107-1.fc39 updates 58 k pyproject-srpm-macros noarch 1.12.0-1.fc39 updates 14 k python-srpm-macros noarch 3.12-4.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.12-1.fc39 updates 8.4 k qt6-srpm-macros noarch 6.6.2-1.fc39 updates 8.9 k readline x86_64 8.2-6.fc39 updates 212 k rpm x86_64 4.19.1.1-1.fc39 updates 538 k rpm-build-libs x86_64 4.19.1.1-1.fc39 updates 95 k rpm-libs x86_64 4.19.1.1-1.fc39 updates 312 k rpm-sequoia x86_64 1.6.0-1.fc39 updates 848 k rpmautospec-rpm-macros noarch 0.6.3-1.fc39 updates 10 k rust-srpm-macros noarch 26.2-1.fc39 updates 13 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k systemd-libs x86_64 254.10-1.fc39 updates 687 k util-linux-core x86_64 2.39.4-1.fc39 updates 507 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc39 fedora 266 k zlib x86_64 1.2.13-4.fc39 fedora 94 k zstd x86_64 1.5.6-1.fc39 updates 479 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total download size: 52 M Installed size: 179 M Downloading Packages: (1/152): basesystem-11-18.fc39.noarch.rpm 198 kB/s | 7.2 kB 00:00 (2/152): bzip2-1.0.8-16.fc39.x86_64.rpm 1.3 MB/s | 52 kB 00:00 (3/152): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 1.8 MB/s | 41 kB 00:00 (4/152): authselect-1.4.3-1.fc39.x86_64.rpm 1.3 MB/s | 149 kB 00:00 (5/152): authselect-libs-1.4.3-1.fc39.x86_64.rp 1.9 MB/s | 249 kB 00:00 (6/152): cpio-2.14-4.fc39.x86_64.rpm 7.7 MB/s | 279 kB 00:00 (7/152): cracklib-2.9.11-2.fc39.x86_64.rpm 4.9 MB/s | 94 kB 00:00 (8/152): diffutils-3.10-3.fc39.x86_64.rpm 11 MB/s | 398 kB 00:00 (9/152): ca-certificates-2023.2.60_v7.0.306-2.f 9.5 MB/s | 837 kB 00:00 (10/152): dwz-0.15-3.fc39.x86_64.rpm 7.6 MB/s | 134 kB 00:00 (11/152): ed-1.19-4.fc39.x86_64.rpm 4.6 MB/s | 79 kB 00:00 (12/152): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 12 MB/s | 793 kB 00:00 (13/152): efi-srpm-macros-5-9.fc39.noarch.rpm 1.4 MB/s | 22 kB 00:00 (14/152): fedora-gpg-keys-39-1.noarch.rpm 7.4 MB/s | 130 kB 00:00 (15/152): fedora-repos-39-1.noarch.rpm 586 kB/s | 9.3 kB 00:00 (16/152): file-5.44-5.fc39.x86_64.rpm 2.9 MB/s | 49 kB 00:00 (17/152): file-libs-5.44-5.fc39.x86_64.rpm 13 MB/s | 729 kB 00:00 (18/152): findutils-4.9.0-5.fc39.x86_64.rpm 9.9 MB/s | 492 kB 00:00 (19/152): fonts-srpm-macros-2.0.5-12.fc39.noarc 1.5 MB/s | 26 kB 00:00 (20/152): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 465 kB/s | 7.4 kB 00:00 (21/152): filesystem-3.18-6.fc39.x86_64.rpm 13 MB/s | 1.1 MB 00:00 (22/152): gdbm-libs-1.23-4.fc39.x86_64.rpm 3.4 MB/s | 56 kB 00:00 (23/152): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 448 kB/s | 7.8 kB 00:00 (24/152): gnat-srpm-macros-6-3.fc39.noarch.rpm 556 kB/s | 8.8 kB 00:00 (25/152): gmp-6.2.1-5.fc39.x86_64.rpm 9.4 MB/s | 313 kB 00:00 (26/152): gawk-5.2.2-2.fc39.x86_64.rpm 15 MB/s | 1.1 MB 00:00 (27/152): gzip-1.12-6.fc39.x86_64.rpm 8.2 MB/s | 166 kB 00:00 (28/152): grep-3.11-3.fc39.x86_64.rpm 8.9 MB/s | 298 kB 00:00 (29/152): info-7.0.3-3.fc39.x86_64.rpm 10 MB/s | 182 kB 00:00 (30/152): jansson-2.13.1-7.fc39.x86_64.rpm 2.6 MB/s | 44 kB 00:00 (31/152): kernel-srpm-macros-1.0-20.fc39.noarch 649 kB/s | 10 kB 00:00 (32/152): libattr-2.5.1-8.fc39.x86_64.rpm 976 kB/s | 18 kB 00:00 (33/152): libarchive-3.7.1-1.fc39.x86_64.rpm 12 MB/s | 408 kB 00:00 (34/152): libcap-ng-0.8.3-8.fc39.x86_64.rpm 1.9 MB/s | 32 kB 00:00 (35/152): libbrotli-1.1.0-1.fc39.x86_64.rpm 10 MB/s | 336 kB 00:00 (36/152): libcom_err-1.47.0-2.fc39.x86_64.rpm 1.5 MB/s | 26 kB 00:00 (37/152): libevent-2.1.12-9.fc39.x86_64.rpm 14 MB/s | 258 kB 00:00 (38/152): libffi-3.4.4-4.fc39.x86_64.rpm 2.3 MB/s | 40 kB 00:00 (39/152): libnsl2-2.0.0-6.fc39.x86_64.rpm 1.8 MB/s | 30 kB 00:00 (40/152): libpkgconf-1.9.5-2.fc39.x86_64.rpm 2.3 MB/s | 38 kB 00:00 (41/152): libdb-5.3.28-56.fc39.x86_64.rpm 14 MB/s | 760 kB 00:00 (42/152): libpsl-0.21.2-4.fc39.x86_64.rpm 3.7 MB/s | 63 kB 00:00 (43/152): libpwquality-1.4.5-6.fc39.x86_64.rpm 6.5 MB/s | 120 kB 00:00 (44/152): libselinux-3.5-5.fc39.x86_64.rpm 5.0 MB/s | 87 kB 00:00 (45/152): libsemanage-3.5-4.fc39.x86_64.rpm 6.6 MB/s | 120 kB 00:00 (46/152): libsigsegv-2.14-5.fc39.x86_64.rpm 1.6 MB/s | 27 kB 00:00 (47/152): libtasn1-4.19.0-3.fc39.x86_64.rpm 4.3 MB/s | 74 kB 00:00 (48/152): libsepol-3.5-2.fc39.x86_64.rpm 9.9 MB/s | 324 kB 00:00 (49/152): libutempter-1.2.1-10.fc39.x86_64.rpm 1.5 MB/s | 26 kB 00:00 (50/152): libverto-0.3.2-6.fc39.x86_64.rpm 1.2 MB/s | 20 kB 00:00 (51/152): libunistring-1.1-5.fc39.x86_64.rpm 14 MB/s | 543 kB 00:00 (52/152): libxcrypt-4.4.36-2.fc39.x86_64.rpm 5.7 MB/s | 119 kB 00:00 (53/152): lua-libs-5.4.6-3.fc39.x86_64.rpm 7.5 MB/s | 133 kB 00:00 (54/152): lz4-libs-1.9.4-4.fc39.x86_64.rpm 4.0 MB/s | 67 kB 00:00 (55/152): ocaml-srpm-macros-8-2.fc39.noarch.rpm 853 kB/s | 14 kB 00:00 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/usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-7.fc39.x86_64 1/152 Running scriptlet: libgcc-13.2.1-7.fc39.x86_64 1/152 Installing : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/152 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 2/152 Installing : fedora-release-identity-basic-39-36.noarch 3/152 Installing : fedora-gpg-keys-39-1.noarch 4/152 Installing : fedora-repos-39-1.noarch 5/152 Installing : fedora-release-common-39-36.noarch 6/152 Installing : fedora-release-39-36.noarch 7/152 Installing : setup-2.14.4-1.fc39.noarch 8/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 8/152 Installing : filesystem-3.18-6.fc39.x86_64 9/152 Installing : basesystem-11-18.fc39.noarch 10/152 Installing : rust-srpm-macros-26.2-1.fc39.noarch 11/152 Installing : qt6-srpm-macros-6.6.2-1.fc39.noarch 12/152 Installing : qt5-srpm-macros-5.15.12-1.fc39.noarch 13/152 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libutempter-1.2.1-10.fc39.x86_64 133/152 Installing : patch-2.7.6-22.fc39.x86_64 134/152 Installing : tar-2:1.35-2.fc39.x86_64 135/152 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 136/152 Installing : openblas-srpm-macros-2-14.fc39.noarch 137/152 Installing : ocaml-srpm-macros-8-2.fc39.noarch 138/152 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 139/152 Installing : gnat-srpm-macros-6-3.fc39.noarch 140/152 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 141/152 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : python-srpm-macros-3.12-4.fc39.noarch 144/152 Installing : forge-srpm-macros-0.3.1-1.fc39.noarch 145/152 Installing : go-srpm-macros-3.5.0-1.fc39.noarch 146/152 Installing : redhat-rpm-config-266-1.fc39.noarch 147/152 Installing : rpm-build-4.19.1.1-1.fc39.x86_64 148/152 Installing : pyproject-srpm-macros-1.12.0-1.fc39.noarch 149/152 Installing : util-linux-2.39.4-1.fc39.x86_64 150/152 Running scriptlet: util-linux-2.39.4-1.fc39.x86_64 150/152 Installing : which-2.21-40.fc39.x86_64 151/152 Installing : info-7.0.3-3.fc39.x86_64 152/152 Running scriptlet: filesystem-3.18-6.