%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  spatPomp
%global packver   0.35.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.35.0
Release:          1%{?dist}%{?buildtag}
Summary:          Inference for Spatiotemporal Partially Observed Markov Processes

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1
Requires:         R-core >= 4.1
BuildRequires:    R-CRAN-pomp >= 5.4
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-abind 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-ggplot2 
Requires:         R-CRAN-pomp >= 5.4
Requires:         R-methods 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-abind 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-ggplot2 

%description
Inference on panel data using spatiotemporal partially-observed Markov
process (SpatPOMP) models. The 'spatPomp' package extends 'pomp' to
include algorithms taking advantage of the spatial structure in order to
assist with handling high dimensional processes. See Asfaw et al. (2024)
<doi:10.48550/arXiv.2101.01157> for further description of the package.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}