%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  incidence
%global packver   1.7.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.7.5
Release:          1%{?dist}%{?buildtag}
Summary:          Compute, Handle, Plot and Model Incidence of Dated Events

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 >= 3.3.2
BuildRequires:    R-CRAN-aweek >= 0.2.0
Requires:         R-CRAN-ggplot2 >= 3.3.2
Requires:         R-CRAN-aweek >= 0.2.0

%description
Provides functions and classes to compute, handle and visualise incidence
from dated events for a defined time interval. Dates can be provided in
various standard formats. The class 'incidence' is used to store computed
incidence and can be easily manipulated, subsetted, and plotted. In
addition, log-linear models can be fitted to 'incidence' objects using
'fit'. This package is part of the RECON
(<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}