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 152/152 Running scriptlet: authselect-libs-1.4.3-1.fc39.x86_64 152/152 Running scriptlet: rpm-4.19.1.1-1.fc39.x86_64 152/152 Running scriptlet: info-7.0.3-3.fc39.x86_64 152/152 Verifying : authselect-1.4.3-1.fc39.x86_64 1/152 Verifying : authselect-libs-1.4.3-1.fc39.x86_64 2/152 Verifying : basesystem-11-18.fc39.noarch 3/152 Verifying : bzip2-1.0.8-16.fc39.x86_64 4/152 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 5/152 Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 6/152 Verifying : cpio-2.14-4.fc39.x86_64 7/152 Verifying : cracklib-2.9.11-2.fc39.x86_64 8/152 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 9/152 Verifying : diffutils-3.10-3.fc39.x86_64 10/152 Verifying : dwz-0.15-3.fc39.x86_64 11/152 Verifying : ed-1.19-4.fc39.x86_64 12/152 Verifying : efi-srpm-macros-5-9.fc39.noarch 13/152 Verifying : fedora-gpg-keys-39-1.noarch 14/152 Verifying : fedora-repos-39-1.noarch 15/152 Verifying : file-5.44-5.fc39.x86_64 16/152 Verifying : file-libs-5.44-5.fc39.x86_64 17/152 Verifying : filesystem-3.18-6.fc39.x86_64 18/152 Verifying : findutils-1:4.9.0-5.fc39.x86_64 19/152 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 20/152 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 21/152 Verifying : gawk-5.2.2-2.fc39.x86_64 22/152 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 23/152 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 24/152 Verifying : gmp-1:6.2.1-5.fc39.x86_64 25/152 Verifying : gnat-srpm-macros-6-3.fc39.noarch 26/152 Verifying : grep-3.11-3.fc39.x86_64 27/152 Verifying : gzip-1.12-6.fc39.x86_64 28/152 Verifying : info-7.0.3-3.fc39.x86_64 29/152 Verifying : jansson-2.13.1-7.fc39.x86_64 30/152 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 31/152 Verifying : libarchive-3.7.1-1.fc39.x86_64 32/152 Verifying : libattr-2.5.1-8.fc39.x86_64 33/152 Verifying : libbrotli-1.1.0-1.fc39.x86_64 34/152 Verifying : libcap-ng-0.8.3-8.fc39.x86_64 35/152 Verifying : libcom_err-1.47.0-2.fc39.x86_64 36/152 Verifying : libdb-5.3.28-56.fc39.x86_64 37/152 Verifying : libevent-2.1.12-9.fc39.x86_64 38/152 Verifying : libffi-3.4.4-4.fc39.x86_64 39/152 Verifying : libnsl2-2.0.0-6.fc39.x86_64 40/152 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 41/152 Verifying : libpsl-0.21.2-4.fc39.x86_64 42/152 Verifying : libpwquality-1.4.5-6.fc39.x86_64 43/152 Verifying : libselinux-3.5-5.fc39.x86_64 44/152 Verifying : libsemanage-3.5-4.fc39.x86_64 45/152 Verifying : libsepol-3.5-2.fc39.x86_64 46/152 Verifying : libsigsegv-2.14-5.fc39.x86_64 47/152 Verifying : libtasn1-4.19.0-3.fc39.x86_64 48/152 Verifying : libunistring-1.1-5.fc39.x86_64 49/152 Verifying : libutempter-1.2.1-10.fc39.x86_64 50/152 Verifying : libverto-0.3.2-6.fc39.x86_64 51/152 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 52/152 Verifying : libxml2-2.10.4-3.fc39.x86_64 53/152 Verifying : lua-libs-5.4.6-3.fc39.x86_64 54/152 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 55/152 Verifying : mpfr-4.2.0-3.fc39.x86_64 56/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 57/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 58/152 Verifying : openldap-2.6.6-1.fc39.x86_64 59/152 Verifying : openssl-libs-1:3.1.1-4.fc39.x86_64 60/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 61/152 Verifying : patch-2.7.6-22.fc39.x86_64 62/152 Verifying : pcre2-10.42-1.fc39.2.x86_64 63/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 64/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 65/152 Verifying : pkgconf-1.9.5-2.fc39.x86_64 66/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 67/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 68/152 Verifying : popt-1.19-3.fc39.x86_64 69/152 Verifying : python-srpm-macros-3.12-4.fc39.noarch 70/152 Verifying : sed-4.8-14.fc39.x86_64 71/152 Verifying : setup-2.14.4-1.fc39.noarch 72/152 Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 73/152 Verifying : tar-2:1.35-2.fc39.x86_64 74/152 Verifying : unzip-6.0-62.fc39.x86_64 75/152 Verifying : which-2.21-40.fc39.x86_64 76/152 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 77/152 Verifying : xz-5.4.4-1.fc39.x86_64 78/152 Verifying : xz-libs-5.4.4-1.fc39.x86_64 79/152 Verifying : zip-3.0-39.fc39.x86_64 80/152 Verifying : zlib-1.2.13-4.fc39.x86_64 81/152 Verifying : alternatives-1.26-1.fc39.x86_64 82/152 Verifying : ansible-srpm-macros-1-12.fc39.noarch 83/152 Verifying : audit-libs-3.1.2-8.fc39.x86_64 84/152 Verifying : bash-5.2.26-1.fc39.x86_64 85/152 Verifying : binutils-2.40-14.fc39.x86_64 86/152 Verifying : binutils-gold-2.40-14.fc39.x86_64 87/152 Verifying : coreutils-9.3-5.fc39.x86_64 88/152 Verifying : coreutils-common-9.3-5.fc39.x86_64 89/152 Verifying : crypto-policies-20231204-1.git1e3a2e4.fc39.noarc 90/152 Verifying : curl-8.2.1-5.fc39.x86_64 91/152 Verifying : debugedit-5.0-12.fc39.x86_64 92/152 Verifying : elfutils-0.191-2.fc39.x86_64 93/152 Verifying : elfutils-debuginfod-client-0.191-2.fc39.x86_64 94/152 Verifying : elfutils-default-yama-scope-0.191-2.fc39.noarch 95/152 Verifying : elfutils-libelf-0.191-2.fc39.x86_64 96/152 Verifying : elfutils-libs-0.191-2.fc39.x86_64 97/152 Verifying : fedora-release-39-36.noarch 98/152 Verifying : fedora-release-common-39-36.noarch 99/152 Verifying : fedora-release-identity-basic-39-36.noarch 100/152 Verifying : forge-srpm-macros-0.3.1-1.fc39.noarch 101/152 Verifying : gdb-minimal-14.2-1.fc39.x86_64 102/152 Verifying : glibc-2.38-18.fc39.x86_64 103/152 Verifying : glibc-common-2.38-18.fc39.x86_64 104/152 Verifying : glibc-gconv-extra-2.38-18.fc39.x86_64 105/152 Verifying : glibc-minimal-langpack-2.38-18.fc39.x86_64 106/152 Verifying : go-srpm-macros-3.5.0-1.fc39.noarch 107/152 Verifying : keyutils-libs-1.6.3-1.fc39.x86_64 108/152 Verifying : krb5-libs-1.21.2-3.fc39.x86_64 109/152 Verifying : libacl-2.3.1-9.fc39.x86_64 110/152 Verifying : libblkid-2.39.4-1.fc39.x86_64 111/152 Verifying : libcap-2.48-9.fc39.x86_64 112/152 Verifying : libcurl-8.2.1-5.fc39.x86_64 113/152 Verifying : libeconf-0.5.2-2.fc39.x86_64 114/152 Verifying : libfdisk-2.39.4-1.fc39.x86_64 115/152 Verifying : libgcc-13.2.1-7.fc39.x86_64 116/152 Verifying : libgomp-13.2.1-7.fc39.x86_64 117/152 Verifying : libidn2-2.3.7-1.fc39.x86_64 118/152 Verifying : libmount-2.39.4-1.fc39.x86_64 119/152 Verifying : libnghttp2-1.55.1-5.fc39.x86_64 120/152 Verifying : libsmartcols-2.39.4-1.fc39.x86_64 121/152 Verifying : libssh-0.10.6-2.fc39.x86_64 122/152 Verifying : libssh-config-0.10.6-2.fc39.noarch 123/152 Verifying : libstdc++-13.2.1-7.fc39.x86_64 124/152 Verifying : libtirpc-1.3.4-1.rc3.fc39.x86_64 125/152 Verifying : libuuid-2.39.4-1.fc39.x86_64 126/152 Verifying : libzstd-1.5.6-1.fc39.x86_64 127/152 Verifying : lua-srpm-macros-1-13.fc39.noarch 128/152 Verifying : ncurses-base-6.4-7.20230520.fc39.1.noarch 129/152 Verifying : ncurses-libs-6.4-7.20230520.fc39.1.x86_64 130/152 Verifying : p11-kit-0.25.3-1.fc39.x86_64 131/152 Verifying : p11-kit-trust-0.25.3-1.fc39.x86_64 132/152 Verifying : pam-1.5.3-3.fc39.x86_64 133/152 Verifying : pam-libs-1.5.3-3.fc39.x86_64 134/152 Verifying : publicsuffix-list-dafsa-20240107-1.fc39.noarch 135/152 Verifying : pyproject-srpm-macros-1.12.0-1.fc39.noarch 136/152 Verifying : qt5-srpm-macros-5.15.12-1.fc39.noarch 137/152 Verifying : qt6-srpm-macros-6.6.2-1.fc39.noarch 138/152 Verifying : readline-8.2-6.fc39.x86_64 139/152 Verifying : redhat-rpm-config-266-1.fc39.noarch 140/152 Verifying : rpm-4.19.1.1-1.fc39.x86_64 141/152 Verifying : rpm-build-4.19.1.1-1.fc39.x86_64 142/152 Verifying : rpm-build-libs-4.19.1.1-1.fc39.x86_64 143/152 Verifying : rpm-libs-4.19.1.1-1.fc39.x86_64 144/152 Verifying : rpm-sequoia-1.6.0-1.fc39.x86_64 145/152 Verifying : rpmautospec-rpm-macros-0.6.3-1.fc39.noarch 146/152 Verifying : rust-srpm-macros-26.2-1.fc39.noarch 147/152 Verifying : shadow-utils-2:4.14.0-2.fc39.x86_64 148/152 Verifying : systemd-libs-254.10-1.fc39.x86_64 149/152 Verifying : util-linux-2.39.4-1.fc39.x86_64 150/152 Verifying : util-linux-core-2.39.4-1.fc39.x86_64 151/152 Verifying : zstd-1.5.6-1.fc39.x86_64 152/152 Installed products updated. Installed: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-5.fc39.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-18.fc39.x86_64 glibc-common-2.38-18.fc39.x86_64 glibc-gconv-extra-2.38-18.fc39.x86_64 glibc-minimal-langpack-2.38-18.fc39.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-2:1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc39.x86_64 ansible-srpm-macros-1-12.fc39.noarch audit-libs-3.1.2-8.fc39.x86_64 authselect-1.4.3-1.fc39.x86_64 authselect-libs-1.4.3-1.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.26-1.fc39.x86_64 binutils-2.40-14.fc39.x86_64 binutils-gold-2.40-14.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch coreutils-9.3-5.fc39.x86_64 coreutils-common-9.3-5.fc39.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc39.noarch curl-8.2.1-5.fc39.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.191-2.fc39.x86_64 elfutils-debuginfod-client-0.191-2.fc39.x86_64 elfutils-default-yama-scope-0.191-2.fc39.noarch elfutils-libelf-0.191-2.fc39.x86_64 elfutils-libs-0.191-2.fc39.x86_64 fedora-gpg-keys-39-1.noarch fedora-release-39-36.noarch fedora-release-common-39-36.noarch fedora-release-identity-basic-39-36.noarch fedora-repos-39-1.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-5.fc39.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.3.1-1.fc39.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.2-1.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38-18.fc39.x86_64 glibc-common-2.38-18.fc39.x86_64 glibc-gconv-extra-2.38-18.fc39.x86_64 glibc-minimal-langpack-2.38-18.fc39.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.5.0-1.fc39.noarch gpg-pubkey-18b8e74c-62f2920f grep-3.11-3.fc39.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc39.x86_64 krb5-libs-1.21.2-3.fc39.x86_64 libacl-2.3.1-9.fc39.x86_64 libarchive-3.7.1-1.fc39.x86_64 libattr-2.5.1-8.fc39.x86_64 libblkid-2.39.4-1.fc39.x86_64 libbrotli-1.1.0-1.fc39.x86_64 libcap-2.48-9.fc39.x86_64 libcap-ng-0.8.3-8.fc39.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.2.1-5.fc39.x86_64 libdb-5.3.28-56.fc39.x86_64 libeconf-0.5.2-2.fc39.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.4-1.fc39.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-7.fc39.x86_64 libgomp-13.2.1-7.fc39.x86_64 libidn2-2.3.7-1.fc39.x86_64 libmount-2.39.4-1.fc39.x86_64 libnghttp2-1.55.1-5.fc39.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.4-1.fc39.x86_64 libssh-0.10.6-2.fc39.x86_64 libssh-config-0.10.6-2.fc39.noarch libstdc++-13.2.1-7.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc3.fc39.x86_64 libunistring-1.1-5.fc39.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.4-1.fc39.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.6-1.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-13.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc39.1.noarch ncurses-libs-6.4-7.20230520.fc39.1.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc39.x86_64 p11-kit-0.25.3-1.fc39.x86_64 p11-kit-trust-0.25.3-1.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-3.fc39.x86_64 pam-libs-1.5.3-3.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc39.noarch pyproject-srpm-macros-1.12.0-1.fc39.noarch python-srpm-macros-3.12-4.fc39.noarch qt5-srpm-macros-5.15.12-1.fc39.noarch qt6-srpm-macros-6.6.2-1.fc39.noarch readline-8.2-6.fc39.x86_64 redhat-rpm-config-266-1.fc39.noarch rpm-4.19.1.1-1.fc39.x86_64 rpm-build-4.19.1.1-1.fc39.x86_64 rpm-build-libs-4.19.1.1-1.fc39.x86_64 rpm-libs-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.6.3-1.fc39.noarch rust-srpm-macros-26.2-1.fc39.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-2.fc39.x86_64 sqlite-libs-3.42.0-7.fc39.x86_64 systemd-libs-254.10-1.fc39.x86_64 tar-1.35-2.fc39.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.4-1.fc39.x86_64 util-linux-core-2.39.4-1.fc39.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc39.x86_64 zlib-1.2.13-4.fc39.x86_64 zstd-1.5.6-1.