calculate_celltype_prob {scCAN} | R Documentation |
Calculate clusters and cell types similarity based on the markers.
calculate_celltype_prob(clt_marker_list, marker_database_list, type = "jacc")
clt_marker_list |
A list of markers for all cluster. |
marker_database_list |
A list of markers of all reference cell types. |
type |
A parameter to select the method to measure cluster and cell type similarity
. |
A confusion matrix between clusters and cell types. Each cell represents a probabilty of a cluster belongs to a cell type.