ct2coord {RRNA} | R Documentation |
Creates a coordinate file from a CT file that has been loaded into a data frame
ct2coord(input)
input |
Data frame representing a ct file. Created from makeCt or loadCt |
Returns a coordinate file for the secondary structure represented in the CT file
Pseudoknots sometimes cause trouble
JP Bida
ct=makeCt("((((...(((((((....)))))))...((((...))))...))))",
"CCCCAAAGGGGGGGAUUACCCCUCCUUUAAAAGGGUUUUCCCCCCC"
)
coord=ct2coord(ct)
RNAPlot(coord)