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-x86_64-1715218004.743702/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1715218004.743702/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1715218004.743702/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1715218004.743702/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-hxv8j3qr/R-CRAN-SeuratObject/R-CRAN-SeuratObject.spec) Config(child) 1 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm) Config(fedora-39-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-x86_64-1715218004.743702/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.19.1.1-1.fc39.x86_64 rpm-sequoia-1.6.0-1.fc39.x86_64 python3-dnf-4.19.2-1.fc39.noarch python3-dnf-plugins-core-4.6.0-1.fc39.noarch yum-4.19.2-1.fc39.noarch dnf5-5.1.17-1.fc39.x86_64 dnf5-plugins-5.1.17-1.fc39.x86_64 Finish: chroot init Start: build phase for R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm Start: build setup for R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. 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Copr repository 44 kB/s | 1.5 kB 00:00 Copr repository 66 MB/s | 26 MB 00:00 fedora 715 kB/s | 23 kB 00:00 updates 688 kB/s | 23 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-Matrix x86_64 1.6.5-1.fc39.copr6886765 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.12-1.fc39.copr6877523 copr_base 2.0 M R-CRAN-RcppEigen x86_64 0.3.4.0.0-1.fc39.copr7306782 copr_base 1.4 M R-CRAN-future noarch 1.33.2-1.fc39.copr7307827 copr_base 656 k R-CRAN-future.apply noarch 1.11.2-1.fc39.copr7308122 copr_base 171 k R-CRAN-generics noarch 0.1.3-1.fc39.copr6279393 copr_base 100 k R-CRAN-lifecycle noarch 1.0.4-1.fc39.copr6614518 copr_base 130 k R-CRAN-progressr noarch 0.14.0-1.fc39.copr6284371 copr_base 358 k R-CRAN-rlang x86_64 1.1.3-1.fc39.copr6880930 copr_base 1.6 M R-CRAN-sp x86_64 2.1.4-1.fc39.copr7395268 copr_base 1.8 M R-CRAN-spam x86_64 2.10.0-1.fc39.copr6559612 copr_base 2.7 M R-core x86_64 4.3.3-1.fc39 updates 64 M R-devel x86_64 4.3.3-1.fc39 updates 10 k Installing dependencies: R-CRAN-cli x86_64 3.6.2-1.fc39.copr6742501 copr_base 1.3 M R-CRAN-codetools noarch 0.2.20-1.fc39.copr7307081 copr_base 102 k R-CRAN-digest x86_64 0.6.35-1.fc39.copr7305174 copr_base 225 k R-CRAN-dotCall64 x86_64 1.1.1-1.fc39.copr6703968 copr_base 45 k R-CRAN-globals noarch 0.16.3-1.fc39.copr7307300 copr_base 120 k R-CRAN-glue x86_64 1.7.0-1.fc39.copr6877494 copr_base 165 k R-CRAN-lattice x86_64 0.22.6-1.fc39.copr7307082 copr_base 1.4 M R-CRAN-listenv noarch 0.9.1-1.fc39.copr6972506 copr_base 119 k R-CRAN-parallelly x86_64 1.37.1-1.fc39.copr7307084 copr_base 398 k R-core-devel x86_64 4.3.3-1.fc39 updates 94 k R-java x86_64 4.3.3-1.fc39 updates 11 k R-java-devel x86_64 4.3.3-1.fc39 updates 10 k R-littler x86_64 0.3.19-1.fc39 updates 76 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.11-2.fc39 updates 521 k annobin-docs noarch 12.46-1.fc39 updates 88 k annobin-plugin-gcc x86_64 12.46-1.fc39 updates 958 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc39 fedora 20 k brotli-devel x86_64 1.1.0-1.fc39 fedora 34 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k cairo x86_64 1.18.0-1.fc39 fedora 710 k cmake-filesystem x86_64 3.27.7-1.fc39 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-7.fc39 updates 11 M crypto-policies-scripts noarch 20231204-1.git1e3a2e4.fc39 updates 117 k cups-libs x86_64 1:2.4.7-13.fc39 updates 267 k dbus-libs x86_64 1:1.14.10-1.fc39 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc39 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.3-1.fc39 updates 7.2 k expat x86_64 2.6.2-1.fc39 updates 114 k flexiblas x86_64 3.4.2-1.fc39 updates 25 k flexiblas-devel x86_64 3.4.2-1.fc39 updates 121 k flexiblas-netlib x86_64 3.4.2-1.fc39 updates 3.1 M flexiblas-netlib64 x86_64 3.4.2-1.fc39 updates 3.0 M flexiblas-openblas-openmp x86_64 3.4.2-1.fc39 updates 18 k flexiblas-openblas-openmp64 x86_64 3.4.2-1.fc39 updates 18 k fontconfig x86_64 2.14.2-6.fc39 updates 296 k fontconfig-devel x86_64 2.14.2-6.fc39 updates 164 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc39 fedora 414 k freetype-devel x86_64 2.13.1-2.fc39 fedora 950 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-7.fc39 updates 34 M gcc-c++ x86_64 13.2.1-7.fc39 updates 13 M gcc-gfortran x86_64 13.2.1-7.fc39 updates 12 M gcc-plugin-annobin x86_64 13.2.1-7.fc39 updates 52 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.3-1.fc39 updates 2.8 M glib2-devel x86_64 2.78.3-1.fc39 updates 596 k glibc-devel x86_64 2.38-18.fc39 updates 86 k glibc-headers-x86 noarch 2.38-18.fc39 updates 571 k gnutls x86_64 3.8.5-1.fc39 updates 1.1 M google-noto-fonts-common noarch 20240101-1.fc39 updates 17 k google-noto-sans-vf-fonts noarch 20240101-1.fc39 updates 593 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.1-2.fc39 fedora 975 k harfbuzz-devel x86_64 8.2.1-2.fc39 fedora 450 k harfbuzz-icu x86_64 8.2.1-2.fc39 fedora 17 k java-17-openjdk x86_64 1:17.0.9.0.9-3.fc39 updates 407 k java-17-openjdk-devel x86_64 1:17.0.9.0.9-3.fc39 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.9.0.9-3.fc39 updates 44 M javapackages-filesystem noarch 6.1.0-10.fc39 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.8.3-200.fc39 updates 1.6 M libICE x86_64 1.0.10-11.fc39 fedora 70 k libRmath x86_64 4.3.3-1.fc39 updates 121 k libRmath-devel x86_64 4.3.3-1.fc39 updates 16 k libSM x86_64 1.2.3-13.fc39 fedora 41 k libX11 x86_64 1.8.9-1.fc39 updates 650 k libX11-common noarch 1.8.9-1.fc39 updates 176 k libX11-devel x86_64 1.8.9-1.fc39 updates 1.0 M libX11-xcb x86_64 1.8.9-1.fc39 updates 12 k libXau x86_64 1.0.11-3.fc39 fedora 31 k libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-3.fc39 fedora 72 k libXft-devel x86_64 2.3.8-3.fc39 fedora 50 k libXi x86_64 1.8.1-2.fc39 fedora 40 k libXmu x86_64 1.1.4-3.fc39 fedora 76 k libXrender x86_64 0.9.11-3.fc39 fedora 27 k libXrender-devel x86_64 0.9.11-3.fc39 fedora 19 k libXt x86_64 1.2.1-5.fc39 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.4-1.fc39 updates 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc39 fedora 32 k libgfortran x86_64 13.2.1-7.fc39 updates 904 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.4-1.fc39 updates 18 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.2.1-7.fc39 updates 200 k libquadmath-devel x86_64 13.2.1-7.fc39 updates 41 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.2.1-7.fc39 updates 2.6 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc39 fedora 202 k libtirpc-devel x86_64 1.3.4-1.rc3.fc39 updates 124 k libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k libwebp x86_64 1.3.2-2.fc39 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.10.4-3.fc39 fedora 527 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc39 fedora 32 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-19.fc39 updates 137 k nss x86_64 3.99.0-1.fc39 updates 702 k nss-softokn x86_64 3.99.0-1.fc39 updates 419 k nss-softokn-freebl x86_64 3.99.0-1.fc39 updates 381 k nss-sysinit x86_64 3.99.0-1.fc39 updates 18 k nss-util x86_64 3.99.0-1.fc39 updates 87 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc39 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-2.fc39 updates 1.5 M python3 x86_64 3.12.3-2.fc39 updates 27 k python3-libs x86_64 3.12.3-2.fc39 updates 9.2 M python3-setuptools noarch 67.7.2-7.fc39 fedora 1.5 M sysprof-capture-devel x86_64 45.1-1.fc39 updates 59 k tcl x86_64 1:8.6.12-5.fc39 fedora 1.1 M tcl-devel x86_64 1:8.6.12-5.fc39 fedora 169 k tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M tk-devel x86_64 1:8.6.12-5.fc39 fedora 537 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc39 fedora 56 k tzdata noarch 2024a-2.fc39 updates 715 k tzdata-java noarch 2024a-2.fc39 updates 208 k xdg-utils noarch 1.1.3-15.fc39 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k Transaction Summary ======================================================================================== Install 176 Packages Total download size: 285 M Installed size: 893 M Downloading Packages: (1/176): R-CRAN-RcppEigen-0.3.4.0.0-1.fc39.copr 12 MB/s | 1.4 MB 00:00 (2/176): R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523. 15 MB/s | 2.0 MB 00:00 (3/176): R-CRAN-Matrix-1.6.5-1.fc39.copr6886765 29 MB/s | 4.1 MB 00:00 (4/176): R-CRAN-cli-3.6.2-1.fc39.copr6742501.x8 53 MB/s | 1.3 MB 00:00 (5/176): R-CRAN-codetools-0.2.20-1.fc39.copr730 5.0 MB/s | 102 kB 00:00 (6/176): R-CRAN-digest-0.6.35-1.fc39.copr730517 18 MB/s | 225 kB 00:00 (7/176): R-CRAN-future.apply-1.11.2-1.fc39.copr 11 MB/s | 171 kB 00:00 (8/176): R-CRAN-future-1.33.2-1.fc39.copr730782 23 MB/s | 656 kB 00:00 (9/176): R-CRAN-generics-0.1.3-1.fc39.copr62793 9.5 MB/s | 100 kB 00:00 (10/176): R-CRAN-globals-0.16.3-1.fc39.copr7307 11 MB/s | 120 kB 00:00 (11/176): R-CRAN-glue-1.7.0-1.fc39.copr6877494. 14 MB/s | 165 kB 00:00 (12/176): R-CRAN-lifecycle-1.0.4-1.fc39.copr661 10 MB/s | 130 kB 00:00 (13/176): R-CRAN-listenv-0.9.1-1.fc39.copr69725 11 MB/s | 119 kB 00:00 (14/176): R-CRAN-lattice-0.22.6-1.fc39.copr7307 43 MB/s | 1.4 MB 00:00 (15/176): R-CRAN-parallelly-1.37.1-1.fc39.copr7 29 MB/s | 398 kB 00:00 (16/176): R-CRAN-progressr-0.14.0-1.fc39.copr62 26 MB/s | 358 kB 00:00 (17/176): R-CRAN-rlang-1.1.3-1.fc39.copr6880930 36 MB/s | 1.6 MB 00:00 (18/176): R-CRAN-sp-2.1.4-1.fc39.copr7395268.x8 43 MB/s | 1.8 MB 00:00 (19/176): R-CRAN-dotCall64-1.1.1-1.fc39.copr670 346 kB/s | 45 kB 00:00 (20/176): R-CRAN-spam-2.10.0-1.fc39.copr6559612 51 MB/s | 2.7 MB 00:00 (21/176): R-rpm-macros-1.2.1-7.fc39.noarch.rpm 67 kB/s | 11 kB 00:00 (22/176): brotli-1.1.0-1.fc39.x86_64.rpm 175 kB/s | 20 kB 00:00 (23/176): avahi-libs-0.8-24.fc39.x86_64.rpm 190 kB/s | 67 kB 00:00 (24/176): brotli-devel-1.1.0-1.fc39.x86_64.rpm 208 kB/s | 34 kB 00:00 (25/176): abattis-cantarell-vf-fonts-0.301-10.f 260 kB/s | 121 kB 00:00 (26/176): cmake-filesystem-3.27.7-1.fc39.x86_64 217 kB/s | 19 kB 00:00 (27/176): copy-jdk-configs-4.1-3.fc39.noarch.rp 299 kB/s | 28 kB 00:00 (28/176): bzip2-devel-1.0.8-16.fc39.x86_64.rpm 860 kB/s | 214 kB 00:00 (29/176): dbus-libs-1.14.10-1.fc39.x86_64.rpm 949 kB/s | 156 kB 00:00 (30/176): cairo-1.18.0-1.fc39.x86_64.rpm 1.8 MB/s | 710 kB 00:00 (31/176): desktop-file-utils-0.26-9.fc39.x86_64 777 kB/s | 72 kB 00:00 (32/176): fonts-filesystem-2.0.5-12.fc39.noarch 104 kB/s | 8.2 kB 00:00 (33/176): freetype-2.13.1-2.fc39.x86_64.rpm 2.3 MB/s | 414 kB 00:00 (34/176): freetype-devel-2.13.1-2.fc39.x86_64.r 5.5 MB/s | 950 kB 00:00 (35/176): gc-8.2.2-4.fc39.x86_64.rpm 1.3 MB/s | 110 kB 00:00 (36/176): fribidi-1.0.13-2.fc39.x86_64.rpm 1.0 MB/s | 91 kB 00:00 (37/176): gettext-envsubst-0.22-2.fc39.x86_64.r 441 kB/s | 36 kB 00:00 (38/176): gettext-0.22-2.fc39.x86_64.rpm 9.1 MB/s | 1.1 MB 00:00 (39/176): gettext-libs-0.22-2.fc39.x86_64.rpm 3.0 MB/s | 328 kB 00:00 (40/176): gettext-runtime-0.22-2.fc39.x86_64.rp 1.4 MB/s | 120 kB 00:00 (41/176): graphite2-devel-1.3.14-12.fc39.x86_64 258 kB/s | 20 kB 00:00 (42/176): graphite2-1.3.14-12.fc39.x86_64.rpm 1.1 MB/s | 95 kB 00:00 (43/176): harfbuzz-8.2.1-2.fc39.x86_64.rpm 5.7 MB/s | 975 kB 00:00 (44/176): default-fonts-core-sans-4.0-9.fc39.no 31 kB/s | 32 kB 00:01 (45/176): guile22-2.2.7-9.fc39.x86_64.rpm 24 MB/s | 6.5 MB 00:00 (46/176): harfbuzz-devel-8.2.1-2.fc39.x86_64.rp 4.3 MB/s | 450 kB 00:00 (47/176): harfbuzz-icu-8.2.1-2.fc39.x86_64.rpm 205 kB/s | 17 kB 00:00 (48/176): javapackages-filesystem-6.1.0-10.fc39 155 kB/s | 12 kB 00:00 (49/176): jbigkit-libs-2.1-26.fc39.x86_64.rpm 646 kB/s | 53 kB 00:00 (50/176): libICE-1.0.10-11.fc39.x86_64.rpm 724 kB/s | 70 kB 00:00 (51/176): libSM-1.2.3-13.fc39.x86_64.rpm 501 kB/s | 41 kB 00:00 (52/176): libXau-1.0.11-3.fc39.x86_64.rpm 384 kB/s | 31 kB 00:00 (53/176): libXau-devel-1.0.11-3.fc39.x86_64.rpm 157 kB/s | 14 kB 00:00 (54/176): libXcomposite-0.4.5-10.fc39.x86_64.rp 264 kB/s | 23 kB 00:00 (55/176): libXext-1.3.5-3.fc39.x86_64.rpm 456 kB/s | 39 kB 00:00 (56/176): libXft-devel-2.3.8-3.fc39.x86_64.rpm 637 kB/s | 50 kB 00:00 (57/176): libXi-1.8.1-2.fc39.x86_64.rpm 494 kB/s | 40 kB 00:00 (58/176): libXft-2.3.8-3.fc39.x86_64.rpm 759 kB/s | 72 kB 00:00 (59/176): libXmu-1.1.4-3.fc39.x86_64.rpm 969 kB/s | 76 kB 00:00 (60/176): libXrender-0.9.11-3.fc39.x86_64.rpm 338 kB/s | 27 kB 00:00 (61/176): libXrender-devel-0.9.11-3.fc39.x86_64 233 kB/s | 19 kB 00:00 (62/176): libXt-1.2.1-5.fc39.x86_64.rpm 2.1 MB/s | 178 kB 00:00 (63/176): libXtst-1.2.4-3.fc39.x86_64.rpm 244 kB/s | 20 kB 00:00 (64/176): libdatrie-0.2.13-7.fc39.x86_64.rpm 406 kB/s | 32 kB 00:00 (65/176): libffi-devel-3.4.4-4.fc39.x86_64.rpm 358 kB/s | 29 kB 00:00 (66/176): libfontenc-1.1.6-3.fc39.x86_64.rpm 407 kB/s | 32 kB 00:00 (67/176): libicu-devel-73.2-2.fc39.x86_64.rpm 10 MB/s | 924 kB 00:00 (68/176): libb2-0.98.1-9.fc39.x86_64.rpm 73 kB/s | 25 kB 00:00 (69/176): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 1/1 Preparing : 1/1 Installing : zlib-devel-1.2.13-4.fc39.x86_64 1/176 Installing : nspr-4.35.0-19.fc39.x86_64 2/176 Installing : libgfortran-13.2.1-7.fc39.x86_64 3/176 Installing : nss-util-3.99.0-1.fc39.x86_64 4/176 Installing : libquadmath-13.2.1-7.fc39.x86_64 5/176 Installing : xorg-x11-proto-devel-2023.2-2.fc39.noarch 6/176 Installing : libpng-2:1.6.37-15.fc39.x86_64 7/176 Installing : libmpc-1.3.1-3.fc39.x86_64 8/176 Installing : tcl-1:8.6.12-5.fc39.x86_64 9/176 Installing : libicu-73.2-2.fc39.x86_64 10/176 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 11/176 Installing : libicu-devel-73.2-2.fc39.x86_64 12/176 Installing : tcl-devel-1:8.6.12-5.fc39.x86_64 13/176 Installing : libRmath-4.3.3-1.fc39.x86_64 14/176 Installing : xz-devel-5.4.4-1.fc39.x86_64 15/176 Installing : openblas-0.3.21-6.fc39.x86_64 16/176 Installing : 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Verifying : R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 13/176 Verifying : R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch 14/176 Verifying : R-CRAN-listenv-0.9.1-1.fc39.copr6972506.noarch 15/176 Verifying : R-CRAN-parallelly-1.37.1-1.fc39.copr7307084.x86_ 16/176 Verifying : R-CRAN-progressr-0.14.0-1.fc39.copr6284371.noarc 17/176 Verifying : R-CRAN-rlang-1.1.3-1.fc39.copr6880930.x86_64 18/176 Verifying : R-CRAN-sp-2.1.4-1.fc39.copr7395268.x86_64 19/176 Verifying : R-CRAN-spam-2.10.0-1.fc39.copr6559612.x86_64 20/176 Verifying : R-rpm-macros-1.2.1-7.fc39.noarch 21/176 Verifying : abattis-cantarell-vf-fonts-0.301-10.fc39.noarch 22/176 Verifying : avahi-libs-0.8-24.fc39.x86_64 23/176 Verifying : brotli-1.1.0-1.fc39.x86_64 24/176 Verifying : brotli-devel-1.1.0-1.fc39.x86_64 25/176 Verifying : bzip2-devel-1.0.8-16.fc39.x86_64 26/176 Verifying : cairo-1.18.0-1.fc39.x86_64 27/176 Verifying : cmake-filesystem-3.27.7-1.fc39.x86_64 28/176 Verifying : copy-jdk-configs-4.1-3.fc39.noarch 29/176 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libquadmath-13.2.1-7.fc39.x86_64 161/176 Verifying : libquadmath-devel-13.2.1-7.fc39.x86_64 162/176 Verifying : libstdc++-devel-13.2.1-7.fc39.x86_64 163/176 Verifying : libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 164/176 Verifying : nspr-4.35.0-19.fc39.x86_64 165/176 Verifying : nss-3.99.0-1.fc39.x86_64 166/176 Verifying : nss-softokn-3.99.0-1.fc39.x86_64 167/176 Verifying : nss-softokn-freebl-3.99.0-1.fc39.x86_64 168/176 Verifying : nss-sysinit-3.99.0-1.fc39.x86_64 169/176 Verifying : nss-util-3.99.0-1.fc39.x86_64 170/176 Verifying : python-pip-wheel-23.2.1-2.fc39.noarch 171/176 Verifying : python3-3.12.3-2.fc39.x86_64 172/176 Verifying : python3-libs-3.12.3-2.fc39.x86_64 173/176 Verifying : sysprof-capture-devel-45.1-1.fc39.x86_64 174/176 Verifying : tzdata-2024a-2.fc39.noarch 175/176 Verifying : tzdata-java-2024a-2.fc39.noarch 176/176 Installed products updated. Installed: R-CRAN-Matrix-1.6.5-1.fc39.copr6886765.x86_64 R-CRAN-Rcpp-1.0.12-1.fc39.copr6877523.x86_64 R-CRAN-RcppEigen-0.3.4.0.0-1.fc39.copr7306782.x86_64 R-CRAN-cli-3.6.2-1.fc39.copr6742501.x86_64 R-CRAN-codetools-0.2.20-1.fc39.copr7307081.noarch R-CRAN-digest-0.6.35-1.fc39.copr7305174.x86_64 R-CRAN-dotCall64-1.1.1-1.fc39.copr6703968.x86_64 R-CRAN-future-1.33.2-1.fc39.copr7307827.noarch R-CRAN-future.apply-1.11.2-1.fc39.copr7308122.noarch R-CRAN-generics-0.1.3-1.fc39.copr6279393.noarch R-CRAN-globals-0.16.3-1.fc39.copr7307300.noarch R-CRAN-glue-1.7.0-1.fc39.copr6877494.x86_64 R-CRAN-lattice-0.22.6-1.fc39.copr7307082.x86_64 R-CRAN-lifecycle-1.0.4-1.fc39.copr6614518.noarch R-CRAN-listenv-0.9.1-1.fc39.copr6972506.noarch R-CRAN-parallelly-1.37.1-1.fc39.copr7307084.x86_64 R-CRAN-progressr-0.14.0-1.fc39.copr6284371.noarch R-CRAN-rlang-1.1.3-1.fc39.copr6880930.x86_64 R-CRAN-sp-2.1.4-1.fc39.copr7395268.x86_64 R-CRAN-spam-2.10.0-1.fc39.copr6559612.x86_64 R-core-4.3.3-1.fc39.x86_64 R-core-devel-4.3.3-1.fc39.x86_64 R-devel-4.3.3-1.fc39.x86_64 R-java-4.3.3-1.fc39.x86_64 R-java-devel-4.3.3-1.fc39.x86_64 R-littler-0.3.19-1.fc39.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.11-2.fc39.x86_64 annobin-docs-12.46-1.fc39.noarch annobin-plugin-gcc-12.46-1.fc39.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc39.x86_64 brotli-devel-1.1.0-1.fc39.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.18.0-1.fc39.x86_64 cmake-filesystem-3.27.7-1.fc39.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-7.fc39.x86_64 crypto-policies-scripts-20231204-1.git1e3a2e4.fc39.noarch cups-libs-1:2.4.7-13.fc39.x86_64 dbus-libs-1:1.14.10-1.fc39.x86_64 default-fonts-core-sans-4.0-9.fc39.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.3-1.fc39.noarch expat-2.6.2-1.fc39.x86_64 flexiblas-3.4.2-1.fc39.x86_64 flexiblas-devel-3.4.2-1.fc39.x86_64 flexiblas-netlib-3.4.2-1.fc39.x86_64 flexiblas-netlib64-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp-3.4.2-1.fc39.x86_64 flexiblas-openblas-openmp64-3.4.2-1.fc39.x86_64 fontconfig-2.14.2-6.fc39.x86_64 fontconfig-devel-2.14.2-6.fc39.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc39.x86_64 freetype-devel-2.13.1-2.fc39.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-7.fc39.x86_64 gcc-c++-13.2.1-7.fc39.x86_64 gcc-gfortran-13.2.1-7.fc39.x86_64 gcc-plugin-annobin-13.2.1-7.fc39.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.3-1.fc39.x86_64 glib2-devel-2.78.3-1.fc39.x86_64 glibc-devel-2.38-18.fc39.x86_64 glibc-headers-x86-2.38-18.fc39.noarch gnutls-3.8.5-1.fc39.x86_64 google-noto-fonts-common-20240101-1.fc39.noarch google-noto-sans-vf-fonts-20240101-1.fc39.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.1-2.fc39.x86_64 harfbuzz-devel-8.2.1-2.fc39.x86_64 harfbuzz-icu-8.2.1-2.fc39.x86_64 java-17-openjdk-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-devel-1:17.0.9.0.9-3.fc39.x86_64 java-17-openjdk-headless-1:17.0.9.0.9-3.fc39.x86_64 javapackages-filesystem-6.1.0-10.fc39.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.8.3-200.fc39.x86_64 libICE-1.0.10-11.fc39.x86_64 libRmath-4.3.3-1.fc39.x86_64 libRmath-devel-4.3.3-1.fc39.x86_64 libSM-1.2.3-13.fc39.x86_64 libX11-1.8.9-1.fc39.x86_64 libX11-common-1.8.9-1.fc39.noarch libX11-devel-1.8.9-1.fc39.x86_64 libX11-xcb-1.8.9-1.fc39.x86_64 libXau-1.0.11-3.fc39.x86_64 libXau-devel-1.0.11-3.fc39.x86_64 libXcomposite-0.4.5-10.fc39.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-3.fc39.x86_64 libXft-devel-2.3.8-3.fc39.x86_64 libXi-1.8.1-2.fc39.x86_64 libXmu-1.1.4-3.fc39.x86_64 libXrender-0.9.11-3.fc39.x86_64 libXrender-devel-0.9.11-3.fc39.x86_64 libXt-1.2.1-5.fc39.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.4-1.fc39.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc39.x86_64 libgfortran-13.2.1-7.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.4-1.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.2.1-7.fc39.x86_64 libquadmath-devel-13.2.1-7.fc39.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.2.1-7.fc39.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc39.x86_64 libtirpc-devel-1.3.4-1.rc3.fc39.x86_64 libtool-ltdl-2.4.7-7.fc39.x86_64 libwebp-1.3.2-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.10.4-3.fc39.x86_64 lksctp-tools-1.0.19-4.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-19.fc39.x86_64 nss-3.99.0-1.fc39.x86_64 nss-softokn-3.99.0-1.fc39.x86_64 nss-softokn-freebl-3.99.0-1.fc39.x86_64 nss-sysinit-3.99.0-1.fc39.x86_64 nss-util-3.99.0-1.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc39.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-2.fc39.noarch python3-3.12.3-2.fc39.x86_64 python3-libs-3.12.3-2.fc39.x86_64 python3-setuptools-67.7.2-7.fc39.noarch sysprof-capture-devel-45.1-1.fc39.x86_64 tcl-1:8.6.12-5.fc39.x86_64 tcl-devel-1:8.6.12-5.fc39.x86_64 tk-1:8.6.12-5.fc39.x86_64 tk-devel-1:8.6.12-5.fc39.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc39.x86_64 tzdata-2024a-2.fc39.noarch tzdata-java-2024a-2.fc39.noarch xdg-utils-1.1.3-15.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-2.fc39.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-devel-1.2.13-4.fc39.x86_64 Complete! Finish: build setup for R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm Start: rpmbuild R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.gx6ITV + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf SeuratObject + /usr/bin/mkdir -p SeuratObject + cd SeuratObject + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/SeuratObject_5.0.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/SeuratObject-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/SeuratObject-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d SeuratObject/src ']' + find SeuratObject/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d SeuratObject/src ']' + find 'SeuratObject/src/Make*' -type f -exec sed -i s@-g0@@g '{}' ';' find: ‘SeuratObject/src/Make*’: No such file or directory + true + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.QVI9K8 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd SeuratObject + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VKaOJc + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd SeuratObject + mkdir -p /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64/usr/local/lib/R/library SeuratObject * installing *source* package ‘SeuratObject’ ... ** package ‘SeuratObject’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)’ using C++ compiler: ‘g++ (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c RcppExports.cpp -o RcppExports.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = assign_op]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:917:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:713:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/local/lib/R/library/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ RcppExports.cpp:20:55: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c data_manipulation.cpp -o data_manipulation.o In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:205, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:174: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:165: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:271: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:27:22: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:33:26: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:33:26: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ data_manipulation.cpp:83:80: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ data_manipulation.cpp: In function ‘Eigen::SparseMatrix RowMergeMatricesList(Rcpp::List, Rcpp::List, std::vector >)’: data_manipulation.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 102 | for(int j = 0; j < mat_vec.size(); j++) { | ~~^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:58:63: required from ‘struct Eigen::internal::unary_evaluator >, Eigen::internal::IteratorBased, double>’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:27:23: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:336:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1505:8: required from ‘struct Eigen::internal::evaluator >’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1181:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1063:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1110:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:111:31: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] gcc -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c valid_pointer.c -o valid_pointer.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o SeuratObject.so RcppExports.o data_manipulation.o valid_pointer.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64/usr/local/lib/R/library/00LOCK-SeuratObject/00new/SeuratObject/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘SeuratObject’ finding HTML links ... done AddMetaData-StdAssay html AddMetaData html Assay-class html Assay-validity html Assay5-class html Assay5-validity html Assay5T-class html AssayData-StdAssay html AssayData html AttachDeps html Boundaries html CastAssay-StdAssay html CastAssay html Cells-StdAssay html Cells html CellsByIdentities html CellsByImage html Centroids-class html Centroids-methods html CheckDots html CheckFeaturesNames html CheckGC html CheckLayersName html CheckMatrix html ClassKey html Command html CreateAssay5Object html CreateAssayObject html CreateCentroids html CreateDimReducObject html CreateFOV html CreateMolecules html CreateSegmentation html CreateSeuratObject html Crop html DefaultAssay-StdAssay html DefaultAssay html DefaultDimReduc html DefaultFOV html DefaultLayer-StdAssay html DefaultLayer html DimReduc-class html DimReduc-validity html Distances html Embeddings html EmptyDF html EmptyMatrix html ExtractField html FOV-class html FOV-methods html FOV-validity html FetchData html FilterObjects html GetImage html GetTissueCoordinates html Graph-class html Idents html Images html Indices html IsGlobal html IsMatrixEmpty html IsNamedList html IsSparse html JS html JackStrawData-class html JackStrawData-methods html Key-validity html Key html KeyMixin-class html Layers-StdAssay html Layers html Loadings html LogMap-class html LogMap-validity html LogSeuratCommand html MatchCells html Misc-StdAssay html Misc html Molecules-class html Molecules-methods html NNIndex html Neighbor-class html Neighbor-methods html ObjectAccess html Overlay html PackageCheck html PolyVtx html Project html Radius html RandomName html RegisterSparseMatrix html RenameAssays html RenameCells-StdAssay html RenameCells html RowMergeSparseMatrices html SaveSeuratRds html Segmentation-class html Segmentation-methods html Seurat-class html Seurat-validity html SeuratCommand-class html SeuratObject-options html SeuratObject-package html Simplify html SparseEmptyMatrix html SpatialImage-class html SpatialImage-methods html SplitLayers html StdAssay-class html StdAssay-validity html Stdev html StitchMatrix html Theta html Tool html UpdateSeuratObject html UpdateSlots html VariableFeatures-StdAssay html VariableFeatures html Version html WhichCells html aggregate html angles html as.Centroids html as.Graph html as.Neighbor html as.Seurat html as.list.SeuratCommand html as.matrix.LogMap html as.sparse html cash-.Assay html cash-.Assay5 html cash-.Seurat html cash-.SeuratCommand html cash-.StdAssay html colMeans-Assay-method html colMeans-Seurat-method html dim.Assay html dim.Assay5 html dim.DimReduc html dim.Seurat html dim.StdAssay html dimnames.Assay html dimnames.Assay5 html dimnames.Seurat html dimnames.StdAssay html dot-AssayClass html dot-BPMatrixMode html dot-CalcN html dot-CheckFmargin html dot-ClassPkg html dot-Collections html dot-Contains html dot-CreateStdAssay html dot-DefaultFOV html dot-Deprecate html dot-DiskLoad html dot-DollarNames.Assay html dot-DollarNames.Assay5 html dot-DollarNames.Seurat html dot-DollarNames.SeuratCommand html dot-DollarNames.StdAssay html dot-FileMove html dot-FilePath html dot-FilterObjects html dot-FindObject html dot-GetMethod html dot-IsFutureSeurat html dot-KeyPattern html dot-MARGIN html dot-PropagateList html dot-RandomKey html dot-SelectFeatures html dot-SparseSlots html dot-Subobjects html droplevels.LogMap html intersect.LogMap html labels.LogMap html merge.Assay html merge.Assay5 html merge.DimReduc html merge.Seurat html merge.StdAssay html names.Seurat html old-assign html oldseurat-class html pbmc_small html print.DimReduc html reexports html s4list html set-if-na html set-if-null html show-Assay-method html show-DimReduc-method html show-Graph-method html show-LogMap-method html show-Seurat-method html show-SeuratCommand-method html show-StdAssay-method html show-oldseurat-method html split.Assay html split.Assay5 html split.Seurat html split.StdAssay html sub-.Assay html sub-.Assay5 html sub-.DimReduc html sub-.SeuratCommand html sub-.StdAssay html sub-LogMap-method html sub-sub-.Assay html sub-sub-.Assay5 html sub-sub-.DimReduc html sub-sub-.Seurat html sub-sub-.StdAssay html sub-sub-LogMap-internal-method html sub-subset-Seurat-NULL html sub-subset-Seurat-character-missing-StdAssay-method html sub-subset-Seurat html subset.Assay html subset.Assay5 html subset.DimReduc html subset.Seurat html subset.StdAssay html v5-assay-summaries html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SeuratObject) + test -d SeuratObject/src + cd SeuratObject/src + rm -f RcppExports.o data_manipulation.o valid_pointer.o SeuratObject.so + rm -f /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 5.0.2-1.fc39.copr7428030 --unique-debug-suffix -5.0.2-1.fc39.copr7428030.x86_64 --unique-debug-src-base R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/SeuratObject find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 12 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 Provides: R-CRAN-SeuratObject = 5.0.2-1.fc39.copr7428030 R-CRAN-SeuratObject(x86-64) = 5.0.2-1.fc39.copr7428030 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-SeuratObject-debugsource-5.0.2-1.fc39.copr7428030.x86_64 Provides: R-CRAN-SeuratObject-debugsource = 5.0.2-1.fc39.copr7428030 R-CRAN-SeuratObject-debugsource(x86-64) = 5.0.2-1.fc39.copr7428030 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-SeuratObject-debuginfo-5.0.2-1.fc39.copr7428030.x86_64 Provides: R-CRAN-SeuratObject-debuginfo = 5.0.2-1.fc39.copr7428030 R-CRAN-SeuratObject-debuginfo(x86-64) = 5.0.2-1.fc39.copr7428030 debuginfo(build-id) = c045e33b744d4d8e8f91b0de8df479a94a3386b5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-SeuratObject-debugsource(x86-64) = 5.0.2-1.fc39.copr7428030 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-SeuratObject-debugsource-5.0.2-1.fc39.copr7428030.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-SeuratObject-debuginfo-5.0.2-1.fc39.copr7428030.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.RJyztx + umask 022 + cd /builddir/build/BUILD + cd SeuratObject + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.zcjLJp + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/SeuratObject-SPECPARTS + rm -rf SeuratObject SeuratObject.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm Finish: build phase for R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-x86_64-1715218004.743702/root/var/log/dnf.log /var/lib/mock/fedora-39-x86_64-1715218004.743702/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-x86_64-1715218004.743702/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-SeuratObject-5.0.2-1.fc39.copr7428030.src.rpm) Config(child) 1 minutes 15 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-SeuratObject-debuginfo", "epoch": null, "version": "5.0.2", "release": "1.fc39.copr7428030", "arch": "x86_64" }, { "name": "R-CRAN-SeuratObject-debugsource", "epoch": null, "version": "5.0.2", "release": "1.fc39.copr7428030", "arch": "x86_64" }, { "name": "R-CRAN-SeuratObject", "epoch": null, "version": "5.0.2", "release": "1.fc39.copr7428030", "arch": "x86_64" }, { "name": "R-CRAN-SeuratObject", "epoch": null, "version": "5.0.2", "release": "1.fc39.copr7428030", "arch": "src" } ] } RPMResults finished